data_5SU2 # _model_server_result.job_id VhScW2q_82opUNbUkVheRA _model_server_result.datetime_utc '2024-11-26 22:49:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5su2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5SU2 # _exptl.entry_id 5SU2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 191.273 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(6-methylpyridin-2-yl)-1,4-diazepane _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.93 _cell.angle_gamma 90 _cell.entry_id 5SU2 _cell.length_a 87.768 _cell.length_b 81.535 _cell.length_c 92.644 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SU2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H17 N3' _chem_comp.formula_weight 191.273 _chem_comp.id W7X _chem_comp.mon_nstd_flag . _chem_comp.name 1-(6-methylpyridin-2-yl)-1,4-diazepane _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 W7X sing 376 n n C2 C1 W7X doub 377 n y C2 C3 W7X sing 378 n y C7 C8 W7X sing 379 n n C7 C6 W7X sing 380 n n C1 N W7X sing 381 n y C3 C4 W7X doub 382 n y C8 N2 W7X sing 383 n n N C5 W7X doub 384 n y C4 C5 W7X sing 385 n y C6 N1 W7X sing 386 n n C5 N1 W7X sing 387 n n N1 C10 W7X sing 388 n n C9 N2 W7X sing 389 n n C9 C10 W7X sing 390 n n C7 H1 W7X sing 391 n n C7 H2 W7X sing 392 n n C8 H3 W7X sing 393 n n C8 H4 W7X sing 394 n n N2 H5 W7X sing 395 n n C9 H7 W7X sing 396 n n C9 H8 W7X sing 397 n n C6 H9 W7X sing 398 n n C6 H10 W7X sing 399 n n C4 H11 W7X sing 400 n n C3 H12 W7X sing 401 n n C2 H13 W7X sing 402 n n C H14 W7X sing 403 n n C H15 W7X sing 404 n n C H16 W7X sing 405 n n C10 H17 W7X sing 406 n n C10 H18 W7X sing 407 n n # _atom_sites.entry_id 5SU2 _atom_sites.fract_transf_matrix[1][1] 0.011394 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003687 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012265 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011345 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 W7X B 1 401 401 W7X XXX . D 4 HOH A 1 2101 61 HOH HOH . D 4 HOH A 2 2102 49 HOH HOH . D 4 HOH A 3 2103 4 HOH HOH . D 4 HOH A 4 2104 13 HOH HOH . D 4 HOH A 5 2105 31 HOH HOH . D 4 HOH A 6 2106 38 HOH HOH . D 4 HOH A 7 2107 18 HOH HOH . D 4 HOH A 8 2108 11 HOH HOH . D 4 HOH A 9 2109 3 HOH HOH . D 4 HOH A 10 2110 32 HOH HOH . D 4 HOH A 11 2111 12 HOH HOH . D 4 HOH A 12 2112 10 HOH HOH . D 4 HOH A 13 2113 43 HOH HOH . D 4 HOH A 14 2114 15 HOH HOH . D 4 HOH A 15 2115 53 HOH HOH . D 4 HOH A 16 2116 57 HOH HOH . D 4 HOH A 17 2117 50 HOH HOH . D 4 HOH A 18 2118 16 HOH HOH . D 4 HOH A 19 2119 27 HOH HOH . D 4 HOH A 20 2120 40 HOH HOH . D 4 HOH A 21 2121 30 HOH HOH . D 4 HOH A 22 2122 46 HOH HOH . D 4 HOH A 23 2123 55 HOH HOH . D 4 HOH A 24 2124 47 HOH HOH . D 4 HOH A 25 2125 54 HOH HOH . D 4 HOH A 26 2126 24 HOH HOH . D 4 HOH A 27 2127 45 HOH HOH . D 4 HOH A 28 2128 7 HOH HOH . D 4 HOH A 29 2129 6 HOH HOH . D 4 HOH A 30 2130 59 HOH HOH . E 4 HOH B 1 501 2 HOH HOH . E 4 HOH B 2 502 33 HOH HOH . E 4 HOH B 3 503 41 HOH HOH . E 4 HOH B 4 504 9 HOH HOH . E 4 HOH B 5 505 28 HOH HOH . E 4 HOH B 6 506 60 HOH HOH . E 4 HOH B 7 507 56 HOH HOH . E 4 HOH B 8 508 35 HOH HOH . E 4 HOH B 9 509 20 HOH HOH . E 4 HOH B 10 510 25 HOH HOH . E 4 HOH B 11 511 62 HOH HOH . E 4 HOH B 12 512 52 HOH HOH . E 4 HOH B 13 513 14 HOH HOH . E 4 HOH B 14 514 42 HOH HOH . E 4 HOH B 15 515 23 HOH HOH . E 4 HOH B 16 516 37 HOH HOH . E 4 HOH B 17 517 29 HOH HOH . E 4 HOH B 18 518 22 HOH HOH . E 4 HOH B 19 519 5 HOH HOH . E 4 HOH B 20 520 44 HOH HOH . E 4 HOH B 21 521 39 HOH HOH . E 4 HOH B 22 522 26 HOH HOH . E 4 HOH B 23 523 36 HOH HOH . E 4 HOH B 24 524 19 HOH HOH . E 4 HOH B 25 525 51 HOH HOH . E 4 HOH B 26 526 17 HOH HOH . E 4 HOH B 27 527 58 HOH HOH . E 4 HOH B 28 528 21 HOH HOH . E 4 HOH B 29 529 63 HOH HOH . E 4 HOH B 30 530 8 HOH HOH . E 4 HOH B 31 531 34 HOH HOH . E 4 HOH B 32 532 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 W7X . . . C 3 -3.342 14.218 -33.436 0.48 20 0 N1 W7X 401 B 1 HETATM 2 C C7 W7X . . . C 3 -3.883 16.228 -34.837 0.48 20 0 C7 W7X 401 B 1 HETATM 3 C C8 W7X . . . C 3 -4.716 17.237 -34.075 0.48 20 0 C8 W7X 401 B 1 HETATM 4 N N2 W7X . . . C 3 -5.123 16.578 -32.758 0.48 20 1 N2 W7X 401 B 1 HETATM 5 C C9 W7X . . . C 3 -5.629 15.133 -32.952 0.48 20 0 C9 W7X 401 B 1 HETATM 6 C C1 W7X . . . C 3 -0.418 12.708 -34.642 0.48 20 0 C1 W7X 401 B 1 HETATM 7 C C5 W7X . . . C 3 -2.474 13.16 -33.786 0.48 20 0 C5 W7X 401 B 1 HETATM 8 C C6 W7X . . . C 3 -2.947 15.545 -33.835 0.48 20 0 C6 W7X 401 B 1 HETATM 9 C C4 W7X . . . C 3 -2.923 11.965 -33.979 0.48 20 0 C4 W7X 401 B 1 HETATM 10 C C3 W7X . . . C 3 -2.047 11.137 -34.543 0.48 20 0 C3 W7X 401 B 1 HETATM 11 C C2 W7X . . . C 3 -0.785 11.469 -34.885 0.48 20 0 C2 W7X 401 B 1 HETATM 12 C C W7X . . . C 3 0.859 13.198 -35.191 0.48 20 0 C W7X 401 B 1 HETATM 13 N N W7X . . . C 3 -1.2 13.558 -34.05 0.48 20 0 N W7X 401 B 1 HETATM 14 C C10 W7X . . . C 3 -4.551 14.026 -32.647 0.48 20 0 C10 W7X 401 B 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #