data_5SU5 # _model_server_result.job_id br831pv48U4081mKT16sag _model_server_result.datetime_utc '2024-11-13 07:02:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5su5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5SU5 # _exptl.entry_id 5SU5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 205.009 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-bromo-1-methylpyrimidine-2,4(1H,3H)-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.02 _cell.angle_gamma 90 _cell.entry_id 5SU5 _cell.length_a 88.119 _cell.length_b 81.758 _cell.length_c 92.715 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SU5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 242 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 251 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 283 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 292 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.072 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C5 H5 Br N2 O2' _chem_comp.formula_weight 205.009 _chem_comp.id W8W _chem_comp.mon_nstd_flag . _chem_comp.name 5-bromo-1-methylpyrimidine-2,4(1H,3H)-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BR C2 W8W sing 376 n n C1 C2 W8W doub 377 n n C1 N W8W sing 378 n n C N W8W sing 379 n n C2 C3 W8W sing 380 n n N C4 W8W sing 381 n n C3 O1 W8W doub 382 n n C3 N1 W8W sing 383 n n C4 N1 W8W sing 384 n n C4 O W8W doub 385 n n N1 H1 W8W sing 386 n n C1 H2 W8W sing 387 n n C H3 W8W sing 388 n n C H4 W8W sing 389 n n C H5 W8W sing 390 n n # _atom_sites.entry_id 5SU5 _atom_sites.fract_transf_matrix[1][1] 0.011348 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003692 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012231 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011342 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 W8W B 1 401 401 W8W XXX . D 4 HOH A 1 2101 14 HOH HOH . D 4 HOH A 2 2102 2 HOH HOH . D 4 HOH A 3 2103 22 HOH HOH . D 4 HOH A 4 2104 37 HOH HOH . D 4 HOH A 5 2105 53 HOH HOH . D 4 HOH A 6 2106 9 HOH HOH . D 4 HOH A 7 2107 6 HOH HOH . D 4 HOH A 8 2108 26 HOH HOH . D 4 HOH A 9 2109 18 HOH HOH . D 4 HOH A 10 2110 16 HOH HOH . D 4 HOH A 11 2111 51 HOH HOH . D 4 HOH A 12 2112 43 HOH HOH . D 4 HOH A 13 2113 10 HOH HOH . D 4 HOH A 14 2114 13 HOH HOH . D 4 HOH A 15 2115 19 HOH HOH . D 4 HOH A 16 2116 21 HOH HOH . D 4 HOH A 17 2117 12 HOH HOH . D 4 HOH A 18 2118 15 HOH HOH . D 4 HOH A 19 2119 34 HOH HOH . D 4 HOH A 20 2120 38 HOH HOH . D 4 HOH A 21 2121 25 HOH HOH . D 4 HOH A 22 2122 17 HOH HOH . D 4 HOH A 23 2123 33 HOH HOH . D 4 HOH A 24 2124 50 HOH HOH . D 4 HOH A 25 2125 46 HOH HOH . D 4 HOH A 26 2126 35 HOH HOH . D 4 HOH A 27 2127 8 HOH HOH . D 4 HOH A 28 2128 44 HOH HOH . D 4 HOH A 29 2129 48 HOH HOH . D 4 HOH A 30 2130 5 HOH HOH . E 4 HOH B 1 501 20 HOH HOH . E 4 HOH B 2 502 36 HOH HOH . E 4 HOH B 3 503 23 HOH HOH . E 4 HOH B 4 504 3 HOH HOH . E 4 HOH B 5 505 7 HOH HOH . E 4 HOH B 6 506 47 HOH HOH . E 4 HOH B 7 507 42 HOH HOH . E 4 HOH B 8 508 45 HOH HOH . E 4 HOH B 9 509 39 HOH HOH . E 4 HOH B 10 510 28 HOH HOH . E 4 HOH B 11 511 24 HOH HOH . E 4 HOH B 12 512 41 HOH HOH . E 4 HOH B 13 513 29 HOH HOH . E 4 HOH B 14 514 40 HOH HOH . E 4 HOH B 15 515 52 HOH HOH . E 4 HOH B 16 516 49 HOH HOH . E 4 HOH B 17 517 4 HOH HOH . E 4 HOH B 18 518 27 HOH HOH . E 4 HOH B 19 519 31 HOH HOH . E 4 HOH B 20 520 32 HOH HOH . E 4 HOH B 21 521 11 HOH HOH . E 4 HOH B 22 522 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 W8W . . . C 3 -3.439 13.144 -33.449 0.62 20 0 N1 W8W 401 B 1 HETATM 2 O O1 W8W . . . C 3 -2.266 11.228 -33.873 0.62 20 -1 O1 W8W 401 B 1 HETATM 3 C C1 W8W . . . C 3 -1.408 14.539 -34.775 0.62 20 0 C1 W8W 401 B 1 HETATM 4 C C4 W8W . . . C 3 -3.512 14.524 -33.659 0.62 20 0 C4 W8W 401 B 1 HETATM 5 C C3 W8W . . . C 3 -2.344 12.432 -33.898 0.62 20 0 C3 W8W 401 B 1 HETATM 6 C C2 W8W . . . C 3 -1.349 13.171 -34.516 0.62 20 0 C2 W8W 401 B 1 HETATM 7 BR BR W8W . . . C 3 0.152 12.281 -35.242 0.62 20 0 BR W8W 401 B 1 HETATM 8 O O W8W . . . C 3 -4.407 15.205 -33.312 0.62 20 0 O W8W 401 B 1 HETATM 9 N N W8W . . . C 3 -2.477 15.207 -34.336 0.62 20 0 N W8W 401 B 1 HETATM 10 C C W8W . . . C 3 -2.549 16.648 -34.539 0.62 20 0 C W8W 401 B 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #