data_5SU7 # _model_server_result.job_id tGEfJeGTx4hdUS5C8iR-HA _model_server_result.datetime_utc '2024-11-23 05:47:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5su7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5SU7 # _exptl.entry_id 5SU7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 185.214 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-4-(3,4-difluorophenyl)butan-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.03 _cell.angle_gamma 90 _cell.entry_id 5SU7 _cell.length_a 88.391 _cell.length_b 81.818 _cell.length_c 93.717 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SU7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 242 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 251 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 283 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 292 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.002 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H13 F2 N' _chem_comp.formula_weight 185.214 _chem_comp.id V3R _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-4-(3,4-difluorophenyl)butan-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C5 V3R doub 358 n y C6 C7 V3R sing 359 n y C5 C4 V3R sing 360 n y F1 C7 V3R sing 361 n n C7 C8 V3R doub 362 n y C4 C3 V3R sing 363 n n C4 C9 V3R doub 364 n y C3 C2 V3R sing 365 n n C8 C9 V3R sing 366 n y C8 F V3R sing 367 n n C2 C1 V3R sing 368 n n C1 N V3R sing 369 n n C1 C V3R sing 370 n n C9 H1 V3R sing 371 n n C1 H2 V3R sing 372 n n C5 H3 V3R sing 373 n n C6 H4 V3R sing 374 n n C3 H5 V3R sing 375 n n C3 H6 V3R sing 376 n n C2 H7 V3R sing 377 n n C2 H8 V3R sing 378 n n C H9 V3R sing 379 n n C H10 V3R sing 380 n n C H11 V3R sing 381 n n N H12 V3R sing 382 n n N H13 V3R sing 383 n n # _atom_sites.entry_id 5SU7 _atom_sites.fract_transf_matrix[1][1] 0.011313 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003682 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012222 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011221 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 V3R B 1 401 401 V3R XXX . D 4 HOH A 1 2101 32 HOH HOH . D 4 HOH A 2 2102 11 HOH HOH . D 4 HOH A 3 2103 27 HOH HOH . D 4 HOH A 4 2104 18 HOH HOH . D 4 HOH A 5 2105 9 HOH HOH . D 4 HOH A 6 2106 3 HOH HOH . D 4 HOH A 7 2107 25 HOH HOH . D 4 HOH A 8 2108 7 HOH HOH . D 4 HOH A 9 2109 4 HOH HOH . D 4 HOH A 10 2110 22 HOH HOH . D 4 HOH A 11 2111 8 HOH HOH . D 4 HOH A 12 2112 35 HOH HOH . D 4 HOH A 13 2113 40 HOH HOH . D 4 HOH A 14 2114 20 HOH HOH . D 4 HOH A 15 2115 31 HOH HOH . D 4 HOH A 16 2116 12 HOH HOH . D 4 HOH A 17 2117 33 HOH HOH . D 4 HOH A 18 2118 6 HOH HOH . D 4 HOH A 19 2119 28 HOH HOH . D 4 HOH A 20 2120 17 HOH HOH . D 4 HOH A 21 2121 15 HOH HOH . D 4 HOH A 22 2122 23 HOH HOH . D 4 HOH A 23 2123 39 HOH HOH . E 4 HOH B 1 501 37 HOH HOH . E 4 HOH B 2 502 21 HOH HOH . E 4 HOH B 3 503 19 HOH HOH . E 4 HOH B 4 504 2 HOH HOH . E 4 HOH B 5 505 10 HOH HOH . E 4 HOH B 6 506 13 HOH HOH . E 4 HOH B 7 507 30 HOH HOH . E 4 HOH B 8 508 36 HOH HOH . E 4 HOH B 9 509 29 HOH HOH . E 4 HOH B 10 510 24 HOH HOH . E 4 HOH B 11 511 16 HOH HOH . E 4 HOH B 12 512 14 HOH HOH . E 4 HOH B 13 513 5 HOH HOH . E 4 HOH B 14 514 38 HOH HOH . E 4 HOH B 15 515 34 HOH HOH . E 4 HOH B 16 516 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 V3R . . . C 3 -0.16 12.656 -35.405 0.92 20 0 C7 V3R 401 B 1 HETATM 2 C C8 V3R . . . C 3 -1.298 12.311 -34.698 0.92 20 0 C8 V3R 401 B 1 HETATM 3 C C9 V3R . . . C 3 -2.358 13.189 -34.587 0.92 20 0 C9 V3R 401 B 1 HETATM 4 C C1 V3R . . . C 3 -4.795 16.356 -33.409 0.92 20 0 C1 V3R 401 B 1 HETATM 5 C C5 V3R . . . C 3 -1.092 14.758 -35.865 0.92 20 0 C5 V3R 401 B 1 HETATM 6 C C6 V3R . . . C 3 -0.046 13.887 -35.982 0.92 20 0 C6 V3R 401 B 1 HETATM 7 C C4 V3R . . . C 3 -2.232 14.412 -35.188 0.92 20 0 C4 V3R 401 B 1 HETATM 8 C C3 V3R . . . C 3 -3.329 15.397 -35.136 0.92 20 0 C3 V3R 401 B 1 HETATM 9 C C2 V3R . . . C 3 -4.24 15.043 -33.972 0.92 20 0 C2 V3R 401 B 1 HETATM 10 F F1 V3R . . . C 3 0.787 11.788 -35.553 0.92 20 0 F1 V3R 401 B 1 HETATM 11 F F V3R . . . C 3 -1.343 11.152 -34.117 0.92 20 0 F V3R 401 B 1 HETATM 12 C C V3R . . . C 3 -3.867 16.931 -32.34 0.92 20 0 C V3R 401 B 1 HETATM 13 N N V3R . . . C 3 -6.201 16.089 -32.789 0.92 20 1 N V3R 401 B 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 13 #