data_5SU8
#
_model_server_result.job_id            CsYEQH4lOzvTChGknarQCw 
_model_server_result.datetime_utc      '2024-11-23 23:04:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5su8 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":2101}' 
#
_entry.id    5SU8 
#
_exptl.entry_id    5SU8 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              212.332 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S)-1-{[(1R,2R)-2-(aminomethyl)cyclohexyl]methyl}pyrrolidin-2-ol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.79 
_cell.angle_gamma         90 
_cell.entry_id            5SU8 
_cell.length_a            89.789 
_cell.length_b            81.642 
_cell.length_c            92.984 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5SU8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C12 H24 N2 O' 
_chem_comp.formula_weight    212.332 
_chem_comp.id                V40 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S)-1-{[(1R,2R)-2-(aminomethyl)cyclohexyl]methyl}pyrrolidin-2-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C9 V40 sing 358 n n 
C10 C11 V40 sing 359 n n 
C9 C8 V40 sing 360 n n 
C11 N1 V40 sing 361 n n 
C11 O V40 sing 362 n n 
C8 N1 V40 sing 363 n n 
N1 C7 V40 sing 364 n n 
C7 C6 V40 sing 365 n n 
N C V40 sing 366 n n 
C6 C1 V40 sing 367 n n 
C6 C5 V40 sing 368 n n 
C1 C V40 sing 369 n n 
C1 C2 V40 sing 370 n n 
C5 C4 V40 sing 371 n n 
C2 C3 V40 sing 372 n n 
C4 C3 V40 sing 373 n n 
C7 H2 V40 sing 374 n n 
C7 H3 V40 sing 375 n n 
C8 H4 V40 sing 376 n n 
C8 H5 V40 sing 377 n n 
C9 H6 V40 sing 378 n n 
C9 H7 V40 sing 379 n n 
C1 H8 V40 sing 380 n n 
C5 H9 V40 sing 381 n n 
C5 H10 V40 sing 382 n n 
C6 H11 V40 sing 383 n n 
C4 H12 V40 sing 384 n n 
C4 H13 V40 sing 385 n n 
C3 H14 V40 sing 386 n n 
C3 H15 V40 sing 387 n n 
C2 H16 V40 sing 388 n n 
C2 H17 V40 sing 389 n n 
O H18 V40 sing 390 n n 
C11 H19 V40 sing 391 n n 
C10 H20 V40 sing 392 n n 
C10 H21 V40 sing 393 n n 
C H22 V40 sing 394 n n 
C H23 V40 sing 395 n n 
N H24 V40 sing 396 n n 
N H25 V40 sing 397 n n 
#
_atom_sites.entry_id                     5SU8 
_atom_sites.fract_transf_matrix[1][1]    0.011137 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003789 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012249 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01136 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 V40 A 1 2101 2101 V40 XXX . 
D 4 HOH A 1 2201 72 HOH HOH . 
D 4 HOH A 2 2202 20 HOH HOH . 
D 4 HOH A 3 2203 27 HOH HOH . 
D 4 HOH A 4 2204 2 HOH HOH . 
D 4 HOH A 5 2205 58 HOH HOH . 
D 4 HOH A 6 2206 83 HOH HOH . 
D 4 HOH A 7 2207 63 HOH HOH . 
D 4 HOH A 8 2208 4 HOH HOH . 
D 4 HOH A 9 2209 43 HOH HOH . 
D 4 HOH A 10 2210 9 HOH HOH . 
D 4 HOH A 11 2211 39 HOH HOH . 
D 4 HOH A 12 2212 5 HOH HOH . 
D 4 HOH A 13 2213 6 HOH HOH . 
D 4 HOH A 14 2214 51 HOH HOH . 
D 4 HOH A 15 2215 42 HOH HOH . 
D 4 HOH A 16 2216 79 HOH HOH . 
D 4 HOH A 17 2217 69 HOH HOH . 
D 4 HOH A 18 2218 34 HOH HOH . 
D 4 HOH A 19 2219 68 HOH HOH . 
D 4 HOH A 20 2220 62 HOH HOH . 
D 4 HOH A 21 2221 52 HOH HOH . 
D 4 HOH A 22 2222 41 HOH HOH . 
D 4 HOH A 23 2223 70 HOH HOH . 
D 4 HOH A 24 2224 19 HOH HOH . 
D 4 HOH A 25 2225 17 HOH HOH . 
D 4 HOH A 26 2226 35 HOH HOH . 
D 4 HOH A 27 2227 13 HOH HOH . 
D 4 HOH A 28 2228 48 HOH HOH . 
D 4 HOH A 29 2229 49 HOH HOH . 
D 4 HOH A 30 2230 36 HOH HOH . 
D 4 HOH A 31 2231 8 HOH HOH . 
D 4 HOH A 32 2232 38 HOH HOH . 
D 4 HOH A 33 2233 15 HOH HOH . 
D 4 HOH A 34 2234 75 HOH HOH . 
D 4 HOH A 35 2235 82 HOH HOH . 
D 4 HOH A 36 2236 21 HOH HOH . 
D 4 HOH A 37 2237 3 HOH HOH . 
D 4 HOH A 38 2238 25 HOH HOH . 
D 4 HOH A 39 2239 71 HOH HOH . 
D 4 HOH A 40 2240 81 HOH HOH . 
D 4 HOH A 41 2241 77 HOH HOH . 
E 4 HOH B 1 401 80 HOH HOH . 
E 4 HOH B 2 402 28 HOH HOH . 
E 4 HOH B 3 403 16 HOH HOH . 
E 4 HOH B 4 404 56 HOH HOH . 
E 4 HOH B 5 405 50 HOH HOH . 
E 4 HOH B 6 406 73 HOH HOH . 
E 4 HOH B 7 407 67 HOH HOH . 
E 4 HOH B 8 408 37 HOH HOH . 
E 4 HOH B 9 409 46 HOH HOH . 
E 4 HOH B 10 410 44 HOH HOH . 
E 4 HOH B 11 411 53 HOH HOH . 
E 4 HOH B 12 412 55 HOH HOH . 
E 4 HOH B 13 413 40 HOH HOH . 
E 4 HOH B 14 414 64 HOH HOH . 
E 4 HOH B 15 415 45 HOH HOH . 
E 4 HOH B 16 416 60 HOH HOH . 
E 4 HOH B 17 417 11 HOH HOH . 
E 4 HOH B 18 418 66 HOH HOH . 
E 4 HOH B 19 419 7 HOH HOH . 
E 4 HOH B 20 420 74 HOH HOH . 
E 4 HOH B 21 421 65 HOH HOH . 
E 4 HOH B 22 422 23 HOH HOH . 
E 4 HOH B 23 423 61 HOH HOH . 
E 4 HOH B 24 424 24 HOH HOH . 
E 4 HOH B 25 425 30 HOH HOH . 
E 4 HOH B 26 426 33 HOH HOH . 
E 4 HOH B 27 427 12 HOH HOH . 
E 4 HOH B 28 428 78 HOH HOH . 
E 4 HOH B 29 429 14 HOH HOH . 
E 4 HOH B 30 430 47 HOH HOH . 
E 4 HOH B 31 431 22 HOH HOH . 
E 4 HOH B 32 432 57 HOH HOH . 
E 4 HOH B 33 433 10 HOH HOH . 
E 4 HOH B 34 434 18 HOH HOH . 
E 4 HOH B 35 435 59 HOH HOH . 
E 4 HOH B 36 436 31 HOH HOH . 
E 4 HOH B 37 437 26 HOH HOH . 
E 4 HOH B 38 438 54 HOH HOH . 
E 4 HOH B 39 439 76 HOH HOH . 
E 4 HOH B 40 440 29 HOH HOH . 
E 4 HOH B 41 441 32 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 V40 . . . C 3 25.439 15.911 36.389 0.72 20 0 N1 V40 2101 A 1 
HETATM 2 C C7 V40 . . . C 3 25.466 15.935 37.843 0.72 20 0 C7 V40 2101 A 1 
HETATM 3 C C8 V40 . . . C 3 24.943 17.138 35.846 0.72 20 0 C8 V40 2101 A 1 
HETATM 4 C C9 V40 . . . C 3 23.477 16.824 35.521 0.72 20 0 C9 V40 2101 A 1 
HETATM 5 C C1 V40 . . . C 3 27.788 16.468 38.771 0.72 20 0 C1 V40 2101 A 1 
HETATM 6 C C5 V40 . . . C 3 26.391 14.6 39.658 0.72 20 0 C5 V40 2101 A 1 
HETATM 7 C C6 V40 . . . C 3 26.756 15.383 38.416 0.72 20 0 C6 V40 2101 A 1 
HETATM 8 C C4 V40 . . . C 3 26.881 15.176 40.993 0.72 20 0 C4 V40 2101 A 1 
HETATM 9 C C3 V40 . . . C 3 26.951 16.701 41.095 0.72 20 0 C3 V40 2101 A 1 
HETATM 10 C C2 V40 . . . C 3 27.164 17.408 39.768 0.72 20 0 C2 V40 2101 A 1 
HETATM 11 O O V40 . . . C 3 24.056 14.002 36.729 0.72 20 0 O V40 2101 A 1 
HETATM 12 C C11 V40 . . . C 3 24.62 14.786 35.772 0.72 20 0 C11 V40 2101 A 1 
HETATM 13 C C10 V40 . . . C 3 23.55 15.456 34.948 0.72 20 0 C10 V40 2101 A 1 
HETATM 14 C C V40 . . . C 3 29.089 15.933 39.354 0.72 20 0 C V40 2101 A 1 
HETATM 15 N N V40 . . . C 3 30.242 15.822 38.349 0.72 20 1 N V40 2101 A 1 
#
_model_server_stats.io_time_ms              54 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           369 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           15 
#