data_5SU8 # _model_server_result.job_id pjHeY_EBXbrON6hpmK6bjA _model_server_result.datetime_utc '2024-11-13 07:09:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5su8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2101}' # _entry.id 5SU8 # _exptl.entry_id 5SU8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 212.332 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-1-{[(1R,2R)-2-(aminomethyl)cyclohexyl]methyl}pyrrolidin-2-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.79 _cell.angle_gamma 90 _cell.entry_id 5SU8 _cell.length_a 89.789 _cell.length_b 81.642 _cell.length_c 92.984 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SU8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H24 N2 O' _chem_comp.formula_weight 212.332 _chem_comp.id V40 _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-1-{[(1R,2R)-2-(aminomethyl)cyclohexyl]methyl}pyrrolidin-2-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C9 V40 sing 358 n n C10 C11 V40 sing 359 n n C9 C8 V40 sing 360 n n C11 N1 V40 sing 361 n n C11 O V40 sing 362 n n C8 N1 V40 sing 363 n n N1 C7 V40 sing 364 n n C7 C6 V40 sing 365 n n N C V40 sing 366 n n C6 C1 V40 sing 367 n n C6 C5 V40 sing 368 n n C1 C V40 sing 369 n n C1 C2 V40 sing 370 n n C5 C4 V40 sing 371 n n C2 C3 V40 sing 372 n n C4 C3 V40 sing 373 n n C7 H2 V40 sing 374 n n C7 H3 V40 sing 375 n n C8 H4 V40 sing 376 n n C8 H5 V40 sing 377 n n C9 H6 V40 sing 378 n n C9 H7 V40 sing 379 n n C1 H8 V40 sing 380 n n C5 H9 V40 sing 381 n n C5 H10 V40 sing 382 n n C6 H11 V40 sing 383 n n C4 H12 V40 sing 384 n n C4 H13 V40 sing 385 n n C3 H14 V40 sing 386 n n C3 H15 V40 sing 387 n n C2 H16 V40 sing 388 n n C2 H17 V40 sing 389 n n O H18 V40 sing 390 n n C11 H19 V40 sing 391 n n C10 H20 V40 sing 392 n n C10 H21 V40 sing 393 n n C H22 V40 sing 394 n n C H23 V40 sing 395 n n N H24 V40 sing 396 n n N H25 V40 sing 397 n n # _atom_sites.entry_id 5SU8 _atom_sites.fract_transf_matrix[1][1] 0.011137 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003789 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012249 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01136 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 V40 A 1 2101 2101 V40 XXX . D 4 HOH A 1 2201 72 HOH HOH . D 4 HOH A 2 2202 20 HOH HOH . D 4 HOH A 3 2203 27 HOH HOH . D 4 HOH A 4 2204 2 HOH HOH . D 4 HOH A 5 2205 58 HOH HOH . D 4 HOH A 6 2206 83 HOH HOH . D 4 HOH A 7 2207 63 HOH HOH . D 4 HOH A 8 2208 4 HOH HOH . D 4 HOH A 9 2209 43 HOH HOH . D 4 HOH A 10 2210 9 HOH HOH . D 4 HOH A 11 2211 39 HOH HOH . D 4 HOH A 12 2212 5 HOH HOH . D 4 HOH A 13 2213 6 HOH HOH . D 4 HOH A 14 2214 51 HOH HOH . D 4 HOH A 15 2215 42 HOH HOH . D 4 HOH A 16 2216 79 HOH HOH . D 4 HOH A 17 2217 69 HOH HOH . D 4 HOH A 18 2218 34 HOH HOH . D 4 HOH A 19 2219 68 HOH HOH . D 4 HOH A 20 2220 62 HOH HOH . D 4 HOH A 21 2221 52 HOH HOH . D 4 HOH A 22 2222 41 HOH HOH . D 4 HOH A 23 2223 70 HOH HOH . D 4 HOH A 24 2224 19 HOH HOH . D 4 HOH A 25 2225 17 HOH HOH . D 4 HOH A 26 2226 35 HOH HOH . D 4 HOH A 27 2227 13 HOH HOH . D 4 HOH A 28 2228 48 HOH HOH . D 4 HOH A 29 2229 49 HOH HOH . D 4 HOH A 30 2230 36 HOH HOH . D 4 HOH A 31 2231 8 HOH HOH . D 4 HOH A 32 2232 38 HOH HOH . D 4 HOH A 33 2233 15 HOH HOH . D 4 HOH A 34 2234 75 HOH HOH . D 4 HOH A 35 2235 82 HOH HOH . D 4 HOH A 36 2236 21 HOH HOH . D 4 HOH A 37 2237 3 HOH HOH . D 4 HOH A 38 2238 25 HOH HOH . D 4 HOH A 39 2239 71 HOH HOH . D 4 HOH A 40 2240 81 HOH HOH . D 4 HOH A 41 2241 77 HOH HOH . E 4 HOH B 1 401 80 HOH HOH . E 4 HOH B 2 402 28 HOH HOH . E 4 HOH B 3 403 16 HOH HOH . E 4 HOH B 4 404 56 HOH HOH . E 4 HOH B 5 405 50 HOH HOH . E 4 HOH B 6 406 73 HOH HOH . E 4 HOH B 7 407 67 HOH HOH . E 4 HOH B 8 408 37 HOH HOH . E 4 HOH B 9 409 46 HOH HOH . E 4 HOH B 10 410 44 HOH HOH . E 4 HOH B 11 411 53 HOH HOH . E 4 HOH B 12 412 55 HOH HOH . E 4 HOH B 13 413 40 HOH HOH . E 4 HOH B 14 414 64 HOH HOH . E 4 HOH B 15 415 45 HOH HOH . E 4 HOH B 16 416 60 HOH HOH . E 4 HOH B 17 417 11 HOH HOH . E 4 HOH B 18 418 66 HOH HOH . E 4 HOH B 19 419 7 HOH HOH . E 4 HOH B 20 420 74 HOH HOH . E 4 HOH B 21 421 65 HOH HOH . E 4 HOH B 22 422 23 HOH HOH . E 4 HOH B 23 423 61 HOH HOH . E 4 HOH B 24 424 24 HOH HOH . E 4 HOH B 25 425 30 HOH HOH . E 4 HOH B 26 426 33 HOH HOH . E 4 HOH B 27 427 12 HOH HOH . E 4 HOH B 28 428 78 HOH HOH . E 4 HOH B 29 429 14 HOH HOH . E 4 HOH B 30 430 47 HOH HOH . E 4 HOH B 31 431 22 HOH HOH . E 4 HOH B 32 432 57 HOH HOH . E 4 HOH B 33 433 10 HOH HOH . E 4 HOH B 34 434 18 HOH HOH . E 4 HOH B 35 435 59 HOH HOH . E 4 HOH B 36 436 31 HOH HOH . E 4 HOH B 37 437 26 HOH HOH . E 4 HOH B 38 438 54 HOH HOH . E 4 HOH B 39 439 76 HOH HOH . E 4 HOH B 40 440 29 HOH HOH . E 4 HOH B 41 441 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 V40 . . . C 3 25.439 15.911 36.389 0.72 20 0 N1 V40 2101 A 1 HETATM 2 C C7 V40 . . . C 3 25.466 15.935 37.843 0.72 20 0 C7 V40 2101 A 1 HETATM 3 C C8 V40 . . . C 3 24.943 17.138 35.846 0.72 20 0 C8 V40 2101 A 1 HETATM 4 C C9 V40 . . . C 3 23.477 16.824 35.521 0.72 20 0 C9 V40 2101 A 1 HETATM 5 C C1 V40 . . . C 3 27.788 16.468 38.771 0.72 20 0 C1 V40 2101 A 1 HETATM 6 C C5 V40 . . . C 3 26.391 14.6 39.658 0.72 20 0 C5 V40 2101 A 1 HETATM 7 C C6 V40 . . . C 3 26.756 15.383 38.416 0.72 20 0 C6 V40 2101 A 1 HETATM 8 C C4 V40 . . . C 3 26.881 15.176 40.993 0.72 20 0 C4 V40 2101 A 1 HETATM 9 C C3 V40 . . . C 3 26.951 16.701 41.095 0.72 20 0 C3 V40 2101 A 1 HETATM 10 C C2 V40 . . . C 3 27.164 17.408 39.768 0.72 20 0 C2 V40 2101 A 1 HETATM 11 O O V40 . . . C 3 24.056 14.002 36.729 0.72 20 0 O V40 2101 A 1 HETATM 12 C C11 V40 . . . C 3 24.62 14.786 35.772 0.72 20 0 C11 V40 2101 A 1 HETATM 13 C C10 V40 . . . C 3 23.55 15.456 34.948 0.72 20 0 C10 V40 2101 A 1 HETATM 14 C C V40 . . . C 3 29.089 15.933 39.354 0.72 20 0 C V40 2101 A 1 HETATM 15 N N V40 . . . C 3 30.242 15.822 38.349 0.72 20 1 N V40 2101 A 1 # _model_server_stats.io_time_ms 82 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #