data_5SUA # _model_server_result.job_id 0doUXjxKel6XLe6bl9LgqQ _model_server_result.datetime_utc '2024-11-26 18:15:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sua # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5SUA # _exptl.entry_id 5SUA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.232 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-oxo-3-(thiomorpholin-4-yl)propanenitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.65 _cell.angle_gamma 90 _cell.entry_id 5SUA _cell.length_a 90.212 _cell.length_b 81.784 _cell.length_c 93.516 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SUA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H10 N2 O S' _chem_comp.formula_weight 170.232 _chem_comp.id V4X _chem_comp.mon_nstd_flag . _chem_comp.name 3-oxo-3-(thiomorpholin-4-yl)propanenitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 V4X sing 358 n n C N V4X sing 359 n n N1 C6 V4X trip 360 n n C1 S V4X sing 361 n n C6 C5 V4X sing 362 n n C3 N V4X sing 363 n n C3 C2 V4X sing 364 n n O C4 V4X doub 365 n n N C4 V4X sing 366 n n C4 C5 V4X sing 367 n n C2 S V4X sing 368 n n C1 H1 V4X sing 369 n n C1 H2 V4X sing 370 n n C5 H3 V4X sing 371 n n C5 H4 V4X sing 372 n n C3 H5 V4X sing 373 n n C3 H6 V4X sing 374 n n C2 H7 V4X sing 375 n n C2 H8 V4X sing 376 n n C H9 V4X sing 377 n n C H10 V4X sing 378 n n # _atom_sites.entry_id 5SUA _atom_sites.fract_transf_matrix[1][1] 0.011085 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003741 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012227 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011286 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 V4X B 1 401 401 V4X XXX . D 4 HOH A 1 2101 67 HOH HOH . D 4 HOH A 2 2102 40 HOH HOH . D 4 HOH A 3 2103 115 HOH HOH . D 4 HOH A 4 2104 86 HOH HOH . D 4 HOH A 5 2105 4 HOH HOH . D 4 HOH A 6 2106 71 HOH HOH . D 4 HOH A 7 2107 53 HOH HOH . D 4 HOH A 8 2108 31 HOH HOH . D 4 HOH A 9 2109 12 HOH HOH . D 4 HOH A 10 2110 27 HOH HOH . D 4 HOH A 11 2111 35 HOH HOH . D 4 HOH A 12 2112 19 HOH HOH . D 4 HOH A 13 2113 32 HOH HOH . D 4 HOH A 14 2114 26 HOH HOH . D 4 HOH A 15 2115 74 HOH HOH . D 4 HOH A 16 2116 63 HOH HOH . D 4 HOH A 17 2117 2 HOH HOH . D 4 HOH A 18 2118 95 HOH HOH . D 4 HOH A 19 2119 42 HOH HOH . D 4 HOH A 20 2120 11 HOH HOH . D 4 HOH A 21 2121 79 HOH HOH . D 4 HOH A 22 2122 29 HOH HOH . D 4 HOH A 23 2123 96 HOH HOH . D 4 HOH A 24 2124 68 HOH HOH . D 4 HOH A 25 2125 76 HOH HOH . D 4 HOH A 26 2126 14 HOH HOH . D 4 HOH A 27 2127 99 HOH HOH . D 4 HOH A 28 2128 20 HOH HOH . D 4 HOH A 29 2129 73 HOH HOH . D 4 HOH A 30 2130 72 HOH HOH . D 4 HOH A 31 2131 22 HOH HOH . D 4 HOH A 32 2132 85 HOH HOH . D 4 HOH A 33 2133 78 HOH HOH . D 4 HOH A 34 2134 81 HOH HOH . D 4 HOH A 35 2135 45 HOH HOH . D 4 HOH A 36 2136 100 HOH HOH . D 4 HOH A 37 2137 75 HOH HOH . D 4 HOH A 38 2138 15 HOH HOH . D 4 HOH A 39 2139 21 HOH HOH . D 4 HOH A 40 2140 6 HOH HOH . D 4 HOH A 41 2141 92 HOH HOH . D 4 HOH A 42 2142 36 HOH HOH . D 4 HOH A 43 2143 24 HOH HOH . D 4 HOH A 44 2144 5 HOH HOH . D 4 HOH A 45 2145 109 HOH HOH . D 4 HOH A 46 2146 84 HOH HOH . D 4 HOH A 47 2147 61 HOH HOH . D 4 HOH A 48 2148 62 HOH HOH . D 4 HOH A 49 2149 65 HOH HOH . D 4 HOH A 50 2150 93 HOH HOH . D 4 HOH A 51 2151 49 HOH HOH . D 4 HOH A 52 2152 37 HOH HOH . D 4 HOH A 53 2153 108 HOH HOH . D 4 HOH A 54 2154 41 HOH HOH . D 4 HOH A 55 2155 107 HOH HOH . D 4 HOH A 56 2156 44 HOH HOH . D 4 HOH A 57 2157 13 HOH HOH . D 4 HOH A 58 2158 69 HOH HOH . E 4 HOH B 1 501 3 HOH HOH . E 4 HOH B 2 502 60 HOH HOH . E 4 HOH B 3 503 114 HOH HOH . E 4 HOH B 4 504 64 HOH HOH . E 4 HOH B 5 505 97 HOH HOH . E 4 HOH B 6 506 116 HOH HOH . E 4 HOH B 7 507 56 HOH HOH . E 4 HOH B 8 508 10 HOH HOH . E 4 HOH B 9 509 47 HOH HOH . E 4 HOH B 10 510 103 HOH HOH . E 4 HOH B 11 511 39 HOH HOH . E 4 HOH B 12 512 110 HOH HOH . E 4 HOH B 13 513 17 HOH HOH . E 4 HOH B 14 514 54 HOH HOH . E 4 HOH B 15 515 77 HOH HOH . E 4 HOH B 16 516 8 HOH HOH . E 4 HOH B 17 517 33 HOH HOH . E 4 HOH B 18 518 102 HOH HOH . E 4 HOH B 19 519 52 HOH HOH . E 4 HOH B 20 520 83 HOH HOH . E 4 HOH B 21 521 59 HOH HOH . E 4 HOH B 22 522 57 HOH HOH . E 4 HOH B 23 523 106 HOH HOH . E 4 HOH B 24 524 34 HOH HOH . E 4 HOH B 25 525 28 HOH HOH . E 4 HOH B 26 526 82 HOH HOH . E 4 HOH B 27 527 91 HOH HOH . E 4 HOH B 28 528 55 HOH HOH . E 4 HOH B 29 529 111 HOH HOH . E 4 HOH B 30 530 90 HOH HOH . E 4 HOH B 31 531 30 HOH HOH . E 4 HOH B 32 532 18 HOH HOH . E 4 HOH B 33 533 16 HOH HOH . E 4 HOH B 34 534 117 HOH HOH . E 4 HOH B 35 535 58 HOH HOH . E 4 HOH B 36 536 105 HOH HOH . E 4 HOH B 37 537 70 HOH HOH . E 4 HOH B 38 538 51 HOH HOH . E 4 HOH B 39 539 50 HOH HOH . E 4 HOH B 40 540 43 HOH HOH . E 4 HOH B 41 541 89 HOH HOH . E 4 HOH B 42 542 88 HOH HOH . E 4 HOH B 43 543 38 HOH HOH . E 4 HOH B 44 544 112 HOH HOH . E 4 HOH B 45 545 104 HOH HOH . E 4 HOH B 46 546 48 HOH HOH . E 4 HOH B 47 547 25 HOH HOH . E 4 HOH B 48 548 80 HOH HOH . E 4 HOH B 49 549 7 HOH HOH . E 4 HOH B 50 550 87 HOH HOH . E 4 HOH B 51 551 23 HOH HOH . E 4 HOH B 52 552 94 HOH HOH . E 4 HOH B 53 553 46 HOH HOH . E 4 HOH B 54 554 101 HOH HOH . E 4 HOH B 55 555 98 HOH HOH . E 4 HOH B 56 556 113 HOH HOH . E 4 HOH B 57 557 9 HOH HOH . E 4 HOH B 58 558 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 V4X . . . C 3 -4.607 16.272 -37.262 0.56 20 0 N1 V4X 401 B 1 HETATM 2 C C1 V4X . . . C 3 1.77 14.081 -37.228 0.56 20 0 C1 V4X 401 B 1 HETATM 3 C C5 V4X . . . C 3 -2.853 14.919 -35.948 0.56 20 0 C5 V4X 401 B 1 HETATM 4 C C6 V4X . . . C 3 -3.839 15.666 -36.669 0.56 20 0 C6 V4X 401 B 1 HETATM 5 C C4 V4X . . . C 3 -1.5 15.466 -36.37 0.56 20 0 C4 V4X 401 B 1 HETATM 6 C C3 V4X . . . C 3 -0.782 13.179 -36.665 0.56 20 0 C3 V4X 401 B 1 HETATM 7 C C2 V4X . . . C 3 0.163 12.373 -35.786 0.56 20 0 C2 V4X 401 B 1 HETATM 8 O O V4X . . . C 3 -1.328 16.633 -36.564 0.56 20 0 O V4X 401 B 1 HETATM 9 N N V4X . . . C 3 -0.472 14.608 -36.54 0.56 20 0 N V4X 401 B 1 HETATM 10 C C V4X . . . C 3 0.55 15.017 -37.44 0.56 20 0 C V4X 401 B 1 HETATM 11 S S V4X . . . C 3 1.731 13.214 -35.662 0.56 20 0 S V4X 401 B 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 11 #