data_5SUD # _model_server_result.job_id 52sMr8JCopXknO8VVUs1qQ _model_server_result.datetime_utc '2024-11-16 07:48:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sud # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5SUD # _exptl.entry_id 5SUD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 188.226 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(2R)-2-cyanopropyl]benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.55 _cell.angle_gamma 90 _cell.entry_id 5SUD _cell.length_a 88.319 _cell.length_b 82.042 _cell.length_c 93.67 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SUD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C11 H12 N2 O' _chem_comp.formula_weight 188.226 _chem_comp.id V7C _chem_comp.mon_nstd_flag . _chem_comp.name N-[(2R)-2-cyanopropyl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C10 V7C trip 358 n n C10 C1 V7C sing 359 n n C C1 V7C sing 360 n n C1 C2 V7C sing 361 n n C2 N V7C sing 362 n n N C3 V7C sing 363 n n O C3 V7C doub 364 n n C3 C4 V7C sing 365 n n C4 C5 V7C doub 366 n y C4 C9 V7C sing 367 n y C5 C6 V7C sing 368 n y C9 C8 V7C doub 369 n y C6 C7 V7C doub 370 n y C8 C7 V7C sing 371 n y C7 H1 V7C sing 372 n n C8 H2 V7C sing 373 n n C9 H3 V7C sing 374 n n C1 H4 V7C sing 375 n n C5 H5 V7C sing 376 n n C6 H6 V7C sing 377 n n C2 H7 V7C sing 378 n n C2 H8 V7C sing 379 n n C H9 V7C sing 380 n n C H10 V7C sing 381 n n C H11 V7C sing 382 n n N H12 V7C sing 383 n n # _atom_sites.entry_id 5SUD _atom_sites.fract_transf_matrix[1][1] 0.011323 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003799 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012189 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011261 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 V7C B 1 401 401 V7C XXX . D 3 V7C B 1 402 501 V7C XXX . E 4 HOH A 1 2101 104 HOH HOH . E 4 HOH A 2 2102 28 HOH HOH . E 4 HOH A 3 2103 76 HOH HOH . E 4 HOH A 4 2104 6 HOH HOH . E 4 HOH A 5 2105 99 HOH HOH . E 4 HOH A 6 2106 107 HOH HOH . E 4 HOH A 7 2107 126 HOH HOH . E 4 HOH A 8 2108 8 HOH HOH . E 4 HOH A 9 2109 23 HOH HOH . E 4 HOH A 10 2110 129 HOH HOH . E 4 HOH A 11 2111 27 HOH HOH . E 4 HOH A 12 2112 16 HOH HOH . E 4 HOH A 13 2113 100 HOH HOH . E 4 HOH A 14 2114 43 HOH HOH . E 4 HOH A 15 2115 58 HOH HOH . E 4 HOH A 16 2116 105 HOH HOH . E 4 HOH A 17 2117 5 HOH HOH . E 4 HOH A 18 2118 72 HOH HOH . E 4 HOH A 19 2119 45 HOH HOH . E 4 HOH A 20 2120 19 HOH HOH . E 4 HOH A 21 2121 67 HOH HOH . E 4 HOH A 22 2122 122 HOH HOH . E 4 HOH A 23 2123 3 HOH HOH . E 4 HOH A 24 2124 17 HOH HOH . E 4 HOH A 25 2125 10 HOH HOH . E 4 HOH A 26 2126 81 HOH HOH . E 4 HOH A 27 2127 30 HOH HOH . E 4 HOH A 28 2128 110 HOH HOH . E 4 HOH A 29 2129 90 HOH HOH . E 4 HOH A 30 2130 93 HOH HOH . E 4 HOH A 31 2131 42 HOH HOH . E 4 HOH A 32 2132 49 HOH HOH . E 4 HOH A 33 2133 44 HOH HOH . E 4 HOH A 34 2134 71 HOH HOH . E 4 HOH A 35 2135 34 HOH HOH . E 4 HOH A 36 2136 135 HOH HOH . E 4 HOH A 37 2137 97 HOH HOH . E 4 HOH A 38 2138 94 HOH HOH . E 4 HOH A 39 2139 84 HOH HOH . E 4 HOH A 40 2140 9 HOH HOH . E 4 HOH A 41 2141 83 HOH HOH . E 4 HOH A 42 2142 41 HOH HOH . E 4 HOH A 43 2143 115 HOH HOH . E 4 HOH A 44 2144 116 HOH HOH . E 4 HOH A 45 2145 75 HOH HOH . E 4 HOH A 46 2146 103 HOH HOH . E 4 HOH A 47 2147 119 HOH HOH . E 4 HOH A 48 2148 60 HOH HOH . E 4 HOH A 49 2149 53 HOH HOH . E 4 HOH A 50 2150 61 HOH HOH . E 4 HOH A 51 2151 24 HOH HOH . E 4 HOH A 52 2152 36 HOH HOH . E 4 HOH A 53 2153 123 HOH HOH . E 4 HOH A 54 2154 29 HOH HOH . E 4 HOH A 55 2155 62 HOH HOH . E 4 HOH A 56 2156 108 HOH HOH . E 4 HOH A 57 2157 35 HOH HOH . E 4 HOH A 58 2158 91 HOH HOH . E 4 HOH A 59 2159 92 HOH HOH . E 4 HOH A 60 2160 98 HOH HOH . E 4 HOH A 61 2161 82 HOH HOH . E 4 HOH A 62 2162 54 HOH HOH . E 4 HOH A 63 2163 133 HOH HOH . E 4 HOH A 64 2164 113 HOH HOH . E 4 HOH A 65 2165 114 HOH HOH . E 4 HOH A 66 2166 128 HOH HOH . E 4 HOH A 67 2167 127 HOH HOH . E 4 HOH A 68 2168 77 HOH HOH . F 4 HOH B 1 501 52 HOH HOH . F 4 HOH B 2 502 25 HOH HOH . F 4 HOH B 3 503 69 HOH HOH . F 4 HOH B 4 504 137 HOH HOH . F 4 HOH B 5 505 121 HOH HOH . F 4 HOH B 6 506 131 HOH HOH . F 4 HOH B 7 507 37 HOH HOH . F 4 HOH B 8 508 39 HOH HOH . F 4 HOH B 9 509 130 HOH HOH . F 4 HOH B 10 510 86 HOH HOH . F 4 HOH B 11 511 2 HOH HOH . F 4 HOH B 12 512 124 HOH HOH . F 4 HOH B 13 513 64 HOH HOH . F 4 HOH B 14 514 132 HOH HOH . F 4 HOH B 15 515 22 HOH HOH . F 4 HOH B 16 516 73 HOH HOH . F 4 HOH B 17 517 88 HOH HOH . F 4 HOH B 18 518 65 HOH HOH . F 4 HOH B 19 519 51 HOH HOH . F 4 HOH B 20 520 13 HOH HOH . F 4 HOH B 21 521 85 HOH HOH . F 4 HOH B 22 522 21 HOH HOH . F 4 HOH B 23 523 47 HOH HOH . F 4 HOH B 24 524 80 HOH HOH . F 4 HOH B 25 525 109 HOH HOH . F 4 HOH B 26 526 11 HOH HOH . F 4 HOH B 27 527 125 HOH HOH . F 4 HOH B 28 528 95 HOH HOH . F 4 HOH B 29 529 89 HOH HOH . F 4 HOH B 30 530 12 HOH HOH . F 4 HOH B 31 531 70 HOH HOH . F 4 HOH B 32 532 38 HOH HOH . F 4 HOH B 33 533 20 HOH HOH . F 4 HOH B 34 534 66 HOH HOH . F 4 HOH B 35 535 111 HOH HOH . F 4 HOH B 36 536 112 HOH HOH . F 4 HOH B 37 537 101 HOH HOH . F 4 HOH B 38 538 134 HOH HOH . F 4 HOH B 39 539 14 HOH HOH . F 4 HOH B 40 540 79 HOH HOH . F 4 HOH B 41 541 32 HOH HOH . F 4 HOH B 42 542 102 HOH HOH . F 4 HOH B 43 543 117 HOH HOH . F 4 HOH B 44 544 26 HOH HOH . F 4 HOH B 45 545 55 HOH HOH . F 4 HOH B 46 546 48 HOH HOH . F 4 HOH B 47 547 68 HOH HOH . F 4 HOH B 48 548 118 HOH HOH . F 4 HOH B 49 549 74 HOH HOH . F 4 HOH B 50 550 18 HOH HOH . F 4 HOH B 51 551 40 HOH HOH . F 4 HOH B 52 552 63 HOH HOH . F 4 HOH B 53 553 87 HOH HOH . F 4 HOH B 54 554 57 HOH HOH . F 4 HOH B 55 555 56 HOH HOH . F 4 HOH B 56 556 7 HOH HOH . F 4 HOH B 57 557 136 HOH HOH . F 4 HOH B 58 558 106 HOH HOH . F 4 HOH B 59 559 78 HOH HOH . F 4 HOH B 60 560 46 HOH HOH . F 4 HOH B 61 561 50 HOH HOH . F 4 HOH B 62 562 120 HOH HOH . F 4 HOH B 63 563 33 HOH HOH . F 4 HOH B 64 564 59 HOH HOH . F 4 HOH B 65 565 31 HOH HOH . F 4 HOH B 66 566 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 V7C . . . C 3 13.451 12.64 -47.306 0.5 20 0 N1 V7C 401 B 1 HETATM 2 C C7 V7C . . . C 3 18.306 13.753 -39.655 0.5 20 0 C7 V7C 401 B 1 HETATM 3 C C8 V7C . . . C 3 17.105 14.385 -39.828 0.5 20 0 C8 V7C 401 B 1 HETATM 4 C C9 V7C . . . C 3 16.173 13.852 -40.689 0.5 20 0 C9 V7C 401 B 1 HETATM 5 C C1 V7C . . . C 3 15.263 11.995 -45.478 0.5 20 0 C1 V7C 401 B 1 HETATM 6 C C5 V7C . . . C 3 17.636 12.055 -41.222 0.5 20 0 C5 V7C 401 B 1 HETATM 7 C C6 V7C . . . C 3 18.573 12.588 -40.349 0.5 20 0 C6 V7C 401 B 1 HETATM 8 C C4 V7C . . . C 3 16.437 12.702 -41.393 0.5 20 0 C4 V7C 401 B 1 HETATM 9 C C3 V7C . . . C 3 15.464 12.219 -42.408 0.5 20 0 C3 V7C 401 B 1 HETATM 10 C C2 V7C . . . C 3 14.95 10.881 -44.408 0.5 20 0 C2 V7C 401 B 1 HETATM 11 C C10 V7C . . . C 3 14.245 12.302 -46.51 0.5 20 0 C10 V7C 401 B 1 HETATM 12 C C V7C . . . C 3 16.629 11.727 -46.09 0.5 20 0 C V7C 401 B 1 HETATM 13 N N V7C . . . C 3 15.881 11.298 -43.344 0.5 20 0 N V7C 401 B 1 HETATM 14 O O V7C . . . C 3 14.324 12.577 -42.422 0.5 20 0 O V7C 401 B 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #