data_5SUD
#
_model_server_result.job_id            '_Rw_gA4V_RmBB9vXHmmmJg' 
_model_server_result.datetime_utc      '2024-11-16 07:58:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5sud 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    5SUD 
#
_exptl.entry_id    5SUD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              188.226 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(2R)-2-cyanopropyl]benzamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.55 
_cell.angle_gamma         90 
_cell.entry_id            5SUD 
_cell.length_a            88.319 
_cell.length_b            82.042 
_cell.length_c            93.67 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5SUD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C11 H12 N2 O' 
_chem_comp.formula_weight    188.226 
_chem_comp.id                V7C 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(2R)-2-cyanopropyl]benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C10 V7C trip 358 n n 
C10 C1 V7C sing 359 n n 
C C1 V7C sing 360 n n 
C1 C2 V7C sing 361 n n 
C2 N V7C sing 362 n n 
N C3 V7C sing 363 n n 
O C3 V7C doub 364 n n 
C3 C4 V7C sing 365 n n 
C4 C5 V7C doub 366 n y 
C4 C9 V7C sing 367 n y 
C5 C6 V7C sing 368 n y 
C9 C8 V7C doub 369 n y 
C6 C7 V7C doub 370 n y 
C8 C7 V7C sing 371 n y 
C7 H1 V7C sing 372 n n 
C8 H2 V7C sing 373 n n 
C9 H3 V7C sing 374 n n 
C1 H4 V7C sing 375 n n 
C5 H5 V7C sing 376 n n 
C6 H6 V7C sing 377 n n 
C2 H7 V7C sing 378 n n 
C2 H8 V7C sing 379 n n 
C H9 V7C sing 380 n n 
C H10 V7C sing 381 n n 
C H11 V7C sing 382 n n 
N H12 V7C sing 383 n n 
#
_atom_sites.entry_id                     5SUD 
_atom_sites.fract_transf_matrix[1][1]    0.011323 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003799 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012189 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011261 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 V7C B 1 401 401 V7C XXX . 
D 3 V7C B 1 402 501 V7C XXX . 
E 4 HOH A 1 2101 104 HOH HOH . 
E 4 HOH A 2 2102 28 HOH HOH . 
E 4 HOH A 3 2103 76 HOH HOH . 
E 4 HOH A 4 2104 6 HOH HOH . 
E 4 HOH A 5 2105 99 HOH HOH . 
E 4 HOH A 6 2106 107 HOH HOH . 
E 4 HOH A 7 2107 126 HOH HOH . 
E 4 HOH A 8 2108 8 HOH HOH . 
E 4 HOH A 9 2109 23 HOH HOH . 
E 4 HOH A 10 2110 129 HOH HOH . 
E 4 HOH A 11 2111 27 HOH HOH . 
E 4 HOH A 12 2112 16 HOH HOH . 
E 4 HOH A 13 2113 100 HOH HOH . 
E 4 HOH A 14 2114 43 HOH HOH . 
E 4 HOH A 15 2115 58 HOH HOH . 
E 4 HOH A 16 2116 105 HOH HOH . 
E 4 HOH A 17 2117 5 HOH HOH . 
E 4 HOH A 18 2118 72 HOH HOH . 
E 4 HOH A 19 2119 45 HOH HOH . 
E 4 HOH A 20 2120 19 HOH HOH . 
E 4 HOH A 21 2121 67 HOH HOH . 
E 4 HOH A 22 2122 122 HOH HOH . 
E 4 HOH A 23 2123 3 HOH HOH . 
E 4 HOH A 24 2124 17 HOH HOH . 
E 4 HOH A 25 2125 10 HOH HOH . 
E 4 HOH A 26 2126 81 HOH HOH . 
E 4 HOH A 27 2127 30 HOH HOH . 
E 4 HOH A 28 2128 110 HOH HOH . 
E 4 HOH A 29 2129 90 HOH HOH . 
E 4 HOH A 30 2130 93 HOH HOH . 
E 4 HOH A 31 2131 42 HOH HOH . 
E 4 HOH A 32 2132 49 HOH HOH . 
E 4 HOH A 33 2133 44 HOH HOH . 
E 4 HOH A 34 2134 71 HOH HOH . 
E 4 HOH A 35 2135 34 HOH HOH . 
E 4 HOH A 36 2136 135 HOH HOH . 
E 4 HOH A 37 2137 97 HOH HOH . 
E 4 HOH A 38 2138 94 HOH HOH . 
E 4 HOH A 39 2139 84 HOH HOH . 
E 4 HOH A 40 2140 9 HOH HOH . 
E 4 HOH A 41 2141 83 HOH HOH . 
E 4 HOH A 42 2142 41 HOH HOH . 
E 4 HOH A 43 2143 115 HOH HOH . 
E 4 HOH A 44 2144 116 HOH HOH . 
E 4 HOH A 45 2145 75 HOH HOH . 
E 4 HOH A 46 2146 103 HOH HOH . 
E 4 HOH A 47 2147 119 HOH HOH . 
E 4 HOH A 48 2148 60 HOH HOH . 
E 4 HOH A 49 2149 53 HOH HOH . 
E 4 HOH A 50 2150 61 HOH HOH . 
E 4 HOH A 51 2151 24 HOH HOH . 
E 4 HOH A 52 2152 36 HOH HOH . 
E 4 HOH A 53 2153 123 HOH HOH . 
E 4 HOH A 54 2154 29 HOH HOH . 
E 4 HOH A 55 2155 62 HOH HOH . 
E 4 HOH A 56 2156 108 HOH HOH . 
E 4 HOH A 57 2157 35 HOH HOH . 
E 4 HOH A 58 2158 91 HOH HOH . 
E 4 HOH A 59 2159 92 HOH HOH . 
E 4 HOH A 60 2160 98 HOH HOH . 
E 4 HOH A 61 2161 82 HOH HOH . 
E 4 HOH A 62 2162 54 HOH HOH . 
E 4 HOH A 63 2163 133 HOH HOH . 
E 4 HOH A 64 2164 113 HOH HOH . 
E 4 HOH A 65 2165 114 HOH HOH . 
E 4 HOH A 66 2166 128 HOH HOH . 
E 4 HOH A 67 2167 127 HOH HOH . 
E 4 HOH A 68 2168 77 HOH HOH . 
F 4 HOH B 1 501 52 HOH HOH . 
F 4 HOH B 2 502 25 HOH HOH . 
F 4 HOH B 3 503 69 HOH HOH . 
F 4 HOH B 4 504 137 HOH HOH . 
F 4 HOH B 5 505 121 HOH HOH . 
F 4 HOH B 6 506 131 HOH HOH . 
F 4 HOH B 7 507 37 HOH HOH . 
F 4 HOH B 8 508 39 HOH HOH . 
F 4 HOH B 9 509 130 HOH HOH . 
F 4 HOH B 10 510 86 HOH HOH . 
F 4 HOH B 11 511 2 HOH HOH . 
F 4 HOH B 12 512 124 HOH HOH . 
F 4 HOH B 13 513 64 HOH HOH . 
F 4 HOH B 14 514 132 HOH HOH . 
F 4 HOH B 15 515 22 HOH HOH . 
F 4 HOH B 16 516 73 HOH HOH . 
F 4 HOH B 17 517 88 HOH HOH . 
F 4 HOH B 18 518 65 HOH HOH . 
F 4 HOH B 19 519 51 HOH HOH . 
F 4 HOH B 20 520 13 HOH HOH . 
F 4 HOH B 21 521 85 HOH HOH . 
F 4 HOH B 22 522 21 HOH HOH . 
F 4 HOH B 23 523 47 HOH HOH . 
F 4 HOH B 24 524 80 HOH HOH . 
F 4 HOH B 25 525 109 HOH HOH . 
F 4 HOH B 26 526 11 HOH HOH . 
F 4 HOH B 27 527 125 HOH HOH . 
F 4 HOH B 28 528 95 HOH HOH . 
F 4 HOH B 29 529 89 HOH HOH . 
F 4 HOH B 30 530 12 HOH HOH . 
F 4 HOH B 31 531 70 HOH HOH . 
F 4 HOH B 32 532 38 HOH HOH . 
F 4 HOH B 33 533 20 HOH HOH . 
F 4 HOH B 34 534 66 HOH HOH . 
F 4 HOH B 35 535 111 HOH HOH . 
F 4 HOH B 36 536 112 HOH HOH . 
F 4 HOH B 37 537 101 HOH HOH . 
F 4 HOH B 38 538 134 HOH HOH . 
F 4 HOH B 39 539 14 HOH HOH . 
F 4 HOH B 40 540 79 HOH HOH . 
F 4 HOH B 41 541 32 HOH HOH . 
F 4 HOH B 42 542 102 HOH HOH . 
F 4 HOH B 43 543 117 HOH HOH . 
F 4 HOH B 44 544 26 HOH HOH . 
F 4 HOH B 45 545 55 HOH HOH . 
F 4 HOH B 46 546 48 HOH HOH . 
F 4 HOH B 47 547 68 HOH HOH . 
F 4 HOH B 48 548 118 HOH HOH . 
F 4 HOH B 49 549 74 HOH HOH . 
F 4 HOH B 50 550 18 HOH HOH . 
F 4 HOH B 51 551 40 HOH HOH . 
F 4 HOH B 52 552 63 HOH HOH . 
F 4 HOH B 53 553 87 HOH HOH . 
F 4 HOH B 54 554 57 HOH HOH . 
F 4 HOH B 55 555 56 HOH HOH . 
F 4 HOH B 56 556 7 HOH HOH . 
F 4 HOH B 57 557 136 HOH HOH . 
F 4 HOH B 58 558 106 HOH HOH . 
F 4 HOH B 59 559 78 HOH HOH . 
F 4 HOH B 60 560 46 HOH HOH . 
F 4 HOH B 61 561 50 HOH HOH . 
F 4 HOH B 62 562 120 HOH HOH . 
F 4 HOH B 63 563 33 HOH HOH . 
F 4 HOH B 64 564 59 HOH HOH . 
F 4 HOH B 65 565 31 HOH HOH . 
F 4 HOH B 66 566 96 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 V7C . . . D 3 6.645 1.588 -7.674 0.38 20 0 N1 V7C 402 B 1 
HETATM 2 C C7 V7C . . . D 3 11.273 1.335 -12.51 0.38 20 0 C7 V7C 402 B 1 
HETATM 3 C C8 V7C . . . D 3 11.194 0.023 -12.169 0.38 20 0 C8 V7C 402 B 1 
HETATM 4 C C9 V7C . . . D 3 10.787 -0.349 -10.907 0.38 20 0 C9 V7C 402 B 1 
HETATM 5 C C1 V7C . . . D 3 8.449 1.694 -5.851 0.38 20 0 C1 V7C 402 B 1 
HETATM 6 C C5 V7C . . . D 3 10.501 1.953 -10.336 0.38 20 0 C5 V7C 402 B 1 
HETATM 7 C C6 V7C . . . D 3 10.93 2.297 -11.592 0.38 20 0 C6 V7C 402 B 1 
HETATM 8 C C4 V7C . . . D 3 10.431 0.624 -9.983 0.38 20 0 C4 V7C 402 B 1 
HETATM 9 C C3 V7C . . . D 3 9.941 0.244 -8.625 0.38 20 0 C3 V7C 402 B 1 
HETATM 10 C C2 V7C . . . D 3 9.668 0.869 -6.292 0.38 20 0 C2 V7C 402 B 1 
HETATM 11 C C10 V7C . . . D 3 7.431 1.633 -6.866 0.38 20 0 C10 V7C 402 B 1 
HETATM 12 C C V7C . . . D 3 8.852 3.143 -5.67 0.38 20 0 C V7C 402 B 1 
HETATM 13 N N V7C . . . D 3 10.103 1.177 -7.633 0.38 20 0 N V7C 402 B 1 
HETATM 14 O O V7C . . . D 3 9.411 -0.812 -8.387 0.38 20 0 O V7C 402 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#