data_5SUL
#
_model_server_result.job_id            cdBaOCC3kamNUB4gV4HBQQ 
_model_server_result.datetime_utc      '2024-10-10 06:28:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5sul 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":801}' 
#
_entry.id    5SUL 
#
_exptl.entry_id    5SUL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              324.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "URIDINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5SUL 
_cell.length_a            122.447 
_cell.length_b            122.447 
_cell.length_c            279.361 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5SUL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C9 H13 N2 O9 P' 
_chem_comp.formula_weight    324.181 
_chem_comp.id                U5P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "URIDINE-5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 U5P sing 356 n n 
N1 C6 U5P sing 357 n n 
N1 C1' U5P sing 358 n n 
C2 N3 U5P sing 359 n n 
C2 O2 U5P doub 360 n n 
N3 C4 U5P sing 361 n n 
N3 HN3 U5P sing 362 n n 
C4 C5 U5P sing 363 n n 
C4 O4 U5P doub 364 n n 
C5 C6 U5P doub 365 n n 
C5 H5 U5P sing 366 n n 
C6 H6 U5P sing 367 n n 
C1' C2' U5P sing 368 n n 
C1' O4' U5P sing 369 n n 
C1' H1' U5P sing 370 n n 
C2' O2' U5P sing 371 n n 
C2' C3' U5P sing 372 n n 
C2' H2' U5P sing 373 n n 
O2' HO2' U5P sing 374 n n 
C3' C4' U5P sing 375 n n 
C3' O3' U5P sing 376 n n 
C3' H3' U5P sing 377 n n 
C4' O4' U5P sing 378 n n 
C4' C5' U5P sing 379 n n 
C4' H4' U5P sing 380 n n 
O3' HO3' U5P sing 381 n n 
C5' O5' U5P sing 382 n n 
C5' "H5'1" U5P sing 383 n n 
C5' "H5'2" U5P sing 384 n n 
O5' P U5P sing 385 n n 
P O1P U5P doub 386 n n 
P O2P U5P sing 387 n n 
P O3P U5P sing 388 n n 
O2P HOP2 U5P sing 389 n n 
O3P HOP3 U5P sing 390 n n 
#
_atom_sites.entry_id                     5SUL 
_atom_sites.fract_transf_matrix[1][1]    0.008167 
_atom_sites.fract_transf_matrix[1][2]    0.004715 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00943 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00358 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 UDP A 1 801 801 UDP UDP . 
D 3 U5P B 1 801 801 U5P U5P . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 U5P . . . D 3 -0.272 16.819 16.996 1 104.56 ? N1 U5P 801 B 1 
HETATM 2 C C2 U5P . . . D 3 0.938 16.224 17.487 1 114.28 ? C2 U5P 801 B 1 
HETATM 3 N N3 U5P . . . D 3 1.81 15.671 16.61 1 102.35 ? N3 U5P 801 B 1 
HETATM 4 C C4 U5P . . . D 3 1.551 15.668 15.291 1 111.52 ? C4 U5P 801 B 1 
HETATM 5 C C5 U5P . . . D 3 0.365 16.242 14.781 1 116.86 ? C5 U5P 801 B 1 
HETATM 6 C C6 U5P . . . D 3 -0.551 16.82 15.677 1 108.2 ? C6 U5P 801 B 1 
HETATM 7 O O2 U5P . . . D 3 1.267 16.191 18.827 1 120.87 ? O2 U5P 801 B 1 
HETATM 8 O O4 U5P . . . D 3 2.49 15.092 14.5 1 115.97 ? O4 U5P 801 B 1 
HETATM 9 C C1' U5P . . . D 3 -1.227 17.408 17.927 1 98.94 ? C1' U5P 801 B 1 
HETATM 10 C C2' U5P . . . D 3 -1.467 16.413 19.05 1 98.81 ? C2' U5P 801 B 1 
HETATM 11 O O2' U5P . . . D 3 -2.614 15.593 18.775 1 103.86 ? O2' U5P 801 B 1 
HETATM 12 C C3' U5P . . . D 3 -1.512 17.238 20.339 1 93.03 ? C3' U5P 801 B 1 
HETATM 13 C C4' U5P . . . D 3 -1.123 18.636 19.943 1 94.7 ? C4' U5P 801 B 1 
HETATM 14 O O3' U5P . . . D 3 -2.806 17.31 20.914 1 88.17 ? O3' U5P 801 B 1 
HETATM 15 O O4' U5P . . . D 3 -0.676 18.554 18.58 1 96.69 ? O4' U5P 801 B 1 
HETATM 16 C C5' U5P . . . D 3 -0.009 19.135 20.851 1 118.74 ? C5' U5P 801 B 1 
HETATM 17 O O5' U5P . . . D 3 -0.473 19.595 22.13 1 130.03 ? O5' U5P 801 B 1 
HETATM 18 P P U5P . . . D 3 0.337 20.698 23.018 1 127.53 ? P U5P 801 B 1 
HETATM 19 O O1P U5P . . . D 3 1.726 20.897 22.421 1 117.81 ? O1P U5P 801 B 1 
HETATM 20 O O2P U5P . . . D 3 0.306 20.085 24.417 1 114.23 ? O2P U5P 801 B 1 
HETATM 21 O O3P U5P . . . D 3 -0.486 21.942 22.82 1 113.25 ? O3P U5P 801 B 1 
#
_model_server_stats.io_time_ms              78 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           21 
#