data_5SUP # _model_server_result.job_id duAg1ij6qwvBB-4QqKrZ0A _model_server_result.datetime_utc '2025-06-26 22:20:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sup # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1001}' # _entry.id 5SUP # _exptl.entry_id 5SUP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 66.007 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BERYLLIUM TRIFLUORIDE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5SUP _cell.length_a 99.346 _cell.length_b 99.346 _cell.length_c 247.469 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SUP _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 PISA trimeric 3 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,G,J,K,L,S 1 1 B,D,I,M,N,O,T 2 1 C,F,H,P,Q,R,U 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 K N N ? 5 N N N ? 5 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 357 A LYS 413 1_555 A OE2 GLU 358 A GLU 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? metalc ? metalc1 J O2B ADP . A ADP 1000 1_555 K BE BEF . A BEF 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.625 ? metalc ? metalc2 J O1B ADP . A ADP 1000 1_555 L MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc3 L MG MG . A MG 1002 1_555 S O HOH . A HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc4 L MG MG . A MG 1002 1_555 S O HOH . A HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc5 L MG MG . A MG 1002 1_555 S O HOH . A HOH 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc6 L MG MG . A MG 1002 1_555 S O HOH . A HOH 1111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc7 M O3B ADP . B ADP 2000 1_555 N BE BEF . B BEF 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.569 ? metalc ? metalc8 M O2B ADP . B ADP 2000 1_555 O MG MG . B MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc9 O MG MG . B MG 2002 1_555 T O HOH . B HOH 2101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc10 O MG MG . B MG 2002 1_555 T O HOH . B HOH 2103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc11 O MG MG . B MG 2002 1_555 T O HOH . B HOH 2106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc12 O MG MG . B MG 2002 1_555 T O HOH . B HOH 2108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc13 P O2B ADP . C ADP 3000 1_555 Q BE BEF . C BEF 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? metalc ? metalc14 P O1B ADP . C ADP 3000 1_555 R MG MG . C MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc15 R MG MG . C MG 3002 1_555 U O HOH . C HOH 3101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc16 R MG MG . C MG 3002 1_555 U O HOH . C HOH 3102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc17 R MG MG . C MG 3002 1_555 U O HOH . C HOH 3104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc18 R MG MG . C MG 3002 1_555 U O HOH . C HOH 3105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? # _chem_comp.formula 'Be F3 -1' _chem_comp.formula_weight 66.007 _chem_comp.id BEF _chem_comp.mon_nstd_flag . _chem_comp.name 'BERYLLIUM TRIFLUORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BE F1 BEF sing 114 n n BE F2 BEF sing 115 n n BE F3 BEF sing 116 n n # _atom_sites.entry_id 5SUP _atom_sites.fract_transf_matrix[1][1] 0.010066 _atom_sites.fract_transf_matrix[1][2] 0.005812 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011623 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004041 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 4 ADP A 1 1000 1000 ADP ADP . K 5 BEF A 1 1001 1001 BEF BEF . L 6 MG A 1 1002 1002 MG MG . M 4 ADP B 1 2000 2000 ADP ADP . N 5 BEF B 1 2001 2001 BEF BEF . O 6 MG B 1 2002 2002 MG MG . P 4 ADP C 1 3000 3000 ADP ADP . Q 5 BEF C 1 3001 3001 BEF BEF . R 6 MG C 1 3002 3002 MG MG . S 7 HOH A 1 1101 20 HOH HOH . S 7 HOH A 2 1102 5 HOH HOH . S 7 HOH A 3 1103 21 HOH HOH . S 7 HOH A 4 1104 6 HOH HOH . S 7 HOH A 5 1105 19 HOH HOH . S 7 HOH A 6 1106 16 HOH HOH . S 7 HOH A 7 1107 7 HOH HOH . S 7 HOH A 8 1108 22 HOH HOH . S 7 HOH A 9 1109 10 HOH HOH . S 7 HOH A 10 1110 18 HOH HOH . S 7 HOH A 11 1111 8 HOH HOH . S 7 HOH A 12 1112 9 HOH HOH . S 7 HOH A 13 1113 23 HOH HOH . T 7 HOH B 1 2101 3 HOH HOH . T 7 HOH B 2 2102 17 HOH HOH . T 7 HOH B 3 2103 2 HOH HOH . T 7 HOH B 4 2104 26 HOH HOH . T 7 HOH B 5 2105 25 HOH HOH . T 7 HOH B 6 2106 1 HOH HOH . T 7 HOH B 7 2107 24 HOH HOH . T 7 HOH B 8 2108 4 HOH HOH . T 7 HOH B 9 2109 27 HOH HOH . U 7 HOH C 1 3101 12 HOH HOH . U 7 HOH C 2 3102 11 HOH HOH . U 7 HOH C 3 3103 15 HOH HOH . U 7 HOH C 4 3104 13 HOH HOH . U 7 HOH C 5 3105 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 BE BE BEF . . . K 5 71.161 80.879 100.496 1 34.57 ? BE BEF 1001 A 1 HETATM 2 F F1 BEF . . . K 5 72.075 79.697 100.151 1 41.81 ? F1 BEF 1001 A 1 HETATM 3 F F2 BEF . . . K 5 70.391 80.629 101.833 1 34.37 ? F2 BEF 1001 A 1 HETATM 4 F F3 BEF . . . K 5 72.012 82.16 100.669 1 38.29 ? F3 BEF 1001 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #