data_5SUR # _model_server_result.job_id 4PX5D4DT-_Idq9T4iPRenQ _model_server_result.datetime_utc '2024-10-10 08:24:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sur # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 5SUR # _exptl.entry_id 5SUR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5SUR _cell.length_a 57.401 _cell.length_b 57.401 _cell.length_c 94.14 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SUR _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA 24-meric 24 software_defined_assembly 1 PISA dodecameric 12 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,C,D,H,I,J,K,L,N,O,P 1 1,2,3,10,11,12 A,E,F,G,M 1 4,5,6,7,8,9 B,C,D,H,I,J,K,L,N,O,P 2 1,2,3 A,E,F,G,M 2 7,8,9 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -28.7005 49.710724 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -57.401 0 0 4 'crystal symmetry operation' 4_454 -x-1,-y,z-1/2 -1 0 0 0 -1 0 0 0 1 -57.401 0 -47.07 5 'crystal symmetry operation' 5_554 y,-x+y,z-1/2 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 -47.07 6 'crystal symmetry operation' 6_564 x-y,x+1,z-1/2 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 -28.7005 49.710724 -47.07 7 'crystal symmetry operation' 7_565 y,x+1,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -28.7005 49.710724 0 8 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 9 'crystal symmetry operation' 9_455 -x-1,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 -57.401 0 0 10 'crystal symmetry operation' 10_554 -y,-x,-z-1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -47.07 11 'crystal symmetry operation' 11_454 -x+y-1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 -57.401 0 -47.07 12 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -28.7005 49.710724 -47.07 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 2 1_555 B SG CYS 6 B CYS 6 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf2 A SG CYS 6 A CYS 6 1_555 D SG CYS 2 D CYS 2 7_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 2 B CYS 2 1_555 D SG CYS 6 D CYS 6 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 C SG CYS 2 C CYS 2 1_555 C SG CYS 6 C CYS 6 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 A C ORN 1 A ORN 1 1_555 A N CYS 2 A CYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? covale ? covale2 A NE ORN 1 A ORN 1 1_555 A C VAL 16 A VAL 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? covale ? covale3 A C PHE 4 A PHE 4 1_555 A N MEA 5 A MEA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MEA 5 A MEA 5 1_555 A N CYS 6 A CYS 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 A C ASP 8 A ASP 8 1_555 A NE ORN 9 A ORN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale6 A C ORN 9 A ORN 9 1_555 A N ALA 10 A ALA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? covale ? covale7 A C LEU 14 A LEU 14 1_555 A N ORN 15 A ORN 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale8 A C ORN 15 A ORN 15 1_555 A N VAL 16 A VAL 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 B C ORN 1 B ORN 1 1_555 B N CYS 2 B CYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale10 B NE ORN 1 B ORN 1 1_555 B C VAL 16 B VAL 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? covale ? covale11 B C PHE 4 B PHE 4 1_555 B N MEA 5 B MEA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 B C MEA 5 B MEA 5 1_555 B N CYS 6 B CYS 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 B C ASP 8 B ASP 8 1_555 B NE ORN 9 B ORN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? covale ? covale14 B C ORN 9 B ORN 9 1_555 B N ALA 10 B ALA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? covale ? covale15 B C LEU 14 B LEU 14 1_555 B N ORN 15 B ORN 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale16 B C ORN 15 B ORN 15 1_555 B N VAL 16 B VAL 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale17 C C ORN 1 C ORN 1 1_555 C N CYS 2 C CYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? covale ? covale18 C NE ORN 1 C ORN 1 1_555 C C VAL 16 C VAL 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale19 C C PHE 4 C PHE 4 1_555 C N MEA 5 C MEA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale20 C C MEA 5 C MEA 5 1_555 C N CYS 6 C CYS 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale21 C C ASP 8 C ASP 8 1_555 C NE ORN 9 C ORN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? covale ? covale22 C C ORN 9 C ORN 9 1_555 C N ALA 10 C ALA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? covale ? covale23 C C LEU 14 C LEU 14 1_555 C N ORN 15 C ORN 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale24 C C ORN 15 C ORN 15 1_555 C N VAL 16 C VAL 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale25 D C ORN 1 D ORN 1 1_555 D N CYS 2 D CYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? covale ? covale26 D NE ORN 1 D ORN 1 1_555 D C VAL 16 D VAL 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale27 D C PHE 4 D PHE 4 1_555 D N MEA 5 D MEA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale28 D C MEA 5 D MEA 5 1_555 D N CYS 6 D CYS 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale29 D C ASP 8 D ASP 8 1_555 D NE ORN 9 D ORN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale30 D C ORN 9 D ORN 9 1_555 D N ALA 10 D ALA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? covale ? covale31 D C LEU 14 D LEU 14 1_555 D N ORN 15 D ORN 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale32 D C ORN 15 D ORN 15 1_555 D N VAL 16 D VAL 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A OE1 GLU 7 A GLU 7 1_555 L NA NA . D NA 102 7_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc2 L NA NA . D NA 102 1_555 P O HOH . D HOH 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5SUR _atom_sites.fract_transf_matrix[1][1] 0.017421 _atom_sites.fract_transf_matrix[1][2] 0.010058 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020116 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010622 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NA A 1 101 3 NA NA . F 3 HEZ A 1 102 3 HEZ HEZ . G 3 HEZ A 1 103 4 HEZ HEZ . H 4 CL C 1 101 3 CL CL . I 3 HEZ C 1 102 1 HEZ HEZ . J 3 HEZ C 1 103 2 HEZ HEZ . K 4 CL D 1 101 4 CL CL . L 2 NA D 1 102 2 NA NA . M 5 HOH A 1 201 52 HOH HOH . M 5 HOH A 2 202 28 HOH HOH . M 5 HOH A 3 203 1 HOH HOH . M 5 HOH A 4 204 32 HOH HOH . M 5 HOH A 5 205 13 HOH HOH . M 5 HOH A 6 206 41 HOH HOH . M 5 HOH A 7 207 48 HOH HOH . M 5 HOH A 8 208 61 HOH HOH . N 5 HOH B 1 101 38 HOH HOH . N 5 HOH B 2 102 25 HOH HOH . N 5 HOH B 3 103 36 HOH HOH . N 5 HOH B 4 104 33 HOH HOH . N 5 HOH B 5 105 46 HOH HOH . N 5 HOH B 6 106 27 HOH HOH . N 5 HOH B 7 107 49 HOH HOH . N 5 HOH B 8 108 57 HOH HOH . N 5 HOH B 9 109 44 HOH HOH . N 5 HOH B 10 110 9 HOH HOH . N 5 HOH B 11 111 17 HOH HOH . N 5 HOH B 12 112 18 HOH HOH . N 5 HOH B 13 113 31 HOH HOH . N 5 HOH B 14 114 39 HOH HOH . O 5 HOH C 1 201 15 HOH HOH . O 5 HOH C 2 202 35 HOH HOH . O 5 HOH C 3 203 30 HOH HOH . O 5 HOH C 4 204 23 HOH HOH . O 5 HOH C 5 205 50 HOH HOH . O 5 HOH C 6 206 43 HOH HOH . O 5 HOH C 7 207 54 HOH HOH . P 5 HOH D 1 201 58 HOH HOH . P 5 HOH D 2 202 16 HOH HOH . P 5 HOH D 3 203 51 HOH HOH . P 5 HOH D 4 204 24 HOH HOH . P 5 HOH D 5 205 60 HOH HOH . P 5 HOH D 6 206 34 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x -33.914 _atom_site.Cartn_y -6.628 _atom_site.Cartn_z -10.113 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 71.78 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #