data_5SV1 # _model_server_result.job_id RSouJePoErzTM4_J2vJa3A _model_server_result.datetime_utc '2025-04-02 13:12:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sv1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":301}' # _entry.id 5SV1 # _exptl.entry_id 5SV1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 200.59 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MERCURY (II) ION' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SV1 _cell.length_a 104.942 _cell.length_b 196.748 _cell.length_c 210.599 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SV1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,K,M,N,O,P,Q 1 1 F,G,H,I,J,L,R,S,T,U,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 107 A ILE 107 1_555 A N MLY 108 A MLY 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C MLY 108 A MLY 108 1_555 A N GLU 109 A GLU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C ILE 107 B ILE 107 1_555 B N MLY 108 B MLY 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 B C MLY 108 B MLY 108 1_555 B N GLU 109 B GLU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale5 C C ILE 107 C ILE 107 1_555 C N MLY 108 C MLY 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 C C MLY 108 C MLY 108 1_555 C N GLU 109 C GLU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 D C ILE 107 D ILE 107 1_555 D N MLY 108 D MLY 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 D C MLY 108 D MLY 108 1_555 D N GLU 109 D GLU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale9 E C ILE 107 E ILE 107 1_555 E N MLY 108 E MLY 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 E C MLY 108 E MLY 108 1_555 E N GLU 109 E GLU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 F C ILE 107 F ILE 107 1_555 F N MLY 108 F MLY 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale12 F C MLY 108 F MLY 108 1_555 F N GLU 109 F GLU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale13 G C ILE 107 G ILE 107 1_555 G N MLY 108 G MLY 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale14 G C MLY 108 G MLY 108 1_555 G N GLU 109 G GLU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale15 H C ILE 107 H ILE 107 1_555 H N MLY 108 H MLY 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale16 H C MLY 108 H MLY 108 1_555 H N GLU 109 H GLU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale17 I C ILE 107 I ILE 107 1_555 I N MLY 108 I MLY 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale18 I C MLY 108 I MLY 108 1_555 I N GLU 109 I GLU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale19 J C ILE 107 J ILE 107 1_555 J N MLY 108 J MLY 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale20 J C MLY 108 J MLY 108 1_555 J N GLU 109 J GLU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A SG CYS 25 A CYS 25 1_555 M HG HG . A HG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc2 B SG CYS 25 B CYS 25 1_555 N HG HG . B HG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc3 C SG CYS 25 C CYS 25 1_555 O HG HG . C HG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc4 D SG CYS 25 D CYS 25 1_555 P HG HG . D HG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc5 E SG CYS 25 E CYS 25 1_555 Q HG HG . E HG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc6 F SG CYS 25 F CYS 25 1_555 R HG HG . F HG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc7 G SG CYS 25 G CYS 25 1_555 S HG HG . G HG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc8 H SG CYS 25 H CYS 25 1_555 T HG HG . H HG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc9 I SG CYS 25 I CYS 25 1_555 U HG HG . I HG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc10 J SG CYS 25 J CYS 25 1_555 V HG HG . J HG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? # _chem_comp.formula 'Hg 2' _chem_comp.formula_weight 200.59 _chem_comp.id HG _chem_comp.mon_nstd_flag . _chem_comp.name 'MERCURY (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5SV1 _atom_sites.fract_transf_matrix[1][1] 0.009529 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005083 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004748 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 HG A 1 301 1 HG HG . N 3 HG B 1 301 2 HG HG . O 3 HG C 1 301 3 HG HG . P 3 HG D 1 301 4 HG HG . Q 3 HG E 1 301 6 HG HG . R 3 HG F 1 301 5 HG HG . S 3 HG G 1 301 7 HG HG . T 3 HG H 1 301 8 HG HG . U 3 HG I 1 301 9 HG HG . V 3 HG J 1 301 10 HG HG . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol HG _atom_site.label_atom_id HG _atom_site.label_comp_id HG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id V _atom_site.label_entity_id 3 _atom_site.Cartn_x 111.691 _atom_site.Cartn_y 85.08 _atom_site.Cartn_z 75.878 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 593.67 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id HG _atom_site.auth_comp_id HG _atom_site.auth_seq_id 301 _atom_site.auth_asym_id J _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #