data_5SVC
#
_model_server_result.job_id            e40niGyN255JZJVL2hF85g 
_model_server_result.datetime_utc      '2024-11-20 17:40:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5svc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":801}' 
#
_entry.id    5SVC 
#
_exptl.entry_id    5SVC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.33 
_cell.angle_gamma         90 
_cell.entry_id            5SVC 
_cell.length_a            76.76 
_cell.length_b            265.159 
_cell.length_c            122.17 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5SVC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 150 A HIS 150 1_555 G MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? 
metalc ? metalc2 A OD1 ASP 153 A ASP 153 1_555 G MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc3 A OD2 ASP 153 A ASP 153 1_555 G MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc4 A ND1 HIS 175 A HIS 175 1_555 G MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc5 G MN MN . A MN 801 1_555 M O HOH . A HOH 942 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc6 C SG CYS 74 C CYS 74 1_555 I ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? 
metalc ? metalc7 C SG CYS 76 C CYS 76 1_555 I ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc8 C SG CYS 124 C CYS 124 1_555 I ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc9 C SG CYS 127 C CYS 127 1_555 I ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc10 D NE2 HIS 150 D HIS 150 1_555 J MN MN . D MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
metalc ? metalc11 D OD1 ASP 153 D ASP 153 1_555 J MN MN . D MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc12 D OD2 ASP 153 D ASP 153 1_555 J MN MN . D MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc13 D ND1 HIS 175 D HIS 175 1_555 J MN MN . D MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc14 J MN MN . D MN 801 1_555 P O HOH . D HOH 940 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc15 F SG CYS 74 F CYS 74 1_555 L ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc16 F SG CYS 76 F CYS 76 1_555 L ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc17 F SG CYS 124 F CYS 124 1_555 L ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc18 F SG CYS 127 F CYS 127 1_555 L ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5SVC 
_atom_sites.fract_transf_matrix[1][1]    0.013028 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00053 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003771 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008192 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 MN A 1 801 4 MN MN . 
H 5 SO4 B 1 801 1 SO4 SO4 . 
I 6 ZN C 1 201 1 ZN ZN . 
J 4 MN D 1 801 3 MN MN . 
K 5 SO4 E 1 801 2 SO4 SO4 . 
L 6 ZN F 1 201 2 ZN ZN . 
M 7 HOH A 1 901 87 HOH HOH . 
M 7 HOH A 2 902 24 HOH HOH . 
M 7 HOH A 3 903 72 HOH HOH . 
M 7 HOH A 4 904 16 HOH HOH . 
M 7 HOH A 5 905 29 HOH HOH . 
M 7 HOH A 6 906 95 HOH HOH . 
M 7 HOH A 7 907 6 HOH HOH . 
M 7 HOH A 8 908 57 HOH HOH . 
M 7 HOH A 9 909 88 HOH HOH . 
M 7 HOH A 10 910 21 HOH HOH . 
M 7 HOH A 11 911 89 HOH HOH . 
M 7 HOH A 12 912 110 HOH HOH . 
M 7 HOH A 13 913 37 HOH HOH . 
M 7 HOH A 14 914 109 HOH HOH . 
M 7 HOH A 15 915 99 HOH HOH . 
M 7 HOH A 16 916 35 HOH HOH . 
M 7 HOH A 17 917 17 HOH HOH . 
M 7 HOH A 18 918 50 HOH HOH . 
M 7 HOH A 19 919 65 HOH HOH . 
M 7 HOH A 20 920 86 HOH HOH . 
M 7 HOH A 21 921 111 HOH HOH . 
M 7 HOH A 22 922 9 HOH HOH . 
M 7 HOH A 23 923 103 HOH HOH . 
M 7 HOH A 24 924 56 HOH HOH . 
M 7 HOH A 25 925 70 HOH HOH . 
M 7 HOH A 26 926 63 HOH HOH . 
M 7 HOH A 27 927 22 HOH HOH . 
M 7 HOH A 28 928 28 HOH HOH . 
M 7 HOH A 29 929 84 HOH HOH . 
M 7 HOH A 30 930 100 HOH HOH . 
M 7 HOH A 31 931 10 HOH HOH . 
M 7 HOH A 32 932 101 HOH HOH . 
M 7 HOH A 33 933 54 HOH HOH . 
M 7 HOH A 34 934 98 HOH HOH . 
M 7 HOH A 35 935 36 HOH HOH . 
M 7 HOH A 36 936 27 HOH HOH . 
M 7 HOH A 37 937 30 HOH HOH . 
M 7 HOH A 38 938 49 HOH HOH . 
M 7 HOH A 39 939 38 HOH HOH . 
M 7 HOH A 40 940 107 HOH HOH . 
M 7 HOH A 41 941 55 HOH HOH . 
M 7 HOH A 42 942 3 HOH HOH . 
N 7 HOH B 1 901 90 HOH HOH . 
N 7 HOH B 2 902 34 HOH HOH . 
N 7 HOH B 3 903 23 HOH HOH . 
N 7 HOH B 4 904 46 HOH HOH . 
N 7 HOH B 5 905 106 HOH HOH . 
N 7 HOH B 6 906 64 HOH HOH . 
N 7 HOH B 7 907 104 HOH HOH . 
N 7 HOH B 8 908 82 HOH HOH . 
N 7 HOH B 9 909 43 HOH HOH . 
N 7 HOH B 10 910 83 HOH HOH . 
O 7 HOH C 1 301 32 HOH HOH . 
O 7 HOH C 2 302 61 HOH HOH . 
O 7 HOH C 3 303 102 HOH HOH . 
O 7 HOH C 4 304 67 HOH HOH . 
P 7 HOH D 1 901 108 HOH HOH . 
P 7 HOH D 2 902 58 HOH HOH . 
P 7 HOH D 3 903 13 HOH HOH . 
P 7 HOH D 4 904 75 HOH HOH . 
P 7 HOH D 5 905 81 HOH HOH . 
P 7 HOH D 6 906 68 HOH HOH . 
P 7 HOH D 7 907 92 HOH HOH . 
P 7 HOH D 8 908 42 HOH HOH . 
P 7 HOH D 9 909 25 HOH HOH . 
P 7 HOH D 10 910 12 HOH HOH . 
P 7 HOH D 11 911 4 HOH HOH . 
P 7 HOH D 12 912 53 HOH HOH . 
P 7 HOH D 13 913 73 HOH HOH . 
P 7 HOH D 14 914 79 HOH HOH . 
P 7 HOH D 15 915 5 HOH HOH . 
P 7 HOH D 16 916 97 HOH HOH . 
P 7 HOH D 17 917 76 HOH HOH . 
P 7 HOH D 18 918 1 HOH HOH . 
P 7 HOH D 19 919 31 HOH HOH . 
P 7 HOH D 20 920 7 HOH HOH . 
P 7 HOH D 21 921 78 HOH HOH . 
P 7 HOH D 22 922 11 HOH HOH . 
P 7 HOH D 23 923 51 HOH HOH . 
P 7 HOH D 24 924 19 HOH HOH . 
P 7 HOH D 25 925 41 HOH HOH . 
P 7 HOH D 26 926 69 HOH HOH . 
P 7 HOH D 27 927 40 HOH HOH . 
P 7 HOH D 28 928 93 HOH HOH . 
P 7 HOH D 29 929 77 HOH HOH . 
P 7 HOH D 30 930 26 HOH HOH . 
P 7 HOH D 31 931 59 HOH HOH . 
P 7 HOH D 32 932 45 HOH HOH . 
P 7 HOH D 33 933 8 HOH HOH . 
P 7 HOH D 34 934 112 HOH HOH . 
P 7 HOH D 35 935 18 HOH HOH . 
P 7 HOH D 36 936 44 HOH HOH . 
P 7 HOH D 37 937 71 HOH HOH . 
P 7 HOH D 38 938 47 HOH HOH . 
P 7 HOH D 39 939 20 HOH HOH . 
P 7 HOH D 40 940 2 HOH HOH . 
Q 7 HOH E 1 901 91 HOH HOH . 
Q 7 HOH E 2 902 52 HOH HOH . 
Q 7 HOH E 3 903 14 HOH HOH . 
Q 7 HOH E 4 904 94 HOH HOH . 
Q 7 HOH E 5 905 74 HOH HOH . 
Q 7 HOH E 6 906 96 HOH HOH . 
Q 7 HOH E 7 907 39 HOH HOH . 
Q 7 HOH E 8 908 15 HOH HOH . 
Q 7 HOH E 9 909 62 HOH HOH . 
Q 7 HOH E 10 910 85 HOH HOH . 
Q 7 HOH E 11 911 60 HOH HOH . 
R 7 HOH F 1 301 48 HOH HOH . 
R 7 HOH F 2 302 66 HOH HOH . 
R 7 HOH F 3 303 33 HOH HOH . 
R 7 HOH F 4 304 105 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -34.421 
_atom_site.Cartn_y               -49.698 
_atom_site.Cartn_z               -33.938 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        31.99 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           801 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#