data_5SVE # _model_server_result.job_id A0afdgoXuNr8RlUPkY7ddQ _model_server_result.datetime_utc '2025-03-13 21:39:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sve # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 5SVE # _exptl.entry_id 5SVE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SVE _cell.length_a 57.679 _cell.length_b 106.046 _cell.length_c 111.913 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SVE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N ? 6 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 90 A ASP 90 1_555 D FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc2 A NE2 HIS 92 A HIS 92 1_555 D FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc3 A OD2 ASP 118 A ASP 118 1_555 D FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc4 A OD2 ASP 118 A ASP 118 1_555 E ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc5 A OD1 ASN 150 A ASN 150 1_555 E ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc6 A NE2 HIS 199 A HIS 199 1_555 E ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc7 A ND1 HIS 281 A HIS 281 1_555 E ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc8 D FE FE . A FE 401 1_555 J O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc9 D FE FE . A FE 401 1_555 J O HOH . A HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc10 E ZN ZN . A ZN 402 1_555 J O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc11 B OD1 ASP 31 B ASP 30 1_555 H CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc12 B OD1 ASP 33 B ASP 32 1_555 H CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc13 B OG SER 35 B SER 34 1_555 H CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc14 B O SER 37 B SER 36 1_555 H CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc15 B OE1 GLU 42 B GLU 41 1_555 H CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc16 B OE2 GLU 42 B GLU 41 1_555 H CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc17 B OD1 ASP 63 B ASP 62 1_555 F CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc18 B OD1 ASP 65 B ASP 64 1_555 F CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc19 B OD2 ASP 65 B ASP 64 1_555 F CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.113 ? metalc ? metalc20 B OD1 ASN 67 B ASN 66 1_555 F CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc21 B O GLU 69 B GLU 68 1_555 F CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc22 B OE1 GLU 74 B GLU 73 1_555 F CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc23 B OE2 GLU 74 B GLU 73 1_555 F CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc24 B OD1 ASP 100 B ASP 99 1_555 I CA CA . B CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc25 B OD1 ASP 102 B ASP 101 1_555 I CA CA . B CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc26 B OD1 ASP 104 B ASP 103 1_555 I CA CA . B CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc27 B O TYR 106 B TYR 105 1_555 I CA CA . B CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc28 B OE1 GLU 111 B GLU 110 1_555 I CA CA . B CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc29 B OE2 GLU 111 B GLU 110 1_555 I CA CA . B CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc30 B OD1 ASP 141 B ASP 140 1_555 G CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc31 B OD1 ASP 143 B ASP 142 1_555 G CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc32 B OD1 ASP 145 B ASP 144 1_555 G CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc33 B O ARG 147 B ARG 146 1_555 G CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc34 B OE1 GLU 152 B GLU 151 1_555 G CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc35 B OE2 GLU 152 B GLU 151 1_555 G CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5SVE _atom_sites.fract_transf_matrix[1][1] 0.017337 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00943 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008936 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 FE A 1 401 1 FE FE . E 5 ZN A 1 402 1 ZN ZN . F 6 CA B 1 201 1 CA CA . G 6 CA B 1 202 2 CA CA . H 6 CA B 1 203 3 CA CA . I 6 CA B 1 204 4 CA CA . J 7 HOH A 1 501 54 HOH HOH . J 7 HOH A 2 502 43 HOH HOH . J 7 HOH A 3 503 27 HOH HOH . J 7 HOH A 4 504 9 HOH HOH . J 7 HOH A 5 505 53 HOH HOH . J 7 HOH A 6 506 31 HOH HOH . J 7 HOH A 7 507 2 HOH HOH . J 7 HOH A 8 508 29 HOH HOH . J 7 HOH A 9 509 36 HOH HOH . J 7 HOH A 10 510 24 HOH HOH . J 7 HOH A 11 511 52 HOH HOH . J 7 HOH A 12 512 11 HOH HOH . J 7 HOH A 13 513 49 HOH HOH . J 7 HOH A 14 514 18 HOH HOH . J 7 HOH A 15 515 23 HOH HOH . J 7 HOH A 16 516 46 HOH HOH . J 7 HOH A 17 517 1 HOH HOH . J 7 HOH A 18 518 15 HOH HOH . J 7 HOH A 19 519 10 HOH HOH . J 7 HOH A 20 520 5 HOH HOH . J 7 HOH A 21 521 28 HOH HOH . J 7 HOH A 22 522 25 HOH HOH . J 7 HOH A 23 523 12 HOH HOH . J 7 HOH A 24 524 21 HOH HOH . J 7 HOH A 25 525 26 HOH HOH . J 7 HOH A 26 526 3 HOH HOH . J 7 HOH A 27 527 7 HOH HOH . J 7 HOH A 28 528 4 HOH HOH . J 7 HOH A 29 529 16 HOH HOH . J 7 HOH A 30 530 38 HOH HOH . J 7 HOH A 31 531 6 HOH HOH . J 7 HOH A 32 532 14 HOH HOH . J 7 HOH A 33 533 20 HOH HOH . J 7 HOH A 34 534 51 HOH HOH . J 7 HOH A 35 535 48 HOH HOH . J 7 HOH A 36 536 47 HOH HOH . J 7 HOH A 37 537 32 HOH HOH . J 7 HOH A 38 538 40 HOH HOH . J 7 HOH A 39 539 35 HOH HOH . J 7 HOH A 40 540 50 HOH HOH . J 7 HOH A 41 541 19 HOH HOH . J 7 HOH A 42 542 34 HOH HOH . J 7 HOH A 43 543 30 HOH HOH . J 7 HOH A 44 544 39 HOH HOH . J 7 HOH A 45 545 22 HOH HOH . K 7 HOH B 1 301 33 HOH HOH . K 7 HOH B 2 302 44 HOH HOH . K 7 HOH B 3 303 45 HOH HOH . K 7 HOH B 4 304 37 HOH HOH . K 7 HOH B 5 305 8 HOH HOH . K 7 HOH B 6 306 13 HOH HOH . K 7 HOH B 7 307 17 HOH HOH . K 7 HOH B 8 308 41 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 6 _atom_site.Cartn_x 15.85 _atom_site.Cartn_y -31.942 _atom_site.Cartn_z 55.807 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 57.82 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #