data_5SVJ # _model_server_result.job_id 4y8VlzvBYvT9KsnGcnu5UQ _model_server_result.datetime_utc '2024-11-24 02:19:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5svj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 5SVJ # _exptl.entry_id 5SVJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5SVJ _cell.length_a 120.17 _cell.length_b 120.17 _cell.length_c 236.58 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SVJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 106 A CYS 107 1_555 A SG CYS 152 A CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 115 A CYS 116 1_555 A SG CYS 136 A CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 121 A CYS 122 1_555 A SG CYS 146 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 202 A CYS 203 1_555 A SG CYS 212 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 246 A CYS 247 1_555 A SG CYS 255 A CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 169 A ASN 170 1_555 B C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 193 A ASN 194 1_555 C C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? covale ? covale3 A ND2 ASN 289 A ASN 290 1_555 D C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 276 n n O1 HO1 PG4 sing 277 n n C1 C2 PG4 sing 278 n n C1 H11 PG4 sing 279 n n C1 H12 PG4 sing 280 n n C2 O2 PG4 sing 281 n n C2 H21 PG4 sing 282 n n C2 H22 PG4 sing 283 n n O2 C3 PG4 sing 284 n n C3 C4 PG4 sing 285 n n C3 H31 PG4 sing 286 n n C3 H32 PG4 sing 287 n n C4 O3 PG4 sing 288 n n C4 H41 PG4 sing 289 n n C4 H42 PG4 sing 290 n n O3 C5 PG4 sing 291 n n C5 C6 PG4 sing 292 n n C5 H51 PG4 sing 293 n n C5 H52 PG4 sing 294 n n C6 O4 PG4 sing 295 n n C6 H61 PG4 sing 296 n n C6 H62 PG4 sing 297 n n O4 C7 PG4 sing 298 n n C7 C8 PG4 sing 299 n n C7 H71 PG4 sing 300 n n C7 H72 PG4 sing 301 n n C8 O5 PG4 sing 302 n n C8 H81 PG4 sing 303 n n C8 H82 PG4 sing 304 n n O5 HO5 PG4 sing 305 n n # _atom_sites.entry_id 5SVJ _atom_sites.fract_transf_matrix[1][1] 0.008322 _atom_sites.fract_transf_matrix[1][2] 0.004804 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009609 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004227 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 401 500 NAG NAG . C 2 NAG A 1 402 501 NAG NAG . D 2 NAG A 1 403 502 NAG NAG . E 3 MG A 1 404 1 MG MG . F 4 NA A 1 405 1 NA NA . G 5 PG4 A 1 406 1 PG4 PG4 . H 6 EDO A 1 407 1 EDO EDO . I 7 HOH A 1 501 13 HOH HOH . I 7 HOH A 2 502 19 HOH HOH . I 7 HOH A 3 503 3 HOH HOH . I 7 HOH A 4 504 18 HOH HOH . I 7 HOH A 5 505 29 HOH HOH . I 7 HOH A 6 506 9 HOH HOH . I 7 HOH A 7 507 16 HOH HOH . I 7 HOH A 8 508 26 HOH HOH . I 7 HOH A 9 509 12 HOH HOH . I 7 HOH A 10 510 30 HOH HOH . I 7 HOH A 11 511 22 HOH HOH . I 7 HOH A 12 512 24 HOH HOH . I 7 HOH A 13 513 1 HOH HOH . I 7 HOH A 14 514 2 HOH HOH . I 7 HOH A 15 515 14 HOH HOH . I 7 HOH A 16 516 11 HOH HOH . I 7 HOH A 17 517 31 HOH HOH . I 7 HOH A 18 518 7 HOH HOH . I 7 HOH A 19 519 20 HOH HOH . I 7 HOH A 20 520 4 HOH HOH . I 7 HOH A 21 521 27 HOH HOH . I 7 HOH A 22 522 17 HOH HOH . I 7 HOH A 23 523 8 HOH HOH . I 7 HOH A 24 524 15 HOH HOH . I 7 HOH A 25 525 6 HOH HOH . I 7 HOH A 26 526 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . G 5 0.949 -10.813 -20.53 1 105.5 ? O1 PG4 406 A 1 HETATM 2 C C1 PG4 . . . G 5 0.126 -11.683 -21.257 1 108.75 ? C1 PG4 406 A 1 HETATM 3 C C2 PG4 . . . G 5 0.098 -11.258 -22.725 1 111.88 ? C2 PG4 406 A 1 HETATM 4 O O2 PG4 . . . G 5 -0.876 -10.269 -22.928 1 122.53 ? O2 PG4 406 A 1 HETATM 5 C C3 PG4 . . . G 5 -1.023 -9.891 -24.27 1 92.24 ? C3 PG4 406 A 1 HETATM 6 C C4 PG4 . . . G 5 -2.021 -8.738 -24.39 1 95.71 ? C4 PG4 406 A 1 HETATM 7 O O3 PG4 . . . G 5 -1.462 -7.706 -25.158 1 91.77 ? O3 PG4 406 A 1 HETATM 8 C C5 PG4 . . . G 5 -2.009 -7.551 -26.439 1 87.5 ? C5 PG4 406 A 1 HETATM 9 C C6 PG4 . . . G 5 -1.381 -6.336 -27.122 1 80.38 ? C6 PG4 406 A 1 HETATM 10 O O4 PG4 . . . G 5 -1.018 -6.665 -28.436 1 80.3 ? O4 PG4 406 A 1 HETATM 11 C C7 PG4 . . . G 5 -0.551 -5.588 -29.206 1 95.71 ? C7 PG4 406 A 1 HETATM 12 C C8 PG4 . . . G 5 0.922 -5.319 -28.9 1 85.78 ? C8 PG4 406 A 1 HETATM 13 O O5 PG4 . . . G 5 1.21 -3.967 -29.132 1 65.48 ? O5 PG4 406 A 1 HETATM 14 H HO1 PG4 . . . G 5 0.678 -10.772 -19.725 1 126.6 ? HO1 PG4 406 A 1 HETATM 15 H H11 PG4 . . . G 5 0.471 -12.586 -21.189 1 130.49 ? H11 PG4 406 A 1 HETATM 16 H H12 PG4 . . . G 5 -0.774 -11.653 -20.895 1 130.49 ? H12 PG4 406 A 1 HETATM 17 H H21 PG4 . . . G 5 -0.107 -12.028 -23.278 1 134.25 ? H21 PG4 406 A 1 HETATM 18 H H22 PG4 . . . G 5 0.968 -10.907 -22.974 1 134.25 ? H22 PG4 406 A 1 HETATM 19 H H31 PG4 . . . G 5 -0.164 -9.609 -24.62 1 110.69 ? H31 PG4 406 A 1 HETATM 20 H H32 PG4 . . . G 5 -1.346 -10.649 -24.783 1 110.69 ? H32 PG4 406 A 1 HETATM 21 H H41 PG4 . . . G 5 -2.832 -9.056 -24.818 1 114.86 ? H41 PG4 406 A 1 HETATM 22 H H42 PG4 . . . G 5 -2.234 -8.403 -23.505 1 114.86 ? H42 PG4 406 A 1 HETATM 23 H H51 PG4 . . . G 5 -2.967 -7.422 -26.367 1 105 ? H51 PG4 406 A 1 HETATM 24 H H52 PG4 . . . G 5 -1.829 -8.346 -26.965 1 105 ? H52 PG4 406 A 1 HETATM 25 H H61 PG4 . . . G 5 -0.593 -6.061 -26.628 1 96.46 ? H61 PG4 406 A 1 HETATM 26 H H62 PG4 . . . G 5 -2.022 -5.608 -27.137 1 96.46 ? H62 PG4 406 A 1 HETATM 27 H H71 PG4 . . . G 5 -0.651 -5.8 -30.147 1 114.86 ? H71 PG4 406 A 1 HETATM 28 H H72 PG4 . . . G 5 -1.072 -4.796 -28.998 1 114.86 ? H72 PG4 406 A 1 HETATM 29 H H81 PG4 . . . G 5 1.105 -5.534 -27.972 1 102.93 ? H81 PG4 406 A 1 HETATM 30 H H82 PG4 . . . G 5 1.477 -5.87 -29.474 1 102.93 ? H82 PG4 406 A 1 HETATM 31 H HO5 PG4 . . . G 5 0.858 -3.725 -29.867 1 78.58 ? HO5 PG4 406 A 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 41 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 415 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #