data_5SVQ
#
_model_server_result.job_id            ND5FNkPxkDRw_qIF9rHc4g 
_model_server_result.datetime_utc      '2024-11-05 21:05:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5svq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    5SVQ 
#
_exptl.entry_id    5SVQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5SVQ 
_cell.length_a            120.45 
_cell.length_b            120.45 
_cell.length_c            235.99 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5SVQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 106 A CYS 107 1_555 A SG CYS 152 A CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 115 A CYS 116 1_555 A SG CYS 136 A CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 A SG CYS 121 A CYS 122 1_555 A SG CYS 146 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 A SG CYS 202 A CYS 203 1_555 A SG CYS 212 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 A SG CYS 246 A CYS 247 1_555 A SG CYS 255 A CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
covale ? covale1 A ND2 ASN 169 A ASN 170 1_555 B C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? 
covale ? covale2 A ND2 ASN 193 A ASN 194 1_555 C C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? 
covale ? covale3 A ND2 ASN 289 A ASN 290 1_555 D C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5SVQ 
_atom_sites.fract_transf_matrix[1][1]    0.008302 
_atom_sites.fract_transf_matrix[1][2]    0.004793 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009587 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004237 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 401 500 NAG NAG . 
C 2 NAG A 1 402 501 NAG NAG . 
D 2 NAG A 1 403 502 NAG NAG . 
E 3 NA A 1 404 1 NA NA . 
F 4 MG A 1 405 1 MG MG . 
G 5 128 A 1 406 1 128 LIG . 
H 6 HOH A 1 501 1 HOH HOH . 
H 6 HOH A 2 502 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 2 10.851 0.974 -5.426 1 163.15 ? C1 NAG 403 A 1 
HETATM 2 C C2 NAG . . . D 2 12.347 1.247 -5.321 1 157.53 ? C2 NAG 403 A 1 
HETATM 3 C C3 NAG . . . D 2 13.141 0.061 -5.868 1 158.51 ? C3 NAG 403 A 1 
HETATM 4 C C4 NAG . . . D 2 12.687 -1.246 -5.226 1 166.01 ? C4 NAG 403 A 1 
HETATM 5 C C5 NAG . . . D 2 11.165 -1.388 -5.277 1 169.44 ? C5 NAG 403 A 1 
HETATM 6 C C6 NAG . . . D 2 10.647 -2.555 -4.47 1 171.46 ? C6 NAG 403 A 1 
HETATM 7 C C7 NAG . . . D 2 13.901 3.054 -5.909 1 171.77 ? C7 NAG 403 A 1 
HETATM 8 C C8 NAG . . . D 2 14.099 4.304 -6.711 1 159.88 ? C8 NAG 403 A 1 
HETATM 9 N N2 NAG . . . D 2 12.705 2.468 -6.025 1 165.37 ? N2 NAG 403 A 1 
HETATM 10 O O3 NAG . . . D 2 14.53 0.263 -5.634 1 161.91 ? O3 NAG 403 A 1 
HETATM 11 O O4 NAG . . . D 2 13.288 -2.346 -5.899 1 169.44 ? O4 NAG 403 A 1 
HETATM 12 O O5 NAG . . . D 2 10.54 -0.214 -4.741 1 156.33 ? O5 NAG 403 A 1 
HETATM 13 O O6 NAG . . . D 2 9.322 -2.315 -4.015 1 153.42 ? O6 NAG 403 A 1 
HETATM 14 O O7 NAG . . . D 2 14.784 2.596 -5.188 1 174.01 ? O7 NAG 403 A 1 
HETATM 15 H H1 NAG . . . D 2 10.607 0.877 -6.366 1 195.79 ? H1 NAG 403 A 1 
HETATM 16 H H2 NAG . . . D 2 12.574 1.354 -4.378 1 189.04 ? H2 NAG 403 A 1 
HETATM 17 H H3 NAG . . . D 2 12.991 0.003 -6.831 1 190.21 ? H3 NAG 403 A 1 
HETATM 18 H H4 NAG . . . D 2 12.972 -1.254 -4.292 1 199.22 ? H4 NAG 403 A 1 
HETATM 19 H H5 NAG . . . D 2 10.889 -1.498 -6.207 1 203.33 ? H5 NAG 403 A 1 
HETATM 20 H H61 NAG . . . D 2 11.229 -2.695 -3.7 1 205.75 ? H61 NAG 403 A 1 
HETATM 21 H H62 NAG . . . D 2 10.653 -3.357 -5.026 1 205.75 ? H62 NAG 403 A 1 
HETATM 22 H H81 NAG . . . D 2 14.999 4.651 -6.557 1 191.85 ? H81 NAG 403 A 1 
HETATM 23 H H82 NAG . . . D 2 13.442 4.972 -6.44 1 191.85 ? H82 NAG 403 A 1 
HETATM 24 H H83 NAG . . . D 2 13.987 4.103 -7.66 1 191.85 ? H83 NAG 403 A 1 
HETATM 25 H HN2 NAG . . . D 2 12.086 2.849 -6.576 1 198.45 ? HN2 NAG 403 A 1 
HETATM 26 H HO3 NAG . . . D 2 14.942 -0.522 -5.598 1 194.29 ? HO3 NAG 403 A 1 
HETATM 27 H HO4 NAG . . . D 2 13.966 -2.057 -6.394 1 203.33 ? HO4 NAG 403 A 1 
HETATM 28 H HO6 NAG . . . D 2 9.026 -1.549 -4.354 1 184.1 ? HO6 NAG 403 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           349 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           28 
#