data_5SVS # _model_server_result.job_id X6EaNQReOVuMaJ7RxkbUjA _model_server_result.datetime_utc '2024-11-04 22:32:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5svs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 5SVS # _exptl.entry_id 5SVS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5SVS _cell.length_a 120.2 _cell.length_b 120.2 _cell.length_c 236.24 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SVS _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 106 A CYS 107 1_555 A SG CYS 152 A CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 115 A CYS 116 1_555 A SG CYS 136 A CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 121 A CYS 122 1_555 A SG CYS 146 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 202 A CYS 203 1_555 A SG CYS 212 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 246 A CYS 247 1_555 A SG CYS 255 A CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 169 A ASN 170 1_555 B C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 A ND2 ASN 193 A ASN 194 1_555 C C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale3 A ND2 ASN 289 A ASN 290 1_555 D C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 276 n n O1 HO1 PG4 sing 277 n n C1 C2 PG4 sing 278 n n C1 H11 PG4 sing 279 n n C1 H12 PG4 sing 280 n n C2 O2 PG4 sing 281 n n C2 H21 PG4 sing 282 n n C2 H22 PG4 sing 283 n n O2 C3 PG4 sing 284 n n C3 C4 PG4 sing 285 n n C3 H31 PG4 sing 286 n n C3 H32 PG4 sing 287 n n C4 O3 PG4 sing 288 n n C4 H41 PG4 sing 289 n n C4 H42 PG4 sing 290 n n O3 C5 PG4 sing 291 n n C5 C6 PG4 sing 292 n n C5 H51 PG4 sing 293 n n C5 H52 PG4 sing 294 n n C6 O4 PG4 sing 295 n n C6 H61 PG4 sing 296 n n C6 H62 PG4 sing 297 n n O4 C7 PG4 sing 298 n n C7 C8 PG4 sing 299 n n C7 H71 PG4 sing 300 n n C7 H72 PG4 sing 301 n n C8 O5 PG4 sing 302 n n C8 H81 PG4 sing 303 n n C8 H82 PG4 sing 304 n n O5 HO5 PG4 sing 305 n n # _atom_sites.entry_id 5SVS _atom_sites.fract_transf_matrix[1][1] 0.008319 _atom_sites.fract_transf_matrix[1][2] 0.004803 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009606 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004233 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 401 500 NAG NAG . C 2 NAG A 1 402 501 NAG NAG . D 2 NAG A 1 403 502 NAG NAG . E 3 MG A 1 404 1 MG MG . F 4 NA A 1 405 1 NA NA . G 5 PG4 A 1 406 1 PG4 PG4 . H 6 EDO A 1 407 1 EDO EDO . I 7 HOH A 1 501 12 HOH HOH . I 7 HOH A 2 502 3 HOH HOH . I 7 HOH A 3 503 19 HOH HOH . I 7 HOH A 4 504 29 HOH HOH . I 7 HOH A 5 505 9 HOH HOH . I 7 HOH A 6 506 13 HOH HOH . I 7 HOH A 7 507 18 HOH HOH . I 7 HOH A 8 508 26 HOH HOH . I 7 HOH A 9 509 16 HOH HOH . I 7 HOH A 10 510 11 HOH HOH . I 7 HOH A 11 511 1 HOH HOH . I 7 HOH A 12 512 24 HOH HOH . I 7 HOH A 13 513 22 HOH HOH . I 7 HOH A 14 514 30 HOH HOH . I 7 HOH A 15 515 7 HOH HOH . I 7 HOH A 16 516 2 HOH HOH . I 7 HOH A 17 517 31 HOH HOH . I 7 HOH A 18 518 27 HOH HOH . I 7 HOH A 19 519 4 HOH HOH . I 7 HOH A 20 520 14 HOH HOH . I 7 HOH A 21 521 20 HOH HOH . I 7 HOH A 22 522 8 HOH HOH . I 7 HOH A 23 523 15 HOH HOH . I 7 HOH A 24 524 17 HOH HOH . I 7 HOH A 25 525 6 HOH HOH . I 7 HOH A 26 526 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . G 5 0.664 -10.666 -20.495 1 198.58 ? O1 PG4 406 A 1 HETATM 2 C C1 PG4 . . . G 5 -0.065 -11.607 -21.234 1 200.57 ? C1 PG4 406 A 1 HETATM 3 C C2 PG4 . . . G 5 -0.087 -11.201 -22.709 1 214.74 ? C2 PG4 406 A 1 HETATM 4 O O2 PG4 . . . G 5 -1.085 -10.243 -22.942 1 201.83 ? O2 PG4 406 A 1 HETATM 5 C C3 PG4 . . . G 5 -1.137 -9.793 -24.27 1 197 ? C3 PG4 406 A 1 HETATM 6 C C4 PG4 . . . G 5 -2.13 -8.638 -24.405 1 195.44 ? C4 PG4 406 A 1 HETATM 7 O O3 PG4 . . . G 5 -1.552 -7.6 -25.148 1 189.19 ? O3 PG4 406 A 1 HETATM 8 C C5 PG4 . . . G 5 -2.102 -7.415 -26.425 1 168.56 ? C5 PG4 406 A 1 HETATM 9 C C6 PG4 . . . G 5 -1.482 -6.179 -27.079 1 185.05 ? C6 PG4 406 A 1 HETATM 10 O O4 PG4 . . . G 5 -1.133 -6.475 -28.404 1 189.9 ? O4 PG4 406 A 1 HETATM 11 C C7 PG4 . . . G 5 -0.616 -5.396 -29.139 1 169.34 ? C7 PG4 406 A 1 HETATM 12 C C8 PG4 . . . G 5 0.856 -5.188 -28.802 1 161.19 ? C8 PG4 406 A 1 HETATM 13 O O5 PG4 . . . G 5 1.205 -3.836 -28.946 1 148.17 ? O5 PG4 406 A 1 HETATM 14 H HO1 PG4 . . . G 5 0.56 -10.816 -19.664 1 238.29 ? HO1 PG4 406 A 1 HETATM 15 H H11 PG4 . . . G 5 0.35 -12.479 -21.145 1 240.68 ? H11 PG4 406 A 1 HETATM 16 H H12 PG4 . . . G 5 -0.974 -11.648 -20.897 1 240.68 ? H12 PG4 406 A 1 HETATM 17 H H21 PG4 . . . G 5 -0.263 -11.985 -23.254 1 257.69 ? H21 PG4 406 A 1 HETATM 18 H H22 PG4 . . . G 5 0.775 -10.831 -22.952 1 257.69 ? H22 PG4 406 A 1 HETATM 19 H H31 PG4 . . . G 5 -0.256 -9.49 -24.54 1 236.4 ? H31 PG4 406 A 1 HETATM 20 H H32 PG4 . . . G 5 -1.416 -10.523 -24.845 1 236.4 ? H32 PG4 406 A 1 HETATM 21 H H41 PG4 . . . G 5 -2.93 -8.952 -24.856 1 234.53 ? H41 PG4 406 A 1 HETATM 22 H H42 PG4 . . . G 5 -2.366 -8.31 -23.523 1 234.53 ? H42 PG4 406 A 1 HETATM 23 H H51 PG4 . . . G 5 -3.061 -7.293 -26.349 1 202.27 ? H51 PG4 406 A 1 HETATM 24 H H52 PG4 . . . G 5 -1.918 -8.195 -26.972 1 202.27 ? H52 PG4 406 A 1 HETATM 25 H H61 PG4 . . . G 5 -0.689 -5.917 -26.586 1 222.06 ? H61 PG4 406 A 1 HETATM 26 H H62 PG4 . . . G 5 -2.124 -5.452 -27.068 1 222.06 ? H62 PG4 406 A 1 HETATM 27 H H71 PG4 . . . G 5 -0.705 -5.581 -30.087 1 203.21 ? H71 PG4 406 A 1 HETATM 28 H H72 PG4 . . . G 5 -1.112 -4.592 -28.921 1 203.21 ? H72 PG4 406 A 1 HETATM 29 H H81 PG4 . . . G 5 1.017 -5.465 -27.886 1 193.43 ? H81 PG4 406 A 1 HETATM 30 H H82 PG4 . . . G 5 1.4 -5.725 -29.399 1 193.43 ? H82 PG4 406 A 1 HETATM 31 H HO5 PG4 . . . G 5 0.932 -3.552 -29.699 1 177.8 ? HO5 PG4 406 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #