data_5SW3 # _model_server_result.job_id epZ1tS3NOzR_VJh45d25xg _model_server_result.datetime_utc '2024-11-08 03:19:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sw3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 5SW3 # _exptl.entry_id 5SW3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 166.177 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-(dimethylamino)pyridine-3-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.82 _cell.angle_gamma 90 _cell.entry_id 5SW3 _cell.length_a 89.027 _cell.length_b 64.071 _cell.length_c 70.453 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SW3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -6.932352 0 140.735366 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 309 A CYS 318 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc2 A SG CYS 311 A CYS 320 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc3 A SG CYS 314 A CYS 323 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc4 A ND1 HIS 340 A HIS 349 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? # _chem_comp.formula 'C8 H10 N2 O2' _chem_comp.formula_weight 166.177 _chem_comp.id 46L _chem_comp.mon_nstd_flag . _chem_comp.name '6-(dimethylamino)pyridine-3-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N 46L sing 1 n n C N 46L sing 2 n n N C2 46L sing 3 n n C2 N1 46L doub 4 n y C2 C3 46L sing 5 n y N1 C7 46L sing 6 n y C3 C4 46L doub 7 n y C7 C5 46L doub 8 n y C4 C5 46L sing 9 n y C5 C6 46L sing 10 n n C6 O1 46L doub 11 n n C6 O 46L sing 12 n n C4 H1 46L sing 13 n n C7 H2 46L sing 14 n n O H3 46L sing 15 n n C3 H4 46L sing 16 n n C1 H5 46L sing 17 n n C1 H6 46L sing 18 n n C1 H7 46L sing 19 n n C H8 46L sing 20 n n C H9 46L sing 21 n n C H10 46L sing 22 n n # _atom_sites.entry_id 5SW3 _atom_sites.fract_transf_matrix[1][1] 0.011233 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000553 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015608 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014211 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 3 DMS A 1 402 8 DMS DMS . D 3 DMS A 1 403 11 DMS DMS . E 3 DMS A 1 404 12 DMS DMS . F 4 46L A 1 405 3 46L XXX . G 4 46L A 1 406 4 46L XXX . H 5 PEG A 1 407 1 PEG PEG . I 6 PG4 A 1 408 1 PG4 PG4 . J 7 HOH A 1 501 228 HOH HOH . J 7 HOH A 2 502 174 HOH HOH . J 7 HOH A 3 503 288 HOH HOH . J 7 HOH A 4 504 111 HOH HOH . J 7 HOH A 5 505 251 HOH HOH . J 7 HOH A 6 506 136 HOH HOH . J 7 HOH A 7 507 229 HOH HOH . J 7 HOH A 8 508 123 HOH HOH . J 7 HOH A 9 509 115 HOH HOH . J 7 HOH A 10 510 48 HOH HOH . J 7 HOH A 11 511 147 HOH HOH . J 7 HOH A 12 512 185 HOH HOH . J 7 HOH A 13 513 248 HOH HOH . J 7 HOH A 14 514 55 HOH HOH . J 7 HOH A 15 515 37 HOH HOH . J 7 HOH A 16 516 143 HOH HOH . J 7 HOH A 17 517 113 HOH HOH . J 7 HOH A 18 518 167 HOH HOH . J 7 HOH A 19 519 172 HOH HOH . J 7 HOH A 20 520 69 HOH HOH . J 7 HOH A 21 521 226 HOH HOH . J 7 HOH A 22 522 87 HOH HOH . J 7 HOH A 23 523 106 HOH HOH . J 7 HOH A 24 524 38 HOH HOH . J 7 HOH A 25 525 124 HOH HOH . J 7 HOH A 26 526 116 HOH HOH . J 7 HOH A 27 527 35 HOH HOH . J 7 HOH A 28 528 2 HOH HOH . J 7 HOH A 29 529 129 HOH HOH . J 7 HOH A 30 530 103 HOH HOH . J 7 HOH A 31 531 72 HOH HOH . J 7 HOH A 32 532 112 HOH HOH . J 7 HOH A 33 533 73 HOH HOH . J 7 HOH A 34 534 29 HOH HOH . J 7 HOH A 35 535 233 HOH HOH . J 7 HOH A 36 536 67 HOH HOH . J 7 HOH A 37 537 53 HOH HOH . J 7 HOH A 38 538 70 HOH HOH . J 7 HOH A 39 539 76 HOH HOH . J 7 HOH A 40 540 276 HOH HOH . J 7 HOH A 41 541 36 HOH HOH . J 7 HOH A 42 542 201 HOH HOH . J 7 HOH A 43 543 12 HOH HOH . J 7 HOH A 44 544 148 HOH HOH . J 7 HOH A 45 545 11 HOH HOH . J 7 HOH A 46 546 66 HOH HOH . J 7 HOH A 47 547 54 HOH HOH . J 7 HOH A 48 548 152 HOH HOH . J 7 HOH A 49 549 108 HOH HOH . J 7 HOH A 50 550 3 HOH HOH . J 7 HOH A 51 551 183 HOH HOH . J 7 HOH A 52 552 290 HOH HOH . J 7 HOH A 53 553 21 HOH HOH . J 7 HOH A 54 554 51 HOH HOH . J 7 HOH A 55 555 110 HOH HOH . J 7 HOH A 56 556 13 HOH HOH . J 7 HOH A 57 557 30 HOH HOH . J 7 HOH A 58 558 44 HOH HOH . J 7 HOH A 59 559 249 HOH HOH . J 7 HOH A 60 560 83 HOH HOH . J 7 HOH A 61 561 34 HOH HOH . J 7 HOH A 62 562 105 HOH HOH . J 7 HOH A 63 563 117 HOH HOH . J 7 HOH A 64 564 18 HOH HOH . J 7 HOH A 65 565 42 HOH HOH . J 7 HOH A 66 566 6 HOH HOH . J 7 HOH A 67 567 17 HOH HOH . J 7 HOH A 68 568 50 HOH HOH . J 7 HOH A 69 569 81 HOH HOH . J 7 HOH A 70 570 60 HOH HOH . J 7 HOH A 71 571 95 HOH HOH . J 7 HOH A 72 572 65 HOH HOH . J 7 HOH A 73 573 164 HOH HOH . J 7 HOH A 74 574 182 HOH HOH . J 7 HOH A 75 575 220 HOH HOH . J 7 HOH A 76 576 9 HOH HOH . J 7 HOH A 77 577 101 HOH HOH . J 7 HOH A 78 578 127 HOH HOH . J 7 HOH A 79 579 109 HOH HOH . J 7 HOH A 80 580 165 HOH HOH . J 7 HOH A 81 581 5 HOH HOH . J 7 HOH A 82 582 191 HOH HOH . J 7 HOH A 83 583 173 HOH HOH . J 7 HOH A 84 584 96 HOH HOH . J 7 HOH A 85 585 1 HOH HOH . J 7 HOH A 86 586 245 HOH HOH . J 7 HOH A 87 587 149 HOH HOH . J 7 HOH A 88 588 102 HOH HOH . J 7 HOH A 89 589 40 HOH HOH . J 7 HOH A 90 590 198 HOH HOH . J 7 HOH A 91 591 27 HOH HOH . J 7 HOH A 92 592 62 HOH HOH . J 7 HOH A 93 593 4 HOH HOH . J 7 HOH A 94 594 189 HOH HOH . J 7 HOH A 95 595 92 HOH HOH . J 7 HOH A 96 596 285 HOH HOH . J 7 HOH A 97 597 33 HOH HOH . J 7 HOH A 98 598 88 HOH HOH . J 7 HOH A 99 599 218 HOH HOH . J 7 HOH A 100 600 264 HOH HOH . J 7 HOH A 101 601 94 HOH HOH . J 7 HOH A 102 602 45 HOH HOH . J 7 HOH A 103 603 52 HOH HOH . J 7 HOH A 104 604 39 HOH HOH . J 7 HOH A 105 605 142 HOH HOH . J 7 HOH A 106 606 206 HOH HOH . J 7 HOH A 107 607 286 HOH HOH . J 7 HOH A 108 608 187 HOH HOH . J 7 HOH A 109 609 41 HOH HOH . J 7 HOH A 110 610 49 HOH HOH . J 7 HOH A 111 611 131 HOH HOH . J 7 HOH A 112 612 287 HOH HOH . J 7 HOH A 113 613 153 HOH HOH . J 7 HOH A 114 614 231 HOH HOH . J 7 HOH A 115 615 64 HOH HOH . J 7 HOH A 116 616 25 HOH HOH . J 7 HOH A 117 617 199 HOH HOH . J 7 HOH A 118 618 28 HOH HOH . J 7 HOH A 119 619 7 HOH HOH . J 7 HOH A 120 620 99 HOH HOH . J 7 HOH A 121 621 219 HOH HOH . J 7 HOH A 122 622 205 HOH HOH . J 7 HOH A 123 623 78 HOH HOH . J 7 HOH A 124 624 119 HOH HOH . J 7 HOH A 125 625 59 HOH HOH . J 7 HOH A 126 626 56 HOH HOH . J 7 HOH A 127 627 195 HOH HOH . J 7 HOH A 128 628 210 HOH HOH . J 7 HOH A 129 629 15 HOH HOH . J 7 HOH A 130 630 79 HOH HOH . J 7 HOH A 131 631 204 HOH HOH . J 7 HOH A 132 632 207 HOH HOH . J 7 HOH A 133 633 139 HOH HOH . J 7 HOH A 134 634 223 HOH HOH . J 7 HOH A 135 635 186 HOH HOH . J 7 HOH A 136 636 146 HOH HOH . J 7 HOH A 137 637 178 HOH HOH . J 7 HOH A 138 638 24 HOH HOH . J 7 HOH A 139 639 184 HOH HOH . J 7 HOH A 140 640 104 HOH HOH . J 7 HOH A 141 641 180 HOH HOH . J 7 HOH A 142 642 68 HOH HOH . J 7 HOH A 143 643 155 HOH HOH . J 7 HOH A 144 644 58 HOH HOH . J 7 HOH A 145 645 227 HOH HOH . J 7 HOH A 146 646 75 HOH HOH . J 7 HOH A 147 647 194 HOH HOH . J 7 HOH A 148 648 224 HOH HOH . J 7 HOH A 149 649 190 HOH HOH . J 7 HOH A 150 650 121 HOH HOH . J 7 HOH A 151 651 8 HOH HOH . J 7 HOH A 152 652 211 HOH HOH . J 7 HOH A 153 653 71 HOH HOH . J 7 HOH A 154 654 213 HOH HOH . J 7 HOH A 155 655 215 HOH HOH . J 7 HOH A 156 656 80 HOH HOH . J 7 HOH A 157 657 150 HOH HOH . J 7 HOH A 158 658 61 HOH HOH . J 7 HOH A 159 659 100 HOH HOH . J 7 HOH A 160 660 120 HOH HOH . J 7 HOH A 161 661 166 HOH HOH . J 7 HOH A 162 662 93 HOH HOH . J 7 HOH A 163 663 171 HOH HOH . J 7 HOH A 164 664 202 HOH HOH . J 7 HOH A 165 665 90 HOH HOH . J 7 HOH A 166 666 63 HOH HOH . J 7 HOH A 167 667 133 HOH HOH . J 7 HOH A 168 668 125 HOH HOH . J 7 HOH A 169 669 203 HOH HOH . J 7 HOH A 170 670 10 HOH HOH . J 7 HOH A 171 671 97 HOH HOH . J 7 HOH A 172 672 161 HOH HOH . J 7 HOH A 173 673 107 HOH HOH . J 7 HOH A 174 674 31 HOH HOH . J 7 HOH A 175 675 262 HOH HOH . J 7 HOH A 176 676 217 HOH HOH . J 7 HOH A 177 677 240 HOH HOH . J 7 HOH A 178 678 273 HOH HOH . J 7 HOH A 179 679 134 HOH HOH . J 7 HOH A 180 680 261 HOH HOH . J 7 HOH A 181 681 86 HOH HOH . J 7 HOH A 182 682 263 HOH HOH . J 7 HOH A 183 683 256 HOH HOH . J 7 HOH A 184 684 32 HOH HOH . J 7 HOH A 185 685 130 HOH HOH . J 7 HOH A 186 686 209 HOH HOH . J 7 HOH A 187 687 260 HOH HOH . J 7 HOH A 188 688 74 HOH HOH . J 7 HOH A 189 689 279 HOH HOH . J 7 HOH A 190 690 208 HOH HOH . J 7 HOH A 191 691 132 HOH HOH . J 7 HOH A 192 692 292 HOH HOH . J 7 HOH A 193 693 177 HOH HOH . J 7 HOH A 194 694 247 HOH HOH . J 7 HOH A 195 695 85 HOH HOH . J 7 HOH A 196 696 239 HOH HOH . J 7 HOH A 197 697 243 HOH HOH . J 7 HOH A 198 698 222 HOH HOH . J 7 HOH A 199 699 241 HOH HOH . J 7 HOH A 200 700 255 HOH HOH . J 7 HOH A 201 701 16 HOH HOH . J 7 HOH A 202 702 291 HOH HOH . J 7 HOH A 203 703 82 HOH HOH . J 7 HOH A 204 704 272 HOH HOH . J 7 HOH A 205 705 225 HOH HOH . J 7 HOH A 206 706 254 HOH HOH . J 7 HOH A 207 707 284 HOH HOH . J 7 HOH A 208 708 278 HOH HOH . J 7 HOH A 209 709 289 HOH HOH . J 7 HOH A 210 710 238 HOH HOH . J 7 HOH A 211 711 175 HOH HOH . J 7 HOH A 212 712 126 HOH HOH . J 7 HOH A 213 713 43 HOH HOH . J 7 HOH A 214 714 250 HOH HOH . J 7 HOH A 215 715 46 HOH HOH . J 7 HOH A 216 716 266 HOH HOH . J 7 HOH A 217 717 293 HOH HOH . J 7 HOH A 218 718 253 HOH HOH . J 7 HOH A 219 719 181 HOH HOH . J 7 HOH A 220 720 232 HOH HOH . J 7 HOH A 221 721 84 HOH HOH . J 7 HOH A 222 722 257 HOH HOH . J 7 HOH A 223 723 274 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 46L . . . G 4 -3.766 26.206 100.548 1 41.54 ? C4 46L 406 A 1 HETATM 2 C C5 46L . . . G 4 -4.505 26.412 99.393 1 41.57 ? C5 46L 406 A 1 HETATM 3 C C6 46L . . . G 4 -4.56 27.767 98.729 1 41.9 ? C6 46L 406 A 1 HETATM 4 N N1 46L . . . G 4 -5.279 24.138 99.487 1 41.35 ? N1 46L 406 A 1 HETATM 5 C C7 46L . . . G 4 -5.229 25.339 98.892 1 41.45 ? C7 46L 406 A 1 HETATM 6 O O1 46L . . . G 4 -5.246 27.88 97.685 1 42.29 ? O1 46L 406 A 1 HETATM 7 O O 46L . . . G 4 -3.957 28.714 99.288 1 41.69 -1 O 46L 406 A 1 HETATM 8 C C3 46L . . . G 4 -3.794 24.98 101.184 1 41.48 ? C3 46L 406 A 1 HETATM 9 C C2 46L . . . G 4 -4.585 23.981 100.622 1 41.48 ? C2 46L 406 A 1 HETATM 10 N N 46L . . . G 4 -4.758 22.765 101.247 1 41.68 ? N 46L 406 A 1 HETATM 11 C C1 46L . . . G 4 -4.265 22.554 102.595 1 42 ? C1 46L 406 A 1 HETATM 12 C C 46L . . . G 4 -5.734 21.812 100.751 1 41.8 ? C 46L 406 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #