data_5SW8 # _model_server_result.job_id DtDKmdB3HEmSsRqzpr3b0g _model_server_result.datetime_utc '2024-11-26 01:55:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sw8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1101}' # _entry.id 5SW8 # _exptl.entry_id 5SW8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SW8 _cell.length_a 115.648 _cell.length_b 117.819 _cell.length_c 152.512 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SW8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MET 817 A MET 789 1_555 A N SEP 818 A SEP 790 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C SEP 818 A SEP 790 1_555 A N GLU 819 A GLU 791 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 101 n n N1 C6 EPE sing 102 n n N1 C9 EPE sing 103 n n C2 C3 EPE sing 104 n n C2 H21 EPE sing 105 n n C2 H22 EPE sing 106 n n C3 N4 EPE sing 107 n n C3 H31 EPE sing 108 n n C3 H32 EPE sing 109 n n N4 C5 EPE sing 110 n n N4 C7 EPE sing 111 n n C5 C6 EPE sing 112 n n C5 H51 EPE sing 113 n n C5 H52 EPE sing 114 n n C6 H61 EPE sing 115 n n C6 H62 EPE sing 116 n n C7 C8 EPE sing 117 n n C7 H71 EPE sing 118 n n C7 H72 EPE sing 119 n n C8 O8 EPE sing 120 n n C8 H81 EPE sing 121 n n C8 H82 EPE sing 122 n n O8 HO8 EPE sing 123 n n C9 C10 EPE sing 124 n n C9 H91 EPE sing 125 n n C9 H92 EPE sing 126 n n C10 S EPE sing 127 n n C10 H101 EPE sing 128 n n C10 H102 EPE sing 129 n n S O1S EPE doub 130 n n S O2S EPE doub 131 n n S O3S EPE sing 132 n n O3S HOS3 EPE sing 133 n n # _atom_sites.entry_id 5SW8 _atom_sites.fract_transf_matrix[1][1] 0.008647 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006557 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EPE A 1 1101 1 EPE EPE . D 4 70S A 1 1102 1 70S 1A9 . E 5 FB1 A 1 1103 1 FB1 1D9 . F 5 FB1 A 1 1104 2 FB1 1D9 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . C 3 84.633 66.338 52.929 1 172.75 ? N1 EPE 1101 A 1 HETATM 2 C C2 EPE . . . C 3 85.032 67.443 53.821 1 178.47 ? C2 EPE 1101 A 1 HETATM 3 C C3 EPE . . . C 3 85.051 66.976 55.27 1 183.61 ? C3 EPE 1101 A 1 HETATM 4 N N4 EPE . . . C 3 83.695 66.549 55.661 1 173.2 ? N4 EPE 1101 A 1 HETATM 5 C C5 EPE . . . C 3 83.328 65.385 54.828 1 168.35 ? C5 EPE 1101 A 1 HETATM 6 C C6 EPE . . . C 3 83.34 65.745 53.341 1 165.46 ? C6 EPE 1101 A 1 HETATM 7 C C7 EPE . . . C 3 83.644 66.203 57.101 1 159.61 ? C7 EPE 1101 A 1 HETATM 8 C C8 EPE . . . C 3 83.756 67.415 58.038 1 151.88 ? C8 EPE 1101 A 1 HETATM 9 O O8 EPE . . . C 3 83.445 68.668 57.402 1 137.6 ? O8 EPE 1101 A 1 HETATM 10 C C9 EPE . . . C 3 84.554 66.913 51.579 1 183.11 ? C9 EPE 1101 A 1 HETATM 11 C C10 EPE . . . C 3 84.373 65.837 50.517 1 203.28 ? C10 EPE 1101 A 1 HETATM 12 S S EPE . . . C 3 84.769 66.464 49.028 1 219.33 ? S EPE 1101 A 1 HETATM 13 O O1S EPE . . . C 3 84.102 67.776 48.844 1 220.91 ? O1S EPE 1101 A 1 HETATM 14 O O2S EPE . . . C 3 84.327 65.53 47.967 1 224.62 ? O2S EPE 1101 A 1 HETATM 15 O O3S EPE . . . C 3 86.236 66.64 48.958 1 218.62 ? O3S EPE 1101 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #