data_5SWO # _model_server_result.job_id 1yGeZzlLiZo2w3heZDn-cA _model_server_result.datetime_utc '2025-02-18 09:32:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5swo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1102}' # _entry.id 5SWO # _exptl.entry_id 5SWO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 176.172 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-methyl-5-nitro-1H-indole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SWO _cell.length_a 114.826 _cell.length_b 116.36 _cell.length_c 149.442 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SWO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MET 817 A MET 789 1_555 A N SEP 818 A SEP 790 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C SEP 818 A SEP 790 1_555 A N GLU 819 A GLU 791 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C9 H8 N2 O2' _chem_comp.formula_weight 176.172 _chem_comp.id 70T _chem_comp.mon_nstd_flag . _chem_comp.name 2-methyl-5-nitro-1H-indole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 70T doub 19 n y C7 C4 70T sing 20 n y C8 C9 70T sing 21 n y C4 N3 70T sing 22 n y C4 C5 70T doub 23 n y N3 C2 70T sing 24 n y C9 N11 70T sing 25 n n C9 C10 70T doub 26 n y O13 N11 70T doub 27 n n N11 O12 70T sing 28 n n C5 C10 70T sing 29 n y C5 C6 70T sing 30 n y C2 C1 70T sing 31 n n C2 C6 70T doub 32 n y C6 H1 70T sing 33 n n C7 H2 70T sing 34 n n C8 H3 70T sing 35 n n C10 H4 70T sing 36 n n C1 H5 70T sing 37 n n C1 H6 70T sing 38 n n C1 H7 70T sing 39 n n N3 H8 70T sing 40 n n # _atom_sites.entry_id 5SWO _atom_sites.fract_transf_matrix[1][1] 0.008709 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008594 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006692 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL A 1 1101 1 CL CL . D 4 70T A 1 1102 1 70T H12 . E 5 2ZV B 1 701 1 2ZV DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 70T . . . D 4 62.269 68.079 97.698 1 140.26 ? C6 70T 1102 A 1 HETATM 2 C C5 70T . . . D 4 61.544 68.952 96.821 1 143.13 ? C5 70T 1102 A 1 HETATM 3 C C4 70T . . . D 4 62.008 68.702 95.443 1 141.47 ? C4 70T 1102 A 1 HETATM 4 C C2 70T . . . D 4 63.118 67.352 96.87 1 127.67 ? C2 70T 1102 A 1 HETATM 5 C C7 70T . . . D 4 61.436 69.441 94.393 1 132.49 ? C7 70T 1102 A 1 HETATM 6 C C8 70T . . . D 4 60.444 70.4 94.656 1 138.72 ? C8 70T 1102 A 1 HETATM 7 C C9 70T . . . D 4 59.996 70.65 95.975 1 144.23 ? C9 70T 1102 A 1 HETATM 8 C C10 70T . . . D 4 60.549 69.919 97.051 1 144.34 ? C10 70T 1102 A 1 HETATM 9 C C1 70T . . . D 4 64.005 66.332 97.542 1 109.39 ? C1 70T 1102 A 1 HETATM 10 N N3 70T . . . D 4 62.96 67.724 95.567 1 143.44 ? N3 70T 1102 A 1 HETATM 11 N N11 70T . . . D 4 58.987 71.625 96.23 1 132.83 ? N11 70T 1102 A 1 HETATM 12 O O12 70T . . . D 4 57.746 71.23 96.773 1 111.7 ? O12 70T 1102 A 1 HETATM 13 O O13 70T . . . D 4 59.171 72.816 95.983 1 117.98 ? O13 70T 1102 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 13 #