data_5SWO # _model_server_result.job_id rAdCVkrkf2OrMahVKeBWAA _model_server_result.datetime_utc '2024-11-26 02:06:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5swo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":701}' # _entry.id 5SWO # _exptl.entry_id 5SWO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 153.139 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-methyl-3-nitropyridin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SWO _cell.length_a 114.826 _cell.length_b 116.36 _cell.length_c 149.442 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SWO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MET 817 A MET 789 1_555 A N SEP 818 A SEP 790 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C SEP 818 A SEP 790 1_555 A N GLU 819 A GLU 791 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C6 H7 N3 O2' _chem_comp.formula_weight 153.139 _chem_comp.id 2ZV _chem_comp.mon_nstd_flag . _chem_comp.name 4-methyl-3-nitropyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C3 2ZV doub 1 n y C4 N5 2ZV sing 2 n y C3 C2 2ZV sing 3 n y N5 C6 2ZV doub 4 n y C2 C1 2ZV sing 5 n n C2 C8 2ZV doub 6 n y C6 C8 2ZV sing 7 n y C6 N7 2ZV sing 8 n n C8 N9 2ZV sing 9 n n N9 O10 2ZV sing 10 n n N9 O11 2ZV doub 11 n n C1 H1 2ZV sing 12 n n C1 H2 2ZV sing 13 n n C1 H3 2ZV sing 14 n n C3 H4 2ZV sing 15 n n C4 H5 2ZV sing 16 n n N7 H6 2ZV sing 17 n n N7 H7 2ZV sing 18 n n # _atom_sites.entry_id 5SWO _atom_sites.fract_transf_matrix[1][1] 0.008709 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008594 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006692 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL A 1 1101 1 CL CL . D 4 70T A 1 1102 1 70T H12 . E 5 2ZV B 1 701 1 2ZV DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 2ZV . . . E 5 55.988 45.609 76.538 1 194.14 ? C1 2ZV 701 B 1 HETATM 2 C C2 2ZV . . . E 5 56.755 44.489 76.156 1 201.84 ? C2 2ZV 701 B 1 HETATM 3 C C3 2ZV . . . E 5 56.454 43.228 76.696 1 200.79 ? C3 2ZV 701 B 1 HETATM 4 C C4 2ZV . . . E 5 57.211 42.103 76.331 1 193.1 ? C4 2ZV 701 B 1 HETATM 5 N N5 2ZV . . . E 5 58.284 42.217 75.415 1 177.73 ? N5 2ZV 701 B 1 HETATM 6 C C6 2ZV . . . E 5 58.579 43.422 74.892 1 178.85 ? C6 2ZV 701 B 1 HETATM 7 N N7 2ZV . . . E 5 59.574 43.585 74.021 1 171.6 ? N7 2ZV 701 B 1 HETATM 8 C C8 2ZV . . . E 5 57.838 44.56 75.248 1 189.45 ? C8 2ZV 701 B 1 HETATM 9 N N9 2ZV . . . E 5 58.195 45.724 74.688 1 179 ? N9 2ZV 701 B 1 HETATM 10 O O10 2ZV . . . E 5 58.221 45.792 73.185 1 160.58 ? O10 2ZV 701 B 1 HETATM 11 O O11 2ZV . . . E 5 58.649 46.916 75.616 1 153.05 ? O11 2ZV 701 B 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 11 #