data_5SX4
#
_model_server_result.job_id            xPXpKhJj36acNeoieE_v6g 
_model_server_result.datetime_utc      '2024-10-17 15:33:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5sx4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":304}' 
#
_entry.id    5SX4 
#
_exptl.entry_id    5SX4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5SX4 
_cell.length_a            65.273 
_cell.length_b            113.184 
_cell.length_c            232.443 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5SX4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,G,H,I,J,K,S,T,W 1 1 
C,D,F,L,M,N,O,P,Q,R,U,V,X 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 I CYS 23 1_555 A SG CYS 88 I CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 A SG CYS 134 I CYS 134 1_555 A SG CYS 194 I CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 B SG CYS 22 J CYS 22 1_555 B SG CYS 97 J CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 B SG CYS 146 J CYS 146 1_555 B SG CYS 202 J CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 C SG CYS 23 L CYS 23 1_555 C SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf6 C SG CYS 134 L CYS 134 1_555 C SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 D SG CYS 146 H CYS 146 1_555 D SG CYS 202 H CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf8 E SG CYS 7 M CYS 313 1_555 E SG CYS 32 M CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf9 E SG CYS 140 M CYS 446 1_555 E SG CYS 169 M CYS 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf10 E SG CYS 176 M CYS 482 1_555 E SG CYS 185 M CYS 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf11 E SG CYS 180 M CYS 486 1_555 E SG CYS 193 M CYS 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf12 F SG CYS 7 N CYS 313 1_555 F SG CYS 32 N CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf13 F SG CYS 140 N CYS 446 1_555 F SG CYS 169 N CYS 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf14 F SG CYS 176 N CYS 482 1_555 F SG CYS 185 N CYS 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf15 F SG CYS 180 N CYS 486 1_555 F SG CYS 193 N CYS 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 175 n n 
C1 C2 GOL sing 176 n n 
C1 H11 GOL sing 177 n n 
C1 H12 GOL sing 178 n n 
O1 HO1 GOL sing 179 n n 
C2 O2 GOL sing 180 n n 
C2 C3 GOL sing 181 n n 
C2 H2 GOL sing 182 n n 
O2 HO2 GOL sing 183 n n 
C3 O3 GOL sing 184 n n 
C3 H31 GOL sing 185 n n 
C3 H32 GOL sing 186 n n 
O3 HO3 GOL sing 187 n n 
#
_atom_sites.entry_id                     5SX4 
_atom_sites.fract_transf_matrix[1][1]    0.01532 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008835 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004302 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 SO4 I 1 301 2 SO4 SO4 . 
H 4 SO4 I 1 302 7 SO4 SO4 . 
I 4 SO4 I 1 303 8 SO4 SO4 . 
J 5 GOL I 1 304 2 GOL GOL . 
K 6 1PE J 1 301 2 1PE 1PE . 
L 4 SO4 L 1 301 1 SO4 SO4 . 
M 4 SO4 L 1 302 3 SO4 SO4 . 
N 4 SO4 L 1 303 4 SO4 SO4 . 
O 4 SO4 L 1 304 6 SO4 SO4 . 
P 6 1PE H 1 301 1 1PE 1PE . 
Q 7 EDO H 1 302 1 EDO EDO . 
R 4 SO4 N 1 601 5 SO4 SO4 . 
S 8 HOH I 1 401 47 HOH HOH . 
S 8 HOH I 2 402 20 HOH HOH . 
S 8 HOH I 3 403 114 HOH HOH . 
S 8 HOH I 4 404 84 HOH HOH . 
S 8 HOH I 5 405 37 HOH HOH . 
S 8 HOH I 6 406 63 HOH HOH . 
S 8 HOH I 7 407 50 HOH HOH . 
S 8 HOH I 8 408 5 HOH HOH . 
S 8 HOH I 9 409 21 HOH HOH . 
S 8 HOH I 10 410 81 HOH HOH . 
S 8 HOH I 11 411 115 HOH HOH . 
S 8 HOH I 12 412 112 HOH HOH . 
S 8 HOH I 13 413 6 HOH HOH . 
S 8 HOH I 14 414 14 HOH HOH . 
S 8 HOH I 15 415 34 HOH HOH . 
S 8 HOH I 16 416 26 HOH HOH . 
S 8 HOH I 17 417 113 HOH HOH . 
S 8 HOH I 18 418 8 HOH HOH . 
S 8 HOH I 19 419 49 HOH HOH . 
S 8 HOH I 20 420 72 HOH HOH . 
S 8 HOH I 21 421 98 HOH HOH . 
S 8 HOH I 22 422 71 HOH HOH . 
S 8 HOH I 23 423 27 HOH HOH . 
S 8 HOH I 24 424 60 HOH HOH . 
S 8 HOH I 25 425 74 HOH HOH . 
S 8 HOH I 26 426 95 HOH HOH . 
S 8 HOH I 27 427 12 HOH HOH . 
S 8 HOH I 28 428 65 HOH HOH . 
S 8 HOH I 29 429 96 HOH HOH . 
S 8 HOH I 30 430 100 HOH HOH . 
S 8 HOH I 31 431 68 HOH HOH . 
S 8 HOH I 32 432 67 HOH HOH . 
S 8 HOH I 33 433 70 HOH HOH . 
S 8 HOH I 34 434 92 HOH HOH . 
S 8 HOH I 35 435 75 HOH HOH . 
S 8 HOH I 36 436 56 HOH HOH . 
T 8 HOH J 1 401 51 HOH HOH . 
T 8 HOH J 2 402 22 HOH HOH . 
T 8 HOH J 3 403 25 HOH HOH . 
T 8 HOH J 4 404 62 HOH HOH . 
T 8 HOH J 5 405 11 HOH HOH . 
T 8 HOH J 6 406 41 HOH HOH . 
T 8 HOH J 7 407 15 HOH HOH . 
T 8 HOH J 8 408 1 HOH HOH . 
T 8 HOH J 9 409 58 HOH HOH . 
T 8 HOH J 10 410 43 HOH HOH . 
T 8 HOH J 11 411 101 HOH HOH . 
T 8 HOH J 12 412 36 HOH HOH . 
T 8 HOH J 13 413 78 HOH HOH . 
T 8 HOH J 14 414 102 HOH HOH . 
T 8 HOH J 15 415 88 HOH HOH . 
T 8 HOH J 16 416 10 HOH HOH . 
U 8 HOH L 1 401 73 HOH HOH . 
U 8 HOH L 2 402 23 HOH HOH . 
U 8 HOH L 3 403 3 HOH HOH . 
U 8 HOH L 4 404 90 HOH HOH . 
U 8 HOH L 5 405 94 HOH HOH . 
U 8 HOH L 6 406 103 HOH HOH . 
U 8 HOH L 7 407 19 HOH HOH . 
U 8 HOH L 8 408 52 HOH HOH . 
U 8 HOH L 9 409 39 HOH HOH . 
U 8 HOH L 10 410 35 HOH HOH . 
U 8 HOH L 11 411 44 HOH HOH . 
U 8 HOH L 12 412 30 HOH HOH . 
U 8 HOH L 13 413 48 HOH HOH . 
U 8 HOH L 14 414 54 HOH HOH . 
U 8 HOH L 15 415 59 HOH HOH . 
U 8 HOH L 16 416 45 HOH HOH . 
U 8 HOH L 17 417 46 HOH HOH . 
U 8 HOH L 18 418 40 HOH HOH . 
U 8 HOH L 19 419 116 HOH HOH . 
U 8 HOH L 20 420 42 HOH HOH . 
U 8 HOH L 21 421 16 HOH HOH . 
U 8 HOH L 22 422 80 HOH HOH . 
U 8 HOH L 23 423 82 HOH HOH . 
U 8 HOH L 24 424 108 HOH HOH . 
U 8 HOH L 25 425 77 HOH HOH . 
V 8 HOH H 1 401 89 HOH HOH . 
V 8 HOH H 2 402 17 HOH HOH . 
V 8 HOH H 3 403 24 HOH HOH . 
V 8 HOH H 4 404 9 HOH HOH . 
V 8 HOH H 5 405 91 HOH HOH . 
V 8 HOH H 6 406 105 HOH HOH . 
V 8 HOH H 7 407 86 HOH HOH . 
V 8 HOH H 8 408 83 HOH HOH . 
V 8 HOH H 9 409 107 HOH HOH . 
V 8 HOH H 10 410 2 HOH HOH . 
V 8 HOH H 11 411 111 HOH HOH . 
V 8 HOH H 12 412 55 HOH HOH . 
V 8 HOH H 13 413 57 HOH HOH . 
V 8 HOH H 14 414 64 HOH HOH . 
V 8 HOH H 15 415 109 HOH HOH . 
V 8 HOH H 16 416 106 HOH HOH . 
V 8 HOH H 17 417 97 HOH HOH . 
V 8 HOH H 18 418 7 HOH HOH . 
V 8 HOH H 19 419 61 HOH HOH . 
V 8 HOH H 20 420 117 HOH HOH . 
V 8 HOH H 21 421 38 HOH HOH . 
V 8 HOH H 22 422 85 HOH HOH . 
V 8 HOH H 23 423 99 HOH HOH . 
V 8 HOH H 24 424 69 HOH HOH . 
V 8 HOH H 25 425 33 HOH HOH . 
W 8 HOH M 1 601 4 HOH HOH . 
W 8 HOH M 2 602 110 HOH HOH . 
W 8 HOH M 3 603 13 HOH HOH . 
W 8 HOH M 4 604 76 HOH HOH . 
W 8 HOH M 5 605 93 HOH HOH . 
W 8 HOH M 6 606 18 HOH HOH . 
W 8 HOH M 7 607 32 HOH HOH . 
W 8 HOH M 8 608 28 HOH HOH . 
W 8 HOH M 9 609 29 HOH HOH . 
W 8 HOH M 10 610 53 HOH HOH . 
X 8 HOH N 1 701 79 HOH HOH . 
X 8 HOH N 2 702 66 HOH HOH . 
X 8 HOH N 3 703 87 HOH HOH . 
X 8 HOH N 4 704 104 HOH HOH . 
X 8 HOH N 5 705 31 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 5 12.534 7.079 -21.805 1 55.29 ? C1 GOL 304 I 1 
HETATM 2 O O1 GOL . . . J 5 12.808 7.911 -20.699 1 56.72 ? O1 GOL 304 I 1 
HETATM 3 C C2 GOL . . . J 5 11.69 7.83 -22.83 1 58.42 ? C2 GOL 304 I 1 
HETATM 4 O O2 GOL . . . J 5 11.902 9.218 -22.697 1 50.08 ? O2 GOL 304 I 1 
HETATM 5 C C3 GOL . . . J 5 12.083 7.39 -24.235 1 62.4 ? C3 GOL 304 I 1 
HETATM 6 O O3 GOL . . . J 5 11.263 8.034 -25.184 1 69.27 ? O3 GOL 304 I 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#