data_5SX5
#
_model_server_result.job_id            SpInUJpln2MrH0uhzSD-ZQ 
_model_server_result.datetime_utc      '2024-11-25 16:59:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5sx5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":307}' 
#
_entry.id    5SX5 
#
_exptl.entry_id    5SX5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5SX5 
_cell.length_a            65.073 
_cell.length_b            113.106 
_cell.length_c            231.403 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5SX5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,G,H,I,J,K,L,M,N,CA,DA,GA 1 1 
C,D,F,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,EA,FA,HA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 J N N 
? 5 K N N 
? 5 U N N 
? 5 Z N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 K CYS 23 1_555 A SG CYS 88 K CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 A SG CYS 134 K CYS 134 1_555 A SG CYS 194 K CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 B SG CYS 22 J CYS 22 1_555 B SG CYS 97 J CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 B SG CYS 146 J CYS 146 1_555 B SG CYS 202 J CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf5 C SG CYS 23 L CYS 23 1_555 C SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf6 C SG CYS 134 L CYS 134 1_555 C SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf7 D SG CYS 146 H CYS 146 1_555 D SG CYS 202 H CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf8 E SG CYS 7 M CYS 313 1_555 E SG CYS 32 M CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf9 E SG CYS 140 M CYS 446 1_555 E SG CYS 169 M CYS 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf10 E SG CYS 176 M CYS 482 1_555 E SG CYS 185 M CYS 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf11 F SG CYS 7 N CYS 313 1_555 F SG CYS 32 N CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf12 F SG CYS 140 N CYS 446 1_555 F SG CYS 169 N CYS 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf13 F SG CYS 176 N CYS 482 1_555 F SG CYS 185 N CYS 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf14 F SG CYS 180 N CYS 486 1_555 F SG CYS 193 N CYS 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 175 n n 
C1 C2 GOL sing 176 n n 
C1 H11 GOL sing 177 n n 
C1 H12 GOL sing 178 n n 
O1 HO1 GOL sing 179 n n 
C2 O2 GOL sing 180 n n 
C2 C3 GOL sing 181 n n 
C2 H2 GOL sing 182 n n 
O2 HO2 GOL sing 183 n n 
C3 O3 GOL sing 184 n n 
C3 H31 GOL sing 185 n n 
C3 H32 GOL sing 186 n n 
O3 HO3 GOL sing 187 n n 
#
_atom_sites.entry_id                     5SX5 
_atom_sites.fract_transf_matrix[1][1]    0.015367 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008841 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004321 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 SO4 K 1 301 1 SO4 SO4 . 
H 4 SO4 K 1 302 4 SO4 SO4 . 
I 4 SO4 K 1 303 9 SO4 SO4 . 
J 5 GOL K 1 304 1 GOL GOL . 
K 5 GOL K 1 305 4 GOL GOL . 
L 6 EDO K 1 306 1 EDO EDO . 
M 7 1PE J 1 301 3 1PE 1PE . 
N 6 EDO J 1 302 4 EDO EDO . 
O 4 SO4 L 1 301 3 SO4 SO4 . 
P 4 SO4 L 1 302 5 SO4 SO4 . 
Q 4 SO4 L 1 303 6 SO4 SO4 . 
R 4 SO4 L 1 304 7 SO4 SO4 . 
S 4 SO4 L 1 305 8 SO4 SO4 . 
T 7 1PE L 1 306 2 1PE 1PE . 
U 5 GOL L 1 307 3 GOL GOL . 
V 4 SO4 H 1 301 10 SO4 SO4 . 
W 4 SO4 H 1 302 11 SO4 SO4 . 
X 4 SO4 H 1 303 12 SO4 SO4 . 
Y 7 1PE H 1 304 1 1PE 1PE . 
Z 5 GOL H 1 305 2 GOL GOL . 
AA 6 EDO H 1 306 3 EDO EDO . 
BA 4 SO4 N 1 601 2 SO4 SO4 . 
CA 8 HOH K 1 401 32 HOH HOH . 
CA 8 HOH K 2 402 2 HOH HOH . 
CA 8 HOH K 3 403 108 HOH HOH . 
CA 8 HOH K 4 404 60 HOH HOH . 
CA 8 HOH K 5 405 102 HOH HOH . 
CA 8 HOH K 6 406 121 HOH HOH . 
CA 8 HOH K 7 407 17 HOH HOH . 
CA 8 HOH K 8 408 48 HOH HOH . 
CA 8 HOH K 9 409 13 HOH HOH . 
CA 8 HOH K 10 410 11 HOH HOH . 
CA 8 HOH K 11 411 83 HOH HOH . 
CA 8 HOH K 12 412 107 HOH HOH . 
CA 8 HOH K 13 413 106 HOH HOH . 
CA 8 HOH K 14 414 49 HOH HOH . 
CA 8 HOH K 15 415 65 HOH HOH . 
CA 8 HOH K 16 416 78 HOH HOH . 
CA 8 HOH K 17 417 15 HOH HOH . 
CA 8 HOH K 18 418 38 HOH HOH . 
CA 8 HOH K 19 419 125 HOH HOH . 
CA 8 HOH K 20 420 43 HOH HOH . 
CA 8 HOH K 21 421 29 HOH HOH . 
CA 8 HOH K 22 422 27 HOH HOH . 
CA 8 HOH K 23 423 44 HOH HOH . 
CA 8 HOH K 24 424 137 HOH HOH . 
CA 8 HOH K 25 425 131 HOH HOH . 
CA 8 HOH K 26 426 47 HOH HOH . 
CA 8 HOH K 27 427 96 HOH HOH . 
CA 8 HOH K 28 428 10 HOH HOH . 
CA 8 HOH K 29 429 52 HOH HOH . 
CA 8 HOH K 30 430 3 HOH HOH . 
CA 8 HOH K 31 431 93 HOH HOH . 
CA 8 HOH K 32 432 55 HOH HOH . 
CA 8 HOH K 33 433 25 HOH HOH . 
CA 8 HOH K 34 434 99 HOH HOH . 
CA 8 HOH K 35 435 114 HOH HOH . 
CA 8 HOH K 36 436 28 HOH HOH . 
CA 8 HOH K 37 437 63 HOH HOH . 
CA 8 HOH K 38 438 68 HOH HOH . 
CA 8 HOH K 39 439 111 HOH HOH . 
CA 8 HOH K 40 440 89 HOH HOH . 
CA 8 HOH K 41 441 92 HOH HOH . 
CA 8 HOH K 42 442 132 HOH HOH . 
CA 8 HOH K 43 443 97 HOH HOH . 
DA 8 HOH J 1 401 34 HOH HOH . 
DA 8 HOH J 2 402 67 HOH HOH . 
DA 8 HOH J 3 403 6 HOH HOH . 
DA 8 HOH J 4 404 123 HOH HOH . 
DA 8 HOH J 5 405 127 HOH HOH . 
DA 8 HOH J 6 406 1 HOH HOH . 
DA 8 HOH J 7 407 51 HOH HOH . 
DA 8 HOH J 8 408 4 HOH HOH . 
DA 8 HOH J 9 409 80 HOH HOH . 
DA 8 HOH J 10 410 75 HOH HOH . 
DA 8 HOH J 11 411 76 HOH HOH . 
DA 8 HOH J 12 412 126 HOH HOH . 
DA 8 HOH J 13 413 115 HOH HOH . 
DA 8 HOH J 14 414 138 HOH HOH . 
DA 8 HOH J 15 415 105 HOH HOH . 
DA 8 HOH J 16 416 66 HOH HOH . 
DA 8 HOH J 17 417 64 HOH HOH . 
DA 8 HOH J 18 418 46 HOH HOH . 
DA 8 HOH J 19 419 135 HOH HOH . 
DA 8 HOH J 20 420 61 HOH HOH . 
DA 8 HOH J 21 421 124 HOH HOH . 
EA 8 HOH L 1 401 39 HOH HOH . 
EA 8 HOH L 2 402 20 HOH HOH . 
EA 8 HOH L 3 403 5 HOH HOH . 
EA 8 HOH L 4 404 14 HOH HOH . 
EA 8 HOH L 5 405 21 HOH HOH . 
EA 8 HOH L 6 406 103 HOH HOH . 
EA 8 HOH L 7 407 90 HOH HOH . 
EA 8 HOH L 8 408 8 HOH HOH . 
EA 8 HOH L 9 409 129 HOH HOH . 
EA 8 HOH L 10 410 85 HOH HOH . 
EA 8 HOH L 11 411 50 HOH HOH . 
EA 8 HOH L 12 412 40 HOH HOH . 
EA 8 HOH L 13 413 58 HOH HOH . 
EA 8 HOH L 14 414 30 HOH HOH . 
EA 8 HOH L 15 415 95 HOH HOH . 
EA 8 HOH L 16 416 35 HOH HOH . 
EA 8 HOH L 17 417 37 HOH HOH . 
EA 8 HOH L 18 418 113 HOH HOH . 
EA 8 HOH L 19 419 72 HOH HOH . 
EA 8 HOH L 20 420 31 HOH HOH . 
EA 8 HOH L 21 421 12 HOH HOH . 
EA 8 HOH L 22 422 9 HOH HOH . 
EA 8 HOH L 23 423 73 HOH HOH . 
EA 8 HOH L 24 424 59 HOH HOH . 
EA 8 HOH L 25 425 101 HOH HOH . 
EA 8 HOH L 26 426 119 HOH HOH . 
EA 8 HOH L 27 427 77 HOH HOH . 
EA 8 HOH L 28 428 128 HOH HOH . 
EA 8 HOH L 29 429 134 HOH HOH . 
EA 8 HOH L 30 430 18 HOH HOH . 
EA 8 HOH L 31 431 74 HOH HOH . 
EA 8 HOH L 32 432 109 HOH HOH . 
EA 8 HOH L 33 433 94 HOH HOH . 
EA 8 HOH L 34 434 112 HOH HOH . 
EA 8 HOH L 35 435 110 HOH HOH . 
EA 8 HOH L 36 436 118 HOH HOH . 
EA 8 HOH L 37 437 104 HOH HOH . 
EA 8 HOH L 38 438 116 HOH HOH . 
FA 8 HOH H 1 401 56 HOH HOH . 
FA 8 HOH H 2 402 122 HOH HOH . 
FA 8 HOH H 3 403 82 HOH HOH . 
FA 8 HOH H 4 404 24 HOH HOH . 
FA 8 HOH H 5 405 33 HOH HOH . 
FA 8 HOH H 6 406 26 HOH HOH . 
FA 8 HOH H 7 407 53 HOH HOH . 
FA 8 HOH H 8 408 54 HOH HOH . 
FA 8 HOH H 9 409 7 HOH HOH . 
FA 8 HOH H 10 410 16 HOH HOH . 
FA 8 HOH H 11 411 117 HOH HOH . 
FA 8 HOH H 12 412 42 HOH HOH . 
FA 8 HOH H 13 413 136 HOH HOH . 
FA 8 HOH H 14 414 100 HOH HOH . 
FA 8 HOH H 15 415 79 HOH HOH . 
FA 8 HOH H 16 416 86 HOH HOH . 
FA 8 HOH H 17 417 81 HOH HOH . 
FA 8 HOH H 18 418 62 HOH HOH . 
FA 8 HOH H 19 419 133 HOH HOH . 
FA 8 HOH H 20 420 91 HOH HOH . 
FA 8 HOH H 21 421 45 HOH HOH . 
FA 8 HOH H 22 422 57 HOH HOH . 
FA 8 HOH H 23 423 130 HOH HOH . 
FA 8 HOH H 24 424 23 HOH HOH . 
FA 8 HOH H 25 425 70 HOH HOH . 
FA 8 HOH H 26 426 88 HOH HOH . 
FA 8 HOH H 27 427 22 HOH HOH . 
FA 8 HOH H 28 428 84 HOH HOH . 
FA 8 HOH H 29 429 120 HOH HOH . 
FA 8 HOH H 30 430 87 HOH HOH . 
GA 8 HOH M 1 1601 71 HOH HOH . 
GA 8 HOH M 2 1602 139 HOH HOH . 
GA 8 HOH M 3 1603 98 HOH HOH . 
GA 8 HOH M 4 1604 36 HOH HOH . 
HA 8 HOH N 1 701 69 HOH HOH . 
HA 8 HOH N 2 702 41 HOH HOH . 
HA 8 HOH N 3 703 19 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . U 5 48.699 6.889 20.796 1 57.67 ? C1 GOL 307 L 1 
HETATM 2 O O1 GOL . . . U 5 47.701 6.654 19.828 1 56.42 ? O1 GOL 307 L 1 
HETATM 3 C C2 GOL . . . U 5 48.598 8.327 21.29 1 53.57 ? C2 GOL 307 L 1 
HETATM 4 O O2 GOL . . . U 5 47.33 8.848 20.955 1 44.09 ? O2 GOL 307 L 1 
HETATM 5 C C3 GOL . . . U 5 48.782 8.358 22.803 1 56.6 ? C3 GOL 307 L 1 
HETATM 6 O O3 GOL . . . U 5 48.698 9.688 23.263 1 57.1 ? O3 GOL 307 L 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#