data_5SX8
#
_model_server_result.job_id            1thqdGFDbrUxuEkCq3GyXg 
_model_server_result.datetime_utc      '2024-11-01 04:27:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5sx8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1102}' 
#
_entry.id    5SX8 
#
_exptl.entry_id    5SX8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              164.122 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            pteridine-2,4(1H,3H)-dione 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5SX8 
_cell.length_a            113.89 
_cell.length_b            116.33 
_cell.length_c            148.127 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5SX8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MET 817 A MET 789 1_555 A N SEP 818 A SEP 790 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale2 A C SEP 818 A SEP 790 1_555 A N GLU 819 A GLU 791 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C6 H4 N4 O2' 
_chem_comp.formula_weight    164.122 
_chem_comp.id                LUZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              pteridine-2,4(1H,3H)-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Lumazine;2,4-dihydroxypteridine;2,4-pteridinediol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 LUZ sing 208 n n 
N1 C10 LUZ sing 209 n n 
C2 O2 LUZ doub 210 n n 
C2 N3 LUZ sing 211 n n 
C10 C4A LUZ doub 212 n y 
C10 N10 LUZ sing 213 n y 
N3 C4 LUZ sing 214 n n 
C4 O4 LUZ doub 215 n n 
C4 C4A LUZ sing 216 n n 
C4A N5 LUZ sing 217 n y 
N5 C5A LUZ doub 218 n y 
C5A C9A LUZ sing 219 n y 
C9A N10 LUZ doub 220 n y 
N1 HN1 LUZ sing 221 n n 
N3 HN3 LUZ sing 222 n n 
C5A H5A LUZ sing 223 n n 
C9A H9A LUZ sing 224 n n 
#
_atom_sites.entry_id                     5SX8 
_atom_sites.fract_transf_matrix[1][1]    0.00878 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008596 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006751 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 71M A 1 1101 2 71M 2A7 . 
D 4 LUZ A 1 1102 1 LUZ 2C7 . 
E 3 71M B 1 701 1 71M 2A7 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 LUZ . . . D 4 82.772 51.88 74.939 1 217.7 ? N1 LUZ 1102 A 1 
HETATM 2 C C2 LUZ . . . D 4 83.953 51.251 74.679 1 213.53 ? C2 LUZ 1102 A 1 
HETATM 3 C C10 LUZ . . . D 4 82.488 52.35 76.185 1 222.21 ? C10 LUZ 1102 A 1 
HETATM 4 O O2 LUZ . . . D 4 84.219 50.788 73.424 1 193.96 ? O2 LUZ 1102 A 1 
HETATM 5 N N3 LUZ . . . D 4 84.874 51.08 75.663 1 219.78 ? N3 LUZ 1102 A 1 
HETATM 6 C C4 LUZ . . . D 4 84.638 51.532 76.924 1 224.02 ? C4 LUZ 1102 A 1 
HETATM 7 O O4 LUZ . . . D 4 85.585 51.342 77.887 1 219.74 ? O4 LUZ 1102 A 1 
HETATM 8 C C4A LUZ . . . D 4 83.428 52.182 77.212 1 224.64 ? C4A LUZ 1102 A 1 
HETATM 9 N N5 LUZ . . . D 4 83.142 52.652 78.457 1 218.34 ? N5 LUZ 1102 A 1 
HETATM 10 C C5A LUZ . . . D 4 81.97 53.269 78.703 1 211.56 ? C5A LUZ 1102 A 1 
HETATM 11 C C9A LUZ . . . D 4 81.034 53.439 77.679 1 206.32 ? C9A LUZ 1102 A 1 
HETATM 12 N N10 LUZ . . . D 4 81.307 52.978 76.445 1 215.78 ? N10 LUZ 1102 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    53 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           12 
#