data_5SXA # _model_server_result.job_id X4IdYkuMEvuBEymVgpLzNw _model_server_result.datetime_utc '2024-11-04 20:30:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sxa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1101}' # _entry.id 5SXA # _exptl.entry_id 5SXA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 201.149 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(trifluoromethyl)-1H-benzimidazol-5-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SXA _cell.length_a 115.225 _cell.length_b 117.367 _cell.length_c 152.057 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SXA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SEP 35 A SEP 7 1_555 A N GLY 36 A GLY 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C ASN 185 A ASN 157 1_555 A N SEP 186 A SEP 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C SEP 186 A SEP 158 1_555 A N PRO 187 A PRO 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 A C MET 817 A MET 789 1_555 A N SEP 818 A SEP 790 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale5 A C SEP 818 A SEP 790 1_555 A N GLU 819 A GLU 791 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C8 H6 F3 N3' _chem_comp.formula_weight 201.149 _chem_comp.id 71N _chem_comp.mon_nstd_flag . _chem_comp.name 2-(trifluoromethyl)-1H-benzimidazol-5-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F2 C1 71N sing 1 n n F3 C1 71N sing 2 n n C1 F1 71N sing 3 n n C1 C4 71N sing 4 n n C4 N5 71N sing 5 n y C4 N6 71N doub 6 n y N5 C7 71N sing 7 n y N6 C12 71N sing 8 n y C7 C12 71N doub 9 n y C7 C8 71N sing 10 n y C12 C11 71N sing 11 n y C8 C9 71N doub 12 n y C11 C10 71N doub 13 n y C9 C10 71N sing 14 n y C10 N13 71N sing 15 n n C11 H1 71N sing 16 n n C8 H2 71N sing 17 n n C9 H3 71N sing 18 n n N5 H4 71N sing 19 n n N13 H6 71N sing 20 n n N13 H7 71N sing 21 n n # _atom_sites.entry_id 5SXA _atom_sites.fract_transf_matrix[1][1] 0.008679 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00852 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006576 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id 71N _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 71N _pdbx_nonpoly_scheme.auth_mon_id 2B2 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F3 71N . . . C 3 65.624 83.959 81.585 1 202.44 ? F3 71N 1101 A 1 HETATM 2 F F1 71N . . . C 3 66.846 82.72 82.842 1 203.46 ? F1 71N 1101 A 1 HETATM 3 F F2 71N . . . C 3 65.612 81.826 81.309 1 203.98 ? F2 71N 1101 A 1 HETATM 4 C C12 71N . . . C 3 63.002 83.179 84.519 1 216.83 ? C12 71N 1101 A 1 HETATM 5 C C11 71N . . . C 3 62.04 83.765 85.339 1 208.2 ? C11 71N 1101 A 1 HETATM 6 C C8 71N . . . C 3 62.248 80.975 85.204 1 208.31 ? C8 71N 1101 A 1 HETATM 7 C C7 71N . . . C 3 63.109 81.777 84.449 1 215.24 ? C7 71N 1101 A 1 HETATM 8 C C9 71N . . . C 3 61.285 81.566 86.025 1 205.32 ? C9 71N 1101 A 1 HETATM 9 C C10 71N . . . C 3 61.183 82.96 86.091 1 206.36 ? C10 71N 1101 A 1 HETATM 10 C C4 71N . . . C 3 64.562 82.661 83.182 1 217.52 ? C4 71N 1101 A 1 HETATM 11 C C1 71N . . . C 3 65.694 82.795 82.202 1 209.16 ? C1 71N 1101 A 1 HETATM 12 N N5 71N . . . C 3 64.103 81.479 83.596 1 215.63 ? N5 71N 1101 A 1 HETATM 13 N N6 71N . . . C 3 63.934 83.726 83.706 1 221.81 ? N6 71N 1101 A 1 HETATM 14 N N13 71N . . . C 3 60.158 83.586 86.964 1 203.5 ? N13 71N 1101 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #