data_5SXH
#
_model_server_result.job_id            62RKmV57RTmhJ2r0_YC9qA 
_model_server_result.datetime_utc      '2024-10-19 11:31:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5sxh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":402}' 
#
_entry.id    5SXH 
#
_exptl.entry_id    5SXH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.96 
_cell.angle_gamma         90 
_cell.entry_id            5SXH 
_cell.length_a            44.39 
_cell.length_b            50.99 
_cell.length_c            77.41 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5SXH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I 1 1 
A,B,C,D,E,F,G,H,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 60 A HIS 253 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc2 A SG CYS 91 A CYS 284 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc3 A SG CYS 96 A CYS 289 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc4 C ZN ZN . A ZN 401 1_555 H O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc5 B ND1 HIS 60 B HIS 253 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc6 B SG CYS 91 B CYS 284 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc7 B SG CYS 96 B CYS 289 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc8 F ZN ZN . B ZN 401 1_555 I O HOH . B HOH 570 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5SXH 
_atom_sites.fract_transf_matrix[1][1]    0.022528 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004772 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019612 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013205 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 401 401 ZN ZN . 
D 3 EDO A 1 402 402 EDO EDO . 
E 3 EDO A 1 403 403 EDO EDO . 
F 2 ZN B 1 401 401 ZN ZN . 
G 3 EDO B 1 402 402 EDO EDO . 
H 4 HOH A 1 501 501 HOH HOH . 
H 4 HOH A 2 502 503 HOH HOH . 
H 4 HOH A 3 503 504 HOH HOH . 
H 4 HOH A 4 504 507 HOH HOH . 
H 4 HOH A 5 505 505 HOH HOH . 
H 4 HOH A 6 506 502 HOH HOH . 
H 4 HOH A 7 507 506 HOH HOH . 
H 4 HOH A 8 508 511 HOH HOH . 
H 4 HOH A 9 509 513 HOH HOH . 
H 4 HOH A 10 510 521 HOH HOH . 
H 4 HOH A 11 511 526 HOH HOH . 
H 4 HOH A 12 512 509 HOH HOH . 
H 4 HOH A 13 513 545 HOH HOH . 
H 4 HOH A 14 514 523 HOH HOH . 
H 4 HOH A 15 515 514 HOH HOH . 
H 4 HOH A 16 516 512 HOH HOH . 
H 4 HOH A 17 517 508 HOH HOH . 
H 4 HOH A 18 518 515 HOH HOH . 
H 4 HOH A 19 519 525 HOH HOH . 
H 4 HOH A 20 520 529 HOH HOH . 
H 4 HOH A 21 521 518 HOH HOH . 
H 4 HOH A 22 522 510 HOH HOH . 
H 4 HOH A 23 523 547 HOH HOH . 
H 4 HOH A 24 524 519 HOH HOH . 
H 4 HOH A 25 525 520 HOH HOH . 
H 4 HOH A 26 526 528 HOH HOH . 
H 4 HOH A 27 527 516 HOH HOH . 
H 4 HOH A 28 528 527 HOH HOH . 
H 4 HOH A 29 529 538 HOH HOH . 
H 4 HOH A 30 530 532 HOH HOH . 
H 4 HOH A 31 531 531 HOH HOH . 
H 4 HOH A 32 532 517 HOH HOH . 
H 4 HOH A 33 533 524 HOH HOH . 
H 4 HOH A 34 534 533 HOH HOH . 
H 4 HOH A 35 535 539 HOH HOH . 
H 4 HOH A 36 536 550 HOH HOH . 
H 4 HOH A 37 537 535 HOH HOH . 
H 4 HOH A 38 538 522 HOH HOH . 
H 4 HOH A 39 539 534 HOH HOH . 
H 4 HOH A 40 540 537 HOH HOH . 
H 4 HOH A 41 541 546 HOH HOH . 
H 4 HOH A 42 542 530 HOH HOH . 
H 4 HOH A 43 543 536 HOH HOH . 
H 4 HOH A 44 544 548 HOH HOH . 
H 4 HOH A 45 545 544 HOH HOH . 
H 4 HOH A 46 546 551 HOH HOH . 
H 4 HOH A 47 547 558 HOH HOH . 
H 4 HOH A 48 548 556 HOH HOH . 
H 4 HOH A 49 549 542 HOH HOH . 
H 4 HOH A 50 550 540 HOH HOH . 
H 4 HOH A 51 551 549 HOH HOH . 
H 4 HOH A 52 552 555 HOH HOH . 
H 4 HOH A 53 553 574 HOH HOH . 
H 4 HOH A 54 554 554 HOH HOH . 
H 4 HOH A 55 555 553 HOH HOH . 
H 4 HOH A 56 556 559 HOH HOH . 
H 4 HOH A 57 557 588 HOH HOH . 
H 4 HOH A 58 558 566 HOH HOH . 
H 4 HOH A 59 559 563 HOH HOH . 
H 4 HOH A 60 560 557 HOH HOH . 
H 4 HOH A 61 561 586 HOH HOH . 
H 4 HOH A 62 562 564 HOH HOH . 
H 4 HOH A 63 563 543 HOH HOH . 
H 4 HOH A 64 564 560 HOH HOH . 
H 4 HOH A 65 565 541 HOH HOH . 
H 4 HOH A 66 566 565 HOH HOH . 
H 4 HOH A 67 567 561 HOH HOH . 
H 4 HOH A 68 568 571 HOH HOH . 
H 4 HOH A 69 569 569 HOH HOH . 
H 4 HOH A 70 570 552 HOH HOH . 
H 4 HOH A 71 571 579 HOH HOH . 
H 4 HOH A 72 572 578 HOH HOH . 
H 4 HOH A 73 573 572 HOH HOH . 
H 4 HOH A 74 574 567 HOH HOH . 
H 4 HOH A 75 575 570 HOH HOH . 
H 4 HOH A 76 576 595 HOH HOH . 
H 4 HOH A 77 577 568 HOH HOH . 
H 4 HOH A 78 578 581 HOH HOH . 
H 4 HOH A 79 579 582 HOH HOH . 
H 4 HOH A 80 580 575 HOH HOH . 
H 4 HOH A 81 581 562 HOH HOH . 
H 4 HOH A 82 582 573 HOH HOH . 
H 4 HOH A 83 583 594 HOH HOH . 
H 4 HOH A 84 584 577 HOH HOH . 
H 4 HOH A 85 585 583 HOH HOH . 
H 4 HOH A 86 586 576 HOH HOH . 
H 4 HOH A 87 587 587 HOH HOH . 
H 4 HOH A 88 588 585 HOH HOH . 
H 4 HOH A 89 589 580 HOH HOH . 
H 4 HOH A 90 590 584 HOH HOH . 
H 4 HOH A 91 591 591 HOH HOH . 
H 4 HOH A 92 592 592 HOH HOH . 
H 4 HOH A 93 593 593 HOH HOH . 
H 4 HOH A 94 594 596 HOH HOH . 
H 4 HOH A 95 595 589 HOH HOH . 
H 4 HOH A 96 596 590 HOH HOH . 
H 4 HOH A 97 597 597 HOH HOH . 
H 4 HOH A 98 598 601 HOH HOH . 
H 4 HOH A 99 599 598 HOH HOH . 
H 4 HOH A 100 600 599 HOH HOH . 
H 4 HOH A 101 601 605 HOH HOH . 
H 4 HOH A 102 602 600 HOH HOH . 
H 4 HOH A 103 603 602 HOH HOH . 
H 4 HOH A 104 604 606 HOH HOH . 
H 4 HOH A 105 605 604 HOH HOH . 
H 4 HOH A 106 606 608 HOH HOH . 
H 4 HOH A 107 607 607 HOH HOH . 
H 4 HOH A 108 608 592 HOH HOH . 
H 4 HOH A 109 609 609 HOH HOH . 
H 4 HOH A 110 610 610 HOH HOH . 
H 4 HOH A 111 611 612 HOH HOH . 
H 4 HOH A 112 612 611 HOH HOH . 
I 4 HOH B 1 501 504 HOH HOH . 
I 4 HOH B 2 502 502 HOH HOH . 
I 4 HOH B 3 503 501 HOH HOH . 
I 4 HOH B 4 504 505 HOH HOH . 
I 4 HOH B 5 505 506 HOH HOH . 
I 4 HOH B 6 506 503 HOH HOH . 
I 4 HOH B 7 507 508 HOH HOH . 
I 4 HOH B 8 508 511 HOH HOH . 
I 4 HOH B 9 509 507 HOH HOH . 
I 4 HOH B 10 510 510 HOH HOH . 
I 4 HOH B 11 511 513 HOH HOH . 
I 4 HOH B 12 512 512 HOH HOH . 
I 4 HOH B 13 513 515 HOH HOH . 
I 4 HOH B 14 514 517 HOH HOH . 
I 4 HOH B 15 515 519 HOH HOH . 
I 4 HOH B 16 516 509 HOH HOH . 
I 4 HOH B 17 517 518 HOH HOH . 
I 4 HOH B 18 518 516 HOH HOH . 
I 4 HOH B 19 519 581 HOH HOH . 
I 4 HOH B 20 520 521 HOH HOH . 
I 4 HOH B 21 521 544 HOH HOH . 
I 4 HOH B 22 522 523 HOH HOH . 
I 4 HOH B 23 523 531 HOH HOH . 
I 4 HOH B 24 524 525 HOH HOH . 
I 4 HOH B 25 525 524 HOH HOH . 
I 4 HOH B 26 526 520 HOH HOH . 
I 4 HOH B 27 527 537 HOH HOH . 
I 4 HOH B 28 528 529 HOH HOH . 
I 4 HOH B 29 529 526 HOH HOH . 
I 4 HOH B 30 530 533 HOH HOH . 
I 4 HOH B 31 531 540 HOH HOH . 
I 4 HOH B 32 532 539 HOH HOH . 
I 4 HOH B 33 533 528 HOH HOH . 
I 4 HOH B 34 534 541 HOH HOH . 
I 4 HOH B 35 535 535 HOH HOH . 
I 4 HOH B 36 536 538 HOH HOH . 
I 4 HOH B 37 537 522 HOH HOH . 
I 4 HOH B 38 538 514 HOH HOH . 
I 4 HOH B 39 539 546 HOH HOH . 
I 4 HOH B 40 540 530 HOH HOH . 
I 4 HOH B 41 541 547 HOH HOH . 
I 4 HOH B 42 542 545 HOH HOH . 
I 4 HOH B 43 543 543 HOH HOH . 
I 4 HOH B 44 544 534 HOH HOH . 
I 4 HOH B 45 545 527 HOH HOH . 
I 4 HOH B 46 546 548 HOH HOH . 
I 4 HOH B 47 547 554 HOH HOH . 
I 4 HOH B 48 548 569 HOH HOH . 
I 4 HOH B 49 549 551 HOH HOH . 
I 4 HOH B 50 550 532 HOH HOH . 
I 4 HOH B 51 551 555 HOH HOH . 
I 4 HOH B 52 552 550 HOH HOH . 
I 4 HOH B 53 553 562 HOH HOH . 
I 4 HOH B 54 554 542 HOH HOH . 
I 4 HOH B 55 555 564 HOH HOH . 
I 4 HOH B 56 556 556 HOH HOH . 
I 4 HOH B 57 557 565 HOH HOH . 
I 4 HOH B 58 558 553 HOH HOH . 
I 4 HOH B 59 559 563 HOH HOH . 
I 4 HOH B 60 560 536 HOH HOH . 
I 4 HOH B 61 561 567 HOH HOH . 
I 4 HOH B 62 562 552 HOH HOH . 
I 4 HOH B 63 563 557 HOH HOH . 
I 4 HOH B 64 564 566 HOH HOH . 
I 4 HOH B 65 565 560 HOH HOH . 
I 4 HOH B 66 566 570 HOH HOH . 
I 4 HOH B 67 567 561 HOH HOH . 
I 4 HOH B 68 568 574 HOH HOH . 
I 4 HOH B 69 569 549 HOH HOH . 
I 4 HOH B 70 570 558 HOH HOH . 
I 4 HOH B 71 571 576 HOH HOH . 
I 4 HOH B 72 572 568 HOH HOH . 
I 4 HOH B 73 573 573 HOH HOH . 
I 4 HOH B 74 574 559 HOH HOH . 
I 4 HOH B 75 575 572 HOH HOH . 
I 4 HOH B 76 576 580 HOH HOH . 
I 4 HOH B 77 577 577 HOH HOH . 
I 4 HOH B 78 578 571 HOH HOH . 
I 4 HOH B 79 579 575 HOH HOH . 
I 4 HOH B 80 580 579 HOH HOH . 
I 4 HOH B 81 581 578 HOH HOH . 
I 4 HOH B 82 582 583 HOH HOH . 
I 4 HOH B 83 583 590 HOH HOH . 
I 4 HOH B 84 584 584 HOH HOH . 
I 4 HOH B 85 585 582 HOH HOH . 
I 4 HOH B 86 586 585 HOH HOH . 
I 4 HOH B 87 587 587 HOH HOH . 
I 4 HOH B 88 588 603 HOH HOH . 
I 4 HOH B 89 589 589 HOH HOH . 
I 4 HOH B 90 590 586 HOH HOH . 
I 4 HOH B 91 591 588 HOH HOH . 
I 4 HOH B 92 592 591 HOH HOH . 
I 4 HOH B 93 593 593 HOH HOH . 
I 4 HOH B 94 594 594 HOH HOH . 
I 4 HOH B 95 595 595 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 3 50.138 -6.924 25.998 1 77.68 ? C1 EDO 402 B 1 
HETATM 2 O O1 EDO . . . G 3 49.116 -7.862 26.352 1 80.11 ? O1 EDO 402 B 1 
HETATM 3 C C2 EDO . . . G 3 50.143 -5.771 26.996 1 77.9 ? C2 EDO 402 B 1 
HETATM 4 O O2 EDO . . . G 3 51.272 -4.925 26.748 1 87.21 ? O2 EDO 402 B 1 
HETATM 5 H H11 EDO . . . G 3 51.112 -7.419 26 1 93.22 ? H11 EDO 402 B 1 
HETATM 6 H H12 EDO . . . G 3 49.958 -6.542 24.991 1 93.22 ? H12 EDO 402 B 1 
HETATM 7 H HO1 EDO . . . G 3 49.094 -8.576 25.7 1 96.13 ? HO1 EDO 402 B 1 
HETATM 8 H H21 EDO . . . G 3 50.19 -6.162 28.014 1 93.48 ? H21 EDO 402 B 1 
HETATM 9 H H22 EDO . . . G 3 49.22 -5.195 26.9 1 93.48 ? H22 EDO 402 B 1 
HETATM 10 H HO2 EDO . . . G 3 51.317 -4.24 27.429 1 104.65 ? HO2 EDO 402 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#