data_5SXU
#
_model_server_result.job_id            odWQSkfnycHBRzk_qu8x1Q 
_model_server_result.datetime_utc      '2024-11-16 03:42:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5sxu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"GA","auth_seq_id":501}' 
#
_entry.id    5SXU 
#
_exptl.entry_id    5SXU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              59.11 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-AMINOPROPANE 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.13 
_cell.angle_gamma         90 
_cell.entry_id            5SXU 
_cell.length_a            105.903 
_cell.length_b            266.791 
_cell.length_c            111.109 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 5SXU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA pentameric 5 author_and_software_defined_assembly 1 
PISA pentameric 5 author_and_software_defined_assembly 2 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,MB 1 1 
F,G,H,I,J,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,NB,OB 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 O N N 
? 3 T N N 
? 3 Y N N 
? 3 EA N N 
? 3 GA N N 
? 3 PA N N 
? 3 UA N N 
? 3 ZA N N 
? 3 EB N N 
? 3 GB N N 
#
_chem_comp.formula           'C3 H9 N' 
_chem_comp.formula_weight    59.11 
_chem_comp.id                3CN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-AMINOPROPANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
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loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CA CB 3CN sing 1 n n 
CA HA1 3CN sing 2 n n 
CA HA2 3CN sing 3 n n 
CA HA3 3CN sing 4 n n 
CB CC 3CN sing 5 n n 
CB HB1 3CN sing 6 n n 
CB HB2 3CN sing 7 n n 
CC ND 3CN sing 8 n n 
CC HC1 3CN sing 9 n n 
CC HC2 3CN sing 10 n n 
ND HND1 3CN sing 11 n n 
ND HND2 3CN sing 12 n n 
#
_atom_sites.entry_id                     5SXU 
_atom_sites.fract_transf_matrix[1][1]    0.009443 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00291 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003748 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009418 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 2 BRJ A 1 401 401 BRJ BRJ . 
L 2 BRJ A 1 402 402 BRJ BRJ . 
M 2 BRJ A 1 403 403 BRJ BRJ . 
N 2 BRJ A 1 404 421 BRJ BRJ . 
O 3 3CN A 1 405 501 3CN PPA . 
P 4 MES A 1 406 1 MES MES . 
Q 2 BRJ B 1 401 401 BRJ BRJ . 
R 2 BRJ B 1 402 402 BRJ BRJ . 
S 2 BRJ B 1 403 403 BRJ BRJ . 
T 3 3CN B 1 404 501 3CN PPA . 
U 4 MES B 1 405 2 MES MES . 
V 2 BRJ C 1 401 401 BRJ BRJ . 
W 2 BRJ C 1 402 402 BRJ BRJ . 
X 2 BRJ C 1 403 403 BRJ BRJ . 
Y 3 3CN C 1 404 501 3CN PPA . 
Z 4 MES C 1 405 3 MES MES . 
AA 5 CL C 1 406 1 CL CL . 
BA 2 BRJ D 1 401 401 BRJ BRJ . 
CA 2 BRJ D 1 402 402 BRJ BRJ . 
DA 2 BRJ D 1 403 403 BRJ BRJ . 
EA 3 3CN D 1 404 501 3CN PPA . 
FA 4 MES D 1 405 4 MES MES . 
GA 3 3CN E 1 501 501 3CN PPA . 
HA 2 BRJ E 1 502 401 BRJ BRJ . 
IA 2 BRJ E 1 503 402 BRJ BRJ . 
JA 2 BRJ E 1 504 403 BRJ BRJ . 
KA 4 MES E 1 505 5 MES MES . 
LA 2 BRJ F 1 401 401 BRJ BRJ . 
MA 2 BRJ F 1 402 402 BRJ BRJ . 
NA 2 BRJ F 1 403 403 BRJ BRJ . 
OA 2 BRJ F 1 404 421 BRJ BRJ . 
PA 3 3CN F 1 405 501 3CN PPA . 
QA 4 MES F 1 406 6 MES MES . 
RA 2 BRJ G 1 401 401 BRJ BRJ . 
SA 2 BRJ G 1 402 402 BRJ BRJ . 
TA 2 BRJ G 1 403 403 BRJ BRJ . 
UA 3 3CN G 1 404 501 3CN PPA . 
VA 4 MES G 1 405 7 MES MES . 
WA 2 BRJ H 1 401 401 BRJ BRJ . 
XA 2 BRJ H 1 402 402 BRJ BRJ . 
YA 2 BRJ H 1 403 403 BRJ BRJ . 
ZA 3 3CN H 1 404 501 3CN PPA . 
AB 4 MES H 1 405 8 MES MES . 
BB 2 BRJ I 1 401 401 BRJ BRJ . 
CB 2 BRJ I 1 402 402 BRJ BRJ . 
DB 2 BRJ I 1 403 403 BRJ BRJ . 
EB 3 3CN I 1 404 501 3CN PPA . 
FB 4 MES I 1 405 9 MES MES . 
GB 3 3CN J 1 501 501 3CN PPA . 
HB 2 BRJ J 1 502 401 BRJ BRJ . 
IB 2 BRJ J 1 503 402 BRJ BRJ . 
JB 2 BRJ J 1 504 403 BRJ BRJ . 
KB 4 MES J 1 505 10 MES MES . 
LB 5 CL J 1 506 2 CL CL . 
MB 6 HOH C 1 501 2 HOH HOH . 
NB 6 HOH I 1 501 3 HOH HOH . 
OB 6 HOH J 1 601 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CA 3CN . . . GA 3 63.84 90.857 281.785 1 114.19 ? CA 3CN 501 E 1 
HETATM 2 C CB 3CN . . . GA 3 64.307 91.843 280.731 1 95 ? CB 3CN 501 E 1 
HETATM 3 C CC 3CN . . . GA 3 65.145 91.067 279.721 1 91.96 ? CC 3CN 501 E 1 
HETATM 4 N ND 3CN . . . GA 3 65.811 92.015 278.736 1 102.1 ? ND 3CN 501 E 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    47 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#