data_5SY6 # _model_server_result.job_id TIHakhx4nyWrs5rEkBYA7A _model_server_result.datetime_utc '2024-11-14 05:38:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sy6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5SY6 # _exptl.entry_id 5SY6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-1,4-DITHIOBUTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5SY6 _cell.length_a 75.227 _cell.length_b 75.227 _cell.length_c 75.227 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SY6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_553 x-y,-y,-z-4/3 1 0 0 0 -1 0 0 0 -1 0 0 -100.302667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 56 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 53 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 56 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 53 _struct_conn.ptnr2_symmetry 5_553 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id A _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.991 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTT _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-1,4-DITHIOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,4-DITHIOTHREITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTT sing 83 n n S1 HS1 DTT sing 84 n n C1 C2 DTT sing 85 n n C1 H11 DTT sing 86 n n C1 H12 DTT sing 87 n n C2 O2 DTT sing 88 n n C2 C3 DTT sing 89 n n C2 H2 DTT sing 90 n n O2 HO2 DTT sing 91 n n C3 O3 DTT sing 92 n n C3 C4 DTT sing 93 n n C3 H3 DTT sing 94 n n O3 HO3 DTT sing 95 n n C4 S4 DTT sing 96 n n C4 H41 DTT sing 97 n n C4 H42 DTT sing 98 n n S4 HS2 DTT sing 99 n n # _atom_sites.entry_id 5SY6 _atom_sites.fract_transf_matrix[1][1] 0.013293 _atom_sites.fract_transf_matrix[1][2] 0.007675 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01535 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013293 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DTT A 1 201 1 DTT DTT . C 3 HOH A 1 301 169 HOH HOH . C 3 HOH A 2 302 184 HOH HOH . C 3 HOH A 3 303 181 HOH HOH . C 3 HOH A 4 304 102 HOH HOH . C 3 HOH A 5 305 210 HOH HOH . C 3 HOH A 6 306 58 HOH HOH . C 3 HOH A 7 307 33 HOH HOH . C 3 HOH A 8 308 232 HOH HOH . C 3 HOH A 9 309 176 HOH HOH . C 3 HOH A 10 310 121 HOH HOH . C 3 HOH A 11 311 85 HOH HOH . C 3 HOH A 12 312 62 HOH HOH . C 3 HOH A 13 313 244 HOH HOH . C 3 HOH A 14 314 250 HOH HOH . C 3 HOH A 15 315 189 HOH HOH . C 3 HOH A 16 316 179 HOH HOH . C 3 HOH A 17 317 49 HOH HOH . C 3 HOH A 18 318 225 HOH HOH . C 3 HOH A 19 319 239 HOH HOH . C 3 HOH A 20 320 70 HOH HOH . C 3 HOH A 21 321 197 HOH HOH . C 3 HOH A 22 322 170 HOH HOH . C 3 HOH A 23 323 172 HOH HOH . C 3 HOH A 24 324 44 HOH HOH . C 3 HOH A 25 325 51 HOH HOH . C 3 HOH A 26 326 205 HOH HOH . C 3 HOH A 27 327 57 HOH HOH . C 3 HOH A 28 328 204 HOH HOH . C 3 HOH A 29 329 27 HOH HOH . C 3 HOH A 30 330 65 HOH HOH . C 3 HOH A 31 331 56 HOH HOH . C 3 HOH A 32 332 133 HOH HOH . C 3 HOH A 33 333 41 HOH HOH . C 3 HOH A 34 334 149 HOH HOH . C 3 HOH A 35 335 77 HOH HOH . C 3 HOH A 36 336 144 HOH HOH . C 3 HOH A 37 337 147 HOH HOH . C 3 HOH A 38 338 162 HOH HOH . C 3 HOH A 39 339 69 HOH HOH . C 3 HOH A 40 340 79 HOH HOH . C 3 HOH A 41 341 73 HOH HOH . C 3 HOH A 42 342 174 HOH HOH . C 3 HOH A 43 343 30 HOH HOH . C 3 HOH A 44 344 88 HOH HOH . C 3 HOH A 45 345 165 HOH HOH . C 3 HOH A 46 346 177 HOH HOH . C 3 HOH A 47 347 17 HOH HOH . C 3 HOH A 48 348 71 HOH HOH . C 3 HOH A 49 349 95 HOH HOH . C 3 HOH A 50 350 236 HOH HOH . C 3 HOH A 51 351 26 HOH HOH . C 3 HOH A 52 352 16 HOH HOH . C 3 HOH A 53 353 11 HOH HOH . C 3 HOH A 54 354 48 HOH HOH . C 3 HOH A 55 355 32 HOH HOH . C 3 HOH A 56 356 76 HOH HOH . C 3 HOH A 57 357 40 HOH HOH . C 3 HOH A 58 358 143 HOH HOH . C 3 HOH A 59 359 221 HOH HOH . C 3 HOH A 60 360 175 HOH HOH . C 3 HOH A 61 361 34 HOH HOH . C 3 HOH A 62 362 135 HOH HOH . C 3 HOH A 63 363 20 HOH HOH . C 3 HOH A 64 364 201 HOH HOH . C 3 HOH A 65 365 6 HOH HOH . C 3 HOH A 66 366 13 HOH HOH . C 3 HOH A 67 367 14 HOH HOH . C 3 HOH A 68 368 28 HOH HOH . C 3 HOH A 69 369 31 HOH HOH . C 3 HOH A 70 370 242 HOH HOH . C 3 HOH A 71 371 243 HOH HOH . C 3 HOH A 72 372 59 HOH HOH . C 3 HOH A 73 373 37 HOH HOH . C 3 HOH A 74 374 35 HOH HOH . C 3 HOH A 75 375 137 HOH HOH . C 3 HOH A 76 376 80 HOH HOH . C 3 HOH A 77 377 218 HOH HOH . C 3 HOH A 78 378 166 HOH HOH . C 3 HOH A 79 379 12 HOH HOH . C 3 HOH A 80 380 19 HOH HOH . C 3 HOH A 81 381 15 HOH HOH . C 3 HOH A 82 382 50 HOH HOH . C 3 HOH A 83 383 5 HOH HOH . C 3 HOH A 84 384 8 HOH HOH . C 3 HOH A 85 385 145 HOH HOH . C 3 HOH A 86 386 3 HOH HOH . C 3 HOH A 87 387 229 HOH HOH . C 3 HOH A 88 388 75 HOH HOH . C 3 HOH A 89 389 1 HOH HOH . C 3 HOH A 90 390 68 HOH HOH . C 3 HOH A 91 391 7 HOH HOH . C 3 HOH A 92 392 235 HOH HOH . C 3 HOH A 93 393 23 HOH HOH . C 3 HOH A 94 394 36 HOH HOH . C 3 HOH A 95 395 21 HOH HOH . C 3 HOH A 96 396 53 HOH HOH . C 3 HOH A 97 397 10 HOH HOH . C 3 HOH A 98 398 47 HOH HOH . C 3 HOH A 99 399 173 HOH HOH . C 3 HOH A 100 400 18 HOH HOH . C 3 HOH A 101 401 2 HOH HOH . C 3 HOH A 102 402 142 HOH HOH . C 3 HOH A 103 403 97 HOH HOH . C 3 HOH A 104 404 45 HOH HOH . C 3 HOH A 105 405 9 HOH HOH . C 3 HOH A 106 406 4 HOH HOH . C 3 HOH A 107 407 164 HOH HOH . C 3 HOH A 108 408 63 HOH HOH . C 3 HOH A 109 409 156 HOH HOH . C 3 HOH A 110 410 241 HOH HOH . C 3 HOH A 111 411 91 HOH HOH . C 3 HOH A 112 412 171 HOH HOH . C 3 HOH A 113 413 24 HOH HOH . C 3 HOH A 114 414 46 HOH HOH . C 3 HOH A 115 415 94 HOH HOH . C 3 HOH A 116 416 39 HOH HOH . C 3 HOH A 117 417 67 HOH HOH . C 3 HOH A 118 418 138 HOH HOH . C 3 HOH A 119 419 72 HOH HOH . C 3 HOH A 120 420 128 HOH HOH . C 3 HOH A 121 421 126 HOH HOH . C 3 HOH A 122 422 93 HOH HOH . C 3 HOH A 123 423 125 HOH HOH . C 3 HOH A 124 424 38 HOH HOH . C 3 HOH A 125 425 115 HOH HOH . C 3 HOH A 126 426 55 HOH HOH . C 3 HOH A 127 427 180 HOH HOH . C 3 HOH A 128 428 226 HOH HOH . C 3 HOH A 129 429 60 HOH HOH . C 3 HOH A 130 430 154 HOH HOH . C 3 HOH A 131 431 22 HOH HOH . C 3 HOH A 132 432 152 HOH HOH . C 3 HOH A 133 433 211 HOH HOH . C 3 HOH A 134 434 74 HOH HOH . C 3 HOH A 135 435 43 HOH HOH . C 3 HOH A 136 436 84 HOH HOH . C 3 HOH A 137 437 90 HOH HOH . C 3 HOH A 138 438 64 HOH HOH . C 3 HOH A 139 439 219 HOH HOH . C 3 HOH A 140 440 130 HOH HOH . C 3 HOH A 141 441 86 HOH HOH . C 3 HOH A 142 442 81 HOH HOH . C 3 HOH A 143 443 159 HOH HOH . C 3 HOH A 144 444 155 HOH HOH . C 3 HOH A 145 445 54 HOH HOH . C 3 HOH A 146 446 254 HOH HOH . C 3 HOH A 147 447 148 HOH HOH . C 3 HOH A 148 448 151 HOH HOH . C 3 HOH A 149 449 240 HOH HOH . C 3 HOH A 150 450 158 HOH HOH . C 3 HOH A 151 451 150 HOH HOH . C 3 HOH A 152 452 196 HOH HOH . C 3 HOH A 153 453 256 HOH HOH . C 3 HOH A 154 454 52 HOH HOH . C 3 HOH A 155 455 183 HOH HOH . C 3 HOH A 156 456 187 HOH HOH . C 3 HOH A 157 457 199 HOH HOH . C 3 HOH A 158 458 61 HOH HOH . C 3 HOH A 159 459 153 HOH HOH . C 3 HOH A 160 460 96 HOH HOH . C 3 HOH A 161 461 25 HOH HOH . C 3 HOH A 162 462 29 HOH HOH . C 3 HOH A 163 463 161 HOH HOH . C 3 HOH A 164 464 157 HOH HOH . C 3 HOH A 165 465 92 HOH HOH . C 3 HOH A 166 466 127 HOH HOH . C 3 HOH A 167 467 82 HOH HOH . C 3 HOH A 168 468 160 HOH HOH . C 3 HOH A 169 469 190 HOH HOH . C 3 HOH A 170 470 98 HOH HOH . C 3 HOH A 171 471 118 HOH HOH . C 3 HOH A 172 472 182 HOH HOH . C 3 HOH A 173 473 163 HOH HOH . C 3 HOH A 174 474 66 HOH HOH . C 3 HOH A 175 475 167 HOH HOH . C 3 HOH A 176 476 131 HOH HOH . C 3 HOH A 177 477 132 HOH HOH . C 3 HOH A 178 478 216 HOH HOH . C 3 HOH A 179 479 193 HOH HOH . C 3 HOH A 180 480 129 HOH HOH . C 3 HOH A 181 481 141 HOH HOH . C 3 HOH A 182 482 122 HOH HOH . C 3 HOH A 183 483 255 HOH HOH . C 3 HOH A 184 484 78 HOH HOH . C 3 HOH A 185 485 214 HOH HOH . C 3 HOH A 186 486 42 HOH HOH . C 3 HOH A 187 487 120 HOH HOH . C 3 HOH A 188 488 200 HOH HOH . C 3 HOH A 189 489 249 HOH HOH . C 3 HOH A 190 490 191 HOH HOH . C 3 HOH A 191 491 119 HOH HOH . C 3 HOH A 192 492 247 HOH HOH . C 3 HOH A 193 493 89 HOH HOH . C 3 HOH A 194 494 107 HOH HOH . C 3 HOH A 195 495 186 HOH HOH . C 3 HOH A 196 496 123 HOH HOH . C 3 HOH A 197 497 212 HOH HOH . C 3 HOH A 198 498 116 HOH HOH . C 3 HOH A 199 499 185 HOH HOH . C 3 HOH A 200 500 209 HOH HOH . C 3 HOH A 201 501 146 HOH HOH . C 3 HOH A 202 502 252 HOH HOH . C 3 HOH A 203 503 109 HOH HOH . C 3 HOH A 204 504 188 HOH HOH . C 3 HOH A 205 505 114 HOH HOH . C 3 HOH A 206 506 245 HOH HOH . C 3 HOH A 207 507 237 HOH HOH . C 3 HOH A 208 508 248 HOH HOH . C 3 HOH A 209 509 139 HOH HOH . C 3 HOH A 210 510 178 HOH HOH . C 3 HOH A 211 511 224 HOH HOH . C 3 HOH A 212 512 198 HOH HOH . C 3 HOH A 213 513 202 HOH HOH . C 3 HOH A 214 514 104 HOH HOH . C 3 HOH A 215 515 136 HOH HOH . C 3 HOH A 216 516 168 HOH HOH . C 3 HOH A 217 517 140 HOH HOH . C 3 HOH A 218 518 113 HOH HOH . C 3 HOH A 219 519 251 HOH HOH . C 3 HOH A 220 520 112 HOH HOH . C 3 HOH A 221 521 101 HOH HOH . C 3 HOH A 222 522 108 HOH HOH . C 3 HOH A 223 523 203 HOH HOH . C 3 HOH A 224 524 207 HOH HOH . C 3 HOH A 225 525 213 HOH HOH . C 3 HOH A 226 526 110 HOH HOH . C 3 HOH A 227 527 195 HOH HOH . C 3 HOH A 228 528 246 HOH HOH . C 3 HOH A 229 529 228 HOH HOH . C 3 HOH A 230 530 99 HOH HOH . C 3 HOH A 231 531 215 HOH HOH . C 3 HOH A 232 532 105 HOH HOH . C 3 HOH A 233 533 103 HOH HOH . C 3 HOH A 234 534 234 HOH HOH . C 3 HOH A 235 535 106 HOH HOH . C 3 HOH A 236 536 227 HOH HOH . C 3 HOH A 237 537 223 HOH HOH . C 3 HOH A 238 538 83 HOH HOH . C 3 HOH A 239 539 117 HOH HOH . C 3 HOH A 240 540 87 HOH HOH . C 3 HOH A 241 541 208 HOH HOH . C 3 HOH A 242 542 192 HOH HOH . C 3 HOH A 243 543 206 HOH HOH . C 3 HOH A 244 544 230 HOH HOH . C 3 HOH A 245 545 100 HOH HOH . C 3 HOH A 246 546 238 HOH HOH . C 3 HOH A 247 547 217 HOH HOH . C 3 HOH A 248 548 124 HOH HOH . C 3 HOH A 249 549 194 HOH HOH . C 3 HOH A 250 550 222 HOH HOH . C 3 HOH A 251 551 111 HOH HOH . C 3 HOH A 252 552 231 HOH HOH . C 3 HOH A 253 553 253 HOH HOH . C 3 HOH A 254 554 233 HOH HOH . C 3 HOH A 255 555 220 HOH HOH . C 3 HOH A 256 556 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTT . A . B 2 37.214 -19.416 -54.386 0.75 19.19 ? S1 DTT 201 A 1 HETATM 2 C C1 DTT . A . B 2 37.712 -19.391 -52.647 0.75 19.41 ? C1 DTT 201 A 1 HETATM 3 C C2 DTT . A . B 2 37.806 -20.804 -52.038 0.75 19.04 ? C2 DTT 201 A 1 HETATM 4 O O2 DTT . A . B 2 36.52 -21.478 -52.073 0.75 21.17 ? O2 DTT 201 A 1 HETATM 5 C C3 DTT . A . B 2 38.397 -20.706 -50.635 0.75 20.83 ? C3 DTT 201 A 1 HETATM 6 O O3 DTT . A . B 2 37.543 -20.177 -49.571 0.75 22.69 ? O3 DTT 201 A 1 HETATM 7 C C4 DTT . A . B 2 38.799 -22.071 -50.143 0.75 25.05 ? C4 DTT 201 A 1 HETATM 8 S S4 DTT . A . B 2 39.727 -21.934 -48.595 0.75 26.29 ? S4 DTT 201 A 1 # _model_server_stats.io_time_ms 102 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 218 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #