data_5SYA # _model_server_result.job_id Yn3-T4t9jtt_Gx9ddolzRg _model_server_result.datetime_utc '2024-11-14 16:52:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sya # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5SYA # _exptl.entry_id 5SYA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5SYA _cell.length_a 74.969 _cell.length_b 74.969 _cell.length_c 75.336 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SYA _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_677 x-y+1,-y+2,-z+8/3 1 0 0 0 -1 0 0 0 -1 0 129.850117 200.896 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 108 A ILE 105 1_555 A N CSD 109 A CSD 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale2 A C CSD 109 A CSD 106 1_555 A N ALA 110 A ALA 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 98 n n C1 C2 EDO sing 99 n n C1 H11 EDO sing 100 n n C1 H12 EDO sing 101 n n O1 HO1 EDO sing 102 n n C2 O2 EDO sing 103 n n C2 H21 EDO sing 104 n n C2 H22 EDO sing 105 n n O2 HO2 EDO sing 106 n n # _atom_sites.entry_id 5SYA _atom_sites.fract_transf_matrix[1][1] 0.013339 _atom_sites.fract_transf_matrix[1][2] 0.007701 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013274 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 2 EDO EDO . C 2 EDO A 1 202 3 EDO EDO . D 3 HOH A 1 301 169 HOH HOH . D 3 HOH A 2 302 194 HOH HOH . D 3 HOH A 3 303 81 HOH HOH . D 3 HOH A 4 304 129 HOH HOH . D 3 HOH A 5 305 139 HOH HOH . D 3 HOH A 6 306 105 HOH HOH . D 3 HOH A 7 307 23 HOH HOH . D 3 HOH A 8 308 8 HOH HOH . D 3 HOH A 9 309 83 HOH HOH . D 3 HOH A 10 310 115 HOH HOH . D 3 HOH A 11 311 87 HOH HOH . D 3 HOH A 12 312 209 HOH HOH . D 3 HOH A 13 313 178 HOH HOH . D 3 HOH A 14 314 188 HOH HOH . D 3 HOH A 15 315 145 HOH HOH . D 3 HOH A 16 316 199 HOH HOH . D 3 HOH A 17 317 41 HOH HOH . D 3 HOH A 18 318 71 HOH HOH . D 3 HOH A 19 319 138 HOH HOH . D 3 HOH A 20 320 114 HOH HOH . D 3 HOH A 21 321 19 HOH HOH . D 3 HOH A 22 322 58 HOH HOH . D 3 HOH A 23 323 22 HOH HOH . D 3 HOH A 24 324 40 HOH HOH . D 3 HOH A 25 325 142 HOH HOH . D 3 HOH A 26 326 50 HOH HOH . D 3 HOH A 27 327 32 HOH HOH . D 3 HOH A 28 328 95 HOH HOH . D 3 HOH A 29 329 189 HOH HOH . D 3 HOH A 30 330 68 HOH HOH . D 3 HOH A 31 331 27 HOH HOH . D 3 HOH A 32 332 109 HOH HOH . D 3 HOH A 33 333 36 HOH HOH . D 3 HOH A 34 334 79 HOH HOH . D 3 HOH A 35 335 214 HOH HOH . D 3 HOH A 36 336 60 HOH HOH . D 3 HOH A 37 337 157 HOH HOH . D 3 HOH A 38 338 20 HOH HOH . D 3 HOH A 39 339 26 HOH HOH . D 3 HOH A 40 340 162 HOH HOH . D 3 HOH A 41 341 28 HOH HOH . D 3 HOH A 42 342 160 HOH HOH . D 3 HOH A 43 343 11 HOH HOH . D 3 HOH A 44 344 47 HOH HOH . D 3 HOH A 45 345 97 HOH HOH . D 3 HOH A 46 346 84 HOH HOH . D 3 HOH A 47 347 136 HOH HOH . D 3 HOH A 48 348 6 HOH HOH . D 3 HOH A 49 349 220 HOH HOH . D 3 HOH A 50 350 82 HOH HOH . D 3 HOH A 51 351 99 HOH HOH . D 3 HOH A 52 352 163 HOH HOH . D 3 HOH A 53 353 74 HOH HOH . D 3 HOH A 54 354 131 HOH HOH . D 3 HOH A 55 355 76 HOH HOH . D 3 HOH A 56 356 101 HOH HOH . D 3 HOH A 57 357 200 HOH HOH . D 3 HOH A 58 358 122 HOH HOH . D 3 HOH A 59 359 94 HOH HOH . D 3 HOH A 60 360 197 HOH HOH . D 3 HOH A 61 361 228 HOH HOH . D 3 HOH A 62 362 13 HOH HOH . D 3 HOH A 63 363 30 HOH HOH . D 3 HOH A 64 364 212 HOH HOH . D 3 HOH A 65 365 151 HOH HOH . D 3 HOH A 66 366 12 HOH HOH . D 3 HOH A 67 367 206 HOH HOH . D 3 HOH A 68 368 116 HOH HOH . D 3 HOH A 69 369 78 HOH HOH . D 3 HOH A 70 370 1 HOH HOH . D 3 HOH A 71 371 34 HOH HOH . D 3 HOH A 72 372 104 HOH HOH . D 3 HOH A 73 373 140 HOH HOH . D 3 HOH A 74 374 48 HOH HOH . D 3 HOH A 75 375 3 HOH HOH . D 3 HOH A 76 376 123 HOH HOH . D 3 HOH A 77 377 62 HOH HOH . D 3 HOH A 78 378 92 HOH HOH . D 3 HOH A 79 379 176 HOH HOH . D 3 HOH A 80 380 117 HOH HOH . D 3 HOH A 81 381 159 HOH HOH . D 3 HOH A 82 382 37 HOH HOH . D 3 HOH A 83 383 89 HOH HOH . D 3 HOH A 84 384 15 HOH HOH . D 3 HOH A 85 385 4 HOH HOH . D 3 HOH A 86 386 153 HOH HOH . D 3 HOH A 87 387 77 HOH HOH . D 3 HOH A 88 388 218 HOH HOH . D 3 HOH A 89 389 5 HOH HOH . D 3 HOH A 90 390 158 HOH HOH . D 3 HOH A 91 391 168 HOH HOH . D 3 HOH A 92 392 126 HOH HOH . D 3 HOH A 93 393 9 HOH HOH . D 3 HOH A 94 394 64 HOH HOH . D 3 HOH A 95 395 132 HOH HOH . D 3 HOH A 96 396 63 HOH HOH . D 3 HOH A 97 397 75 HOH HOH . D 3 HOH A 98 398 73 HOH HOH . D 3 HOH A 99 399 161 HOH HOH . D 3 HOH A 100 400 211 HOH HOH . D 3 HOH A 101 401 16 HOH HOH . D 3 HOH A 102 402 210 HOH HOH . D 3 HOH A 103 403 24 HOH HOH . D 3 HOH A 104 404 166 HOH HOH . D 3 HOH A 105 405 49 HOH HOH . D 3 HOH A 106 406 170 HOH HOH . D 3 HOH A 107 407 33 HOH HOH . D 3 HOH A 108 408 14 HOH HOH . D 3 HOH A 109 409 17 HOH HOH . D 3 HOH A 110 410 86 HOH HOH . D 3 HOH A 111 411 31 HOH HOH . D 3 HOH A 112 412 7 HOH HOH . D 3 HOH A 113 413 125 HOH HOH . D 3 HOH A 114 414 2 HOH HOH . D 3 HOH A 115 415 124 HOH HOH . D 3 HOH A 116 416 35 HOH HOH . D 3 HOH A 117 417 143 HOH HOH . D 3 HOH A 118 418 69 HOH HOH . D 3 HOH A 119 419 88 HOH HOH . D 3 HOH A 120 420 65 HOH HOH . D 3 HOH A 121 421 67 HOH HOH . D 3 HOH A 122 422 56 HOH HOH . D 3 HOH A 123 423 10 HOH HOH . D 3 HOH A 124 424 201 HOH HOH . D 3 HOH A 125 425 223 HOH HOH . D 3 HOH A 126 426 221 HOH HOH . D 3 HOH A 127 427 154 HOH HOH . D 3 HOH A 128 428 85 HOH HOH . D 3 HOH A 129 429 43 HOH HOH . D 3 HOH A 130 430 208 HOH HOH . D 3 HOH A 131 431 25 HOH HOH . D 3 HOH A 132 432 134 HOH HOH . D 3 HOH A 133 433 106 HOH HOH . D 3 HOH A 134 434 59 HOH HOH . D 3 HOH A 135 435 156 HOH HOH . D 3 HOH A 136 436 174 HOH HOH . D 3 HOH A 137 437 100 HOH HOH . D 3 HOH A 138 438 113 HOH HOH . D 3 HOH A 139 439 202 HOH HOH . D 3 HOH A 140 440 224 HOH HOH . D 3 HOH A 141 441 135 HOH HOH . D 3 HOH A 142 442 61 HOH HOH . D 3 HOH A 143 443 196 HOH HOH . D 3 HOH A 144 444 57 HOH HOH . D 3 HOH A 145 445 96 HOH HOH . D 3 HOH A 146 446 90 HOH HOH . D 3 HOH A 147 447 128 HOH HOH . D 3 HOH A 148 448 21 HOH HOH . D 3 HOH A 149 449 173 HOH HOH . D 3 HOH A 150 450 52 HOH HOH . D 3 HOH A 151 451 181 HOH HOH . D 3 HOH A 152 452 215 HOH HOH . D 3 HOH A 153 453 112 HOH HOH . D 3 HOH A 154 454 171 HOH HOH . D 3 HOH A 155 455 110 HOH HOH . D 3 HOH A 156 456 193 HOH HOH . D 3 HOH A 157 457 45 HOH HOH . D 3 HOH A 158 458 137 HOH HOH . D 3 HOH A 159 459 119 HOH HOH . D 3 HOH A 160 460 190 HOH HOH . D 3 HOH A 161 461 184 HOH HOH . D 3 HOH A 162 462 72 HOH HOH . D 3 HOH A 163 463 186 HOH HOH . D 3 HOH A 164 464 207 HOH HOH . D 3 HOH A 165 465 133 HOH HOH . D 3 HOH A 166 466 180 HOH HOH . D 3 HOH A 167 467 80 HOH HOH . D 3 HOH A 168 468 46 HOH HOH . D 3 HOH A 169 469 44 HOH HOH . D 3 HOH A 170 470 66 HOH HOH . D 3 HOH A 171 471 185 HOH HOH . D 3 HOH A 172 472 172 HOH HOH . D 3 HOH A 173 473 217 HOH HOH . D 3 HOH A 174 474 177 HOH HOH . D 3 HOH A 175 475 187 HOH HOH . D 3 HOH A 176 476 219 HOH HOH . D 3 HOH A 177 477 144 HOH HOH . D 3 HOH A 178 478 213 HOH HOH . D 3 HOH A 179 479 183 HOH HOH . D 3 HOH A 180 480 111 HOH HOH . D 3 HOH A 181 481 204 HOH HOH . D 3 HOH A 182 482 38 HOH HOH . D 3 HOH A 183 483 141 HOH HOH . D 3 HOH A 184 484 70 HOH HOH . D 3 HOH A 185 485 148 HOH HOH . D 3 HOH A 186 486 42 HOH HOH . D 3 HOH A 187 487 146 HOH HOH . D 3 HOH A 188 488 225 HOH HOH . D 3 HOH A 189 489 216 HOH HOH . D 3 HOH A 190 490 107 HOH HOH . D 3 HOH A 191 491 165 HOH HOH . D 3 HOH A 192 492 98 HOH HOH . D 3 HOH A 193 493 102 HOH HOH . D 3 HOH A 194 494 227 HOH HOH . D 3 HOH A 195 495 130 HOH HOH . D 3 HOH A 196 496 164 HOH HOH . D 3 HOH A 197 497 150 HOH HOH . D 3 HOH A 198 498 93 HOH HOH . D 3 HOH A 199 499 179 HOH HOH . D 3 HOH A 200 500 91 HOH HOH . D 3 HOH A 201 501 53 HOH HOH . D 3 HOH A 202 502 120 HOH HOH . D 3 HOH A 203 503 195 HOH HOH . D 3 HOH A 204 504 29 HOH HOH . D 3 HOH A 205 505 205 HOH HOH . D 3 HOH A 206 506 39 HOH HOH . D 3 HOH A 207 507 191 HOH HOH . D 3 HOH A 208 508 226 HOH HOH . D 3 HOH A 209 509 192 HOH HOH . D 3 HOH A 210 510 121 HOH HOH . D 3 HOH A 211 511 54 HOH HOH . D 3 HOH A 212 512 152 HOH HOH . D 3 HOH A 213 513 155 HOH HOH . D 3 HOH A 214 514 118 HOH HOH . D 3 HOH A 215 515 147 HOH HOH . D 3 HOH A 216 516 198 HOH HOH . D 3 HOH A 217 517 51 HOH HOH . D 3 HOH A 218 518 175 HOH HOH . D 3 HOH A 219 519 103 HOH HOH . D 3 HOH A 220 520 222 HOH HOH . D 3 HOH A 221 521 230 HOH HOH . D 3 HOH A 222 522 167 HOH HOH . D 3 HOH A 223 523 55 HOH HOH . D 3 HOH A 224 524 149 HOH HOH . D 3 HOH A 225 525 18 HOH HOH . D 3 HOH A 226 526 203 HOH HOH . D 3 HOH A 227 527 182 HOH HOH . D 3 HOH A 228 528 108 HOH HOH . D 3 HOH A 229 529 127 HOH HOH . D 3 HOH A 230 530 229 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 77.57 52.064 102.973 1 14.67 ? C1 EDO 201 A 1 HETATM 2 O O1 EDO . . . B 2 76.838 52.106 104.084 1 14.94 ? O1 EDO 201 A 1 HETATM 3 C C2 EDO . . . B 2 76.635 52.024 101.778 1 18.6 ? C2 EDO 201 A 1 HETATM 4 O O2 EDO . . . B 2 75.827 53.231 101.694 1 13.37 ? O2 EDO 201 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #