data_5SYB
#
_model_server_result.job_id            HkJlSTwA7fGBPzzfH52rHw 
_model_server_result.datetime_utc      '2025-07-02 23:05:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5syb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":205}' 
#
_entry.id    5SYB 
#
_exptl.entry_id    5SYB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5SYB 
_cell.length_a            82.116 
_cell.length_b            82.116 
_cell.length_c            82.116 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5SYB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        198 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,M 1 1 
B,H,I,J,K,L,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 K N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 14 A CYS 11 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc2 A SG CYS 26 A CYS 23 1_555 E ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc3 A SG CYS 29 A CYS 26 1_555 E ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc4 A SG CYS 33 A CYS 30 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc5 A SG CYS 36 A CYS 33 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc6 A SG CYS 49 A CYS 46 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
metalc ? metalc7 A SG CYS 52 A CYS 49 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc8 A SG CYS 61 A CYS 58 1_555 E ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc9 A SG CYS 64 A CYS 61 1_555 E ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc10 A SG CYS 75 A CYS 72 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc11 A SG CYS 78 A CYS 75 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc12 A SG CYS 88 A CYS 85 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc13 B SG CYS 14 B CYS 11 1_555 H ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc14 B SG CYS 26 B CYS 23 1_555 J ZN ZN . B ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc15 B SG CYS 29 B CYS 26 1_555 J ZN ZN . B ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc16 B SG CYS 33 B CYS 30 1_555 I ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc17 B SG CYS 36 B CYS 33 1_555 I ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc18 B SG CYS 49 B CYS 46 1_555 H ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc19 B SG CYS 52 B CYS 49 1_555 H ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc20 B SG CYS 61 B CYS 58 1_555 J ZN ZN . B ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc21 B SG CYS 64 B CYS 61 1_555 J ZN ZN . B ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? 
metalc ? metalc22 B SG CYS 75 B CYS 72 1_555 I ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc23 B SG CYS 78 B CYS 75 1_555 I ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc24 B SG CYS 88 B CYS 85 1_555 H ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5SYB 
_atom_sites.fract_transf_matrix[1][1]    0.012178 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012178 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012178 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 201 1 ZN ZN . 
D 2 ZN A 1 202 3 ZN ZN . 
E 2 ZN A 1 203 4 ZN ZN . 
F 3 EDO A 1 204 3 EDO EDO . 
G 3 EDO A 1 205 4 EDO EDO . 
H 2 ZN B 1 201 2 ZN ZN . 
I 2 ZN B 1 202 5 ZN ZN . 
J 2 ZN B 1 203 6 ZN ZN . 
K 3 EDO B 1 204 1 EDO EDO . 
L 3 EDO B 1 205 5 EDO EDO . 
M 4 HOH A 1 301 67 HOH HOH . 
M 4 HOH A 2 302 74 HOH HOH . 
M 4 HOH A 3 303 99 HOH HOH . 
M 4 HOH A 4 304 96 HOH HOH . 
M 4 HOH A 5 305 79 HOH HOH . 
M 4 HOH A 6 306 46 HOH HOH . 
M 4 HOH A 7 307 82 HOH HOH . 
M 4 HOH A 8 308 30 HOH HOH . 
M 4 HOH A 9 309 57 HOH HOH . 
M 4 HOH A 10 310 69 HOH HOH . 
M 4 HOH A 11 311 28 HOH HOH . 
M 4 HOH A 12 312 13 HOH HOH . 
M 4 HOH A 13 313 42 HOH HOH . 
M 4 HOH A 14 314 62 HOH HOH . 
M 4 HOH A 15 315 3 HOH HOH . 
M 4 HOH A 16 316 70 HOH HOH . 
M 4 HOH A 17 317 58 HOH HOH . 
M 4 HOH A 18 318 8 HOH HOH . 
M 4 HOH A 19 319 83 HOH HOH . 
M 4 HOH A 20 320 95 HOH HOH . 
M 4 HOH A 21 321 77 HOH HOH . 
M 4 HOH A 22 322 60 HOH HOH . 
M 4 HOH A 23 323 87 HOH HOH . 
M 4 HOH A 24 324 33 HOH HOH . 
M 4 HOH A 25 325 47 HOH HOH . 
M 4 HOH A 26 326 4 HOH HOH . 
M 4 HOH A 27 327 78 HOH HOH . 
M 4 HOH A 28 328 17 HOH HOH . 
M 4 HOH A 29 329 31 HOH HOH . 
M 4 HOH A 30 330 49 HOH HOH . 
M 4 HOH A 31 331 14 HOH HOH . 
M 4 HOH A 32 332 80 HOH HOH . 
M 4 HOH A 33 333 21 HOH HOH . 
M 4 HOH A 34 334 81 HOH HOH . 
M 4 HOH A 35 335 92 HOH HOH . 
M 4 HOH A 36 336 19 HOH HOH . 
M 4 HOH A 37 337 5 HOH HOH . 
M 4 HOH A 38 338 34 HOH HOH . 
M 4 HOH A 39 339 86 HOH HOH . 
M 4 HOH A 40 340 40 HOH HOH . 
M 4 HOH A 41 341 10 HOH HOH . 
M 4 HOH A 42 342 43 HOH HOH . 
M 4 HOH A 43 343 59 HOH HOH . 
M 4 HOH A 44 344 16 HOH HOH . 
M 4 HOH A 45 345 61 HOH HOH . 
M 4 HOH A 46 346 101 HOH HOH . 
M 4 HOH A 47 347 66 HOH HOH . 
M 4 HOH A 48 348 100 HOH HOH . 
M 4 HOH A 49 349 91 HOH HOH . 
N 4 HOH B 1 301 48 HOH HOH . 
N 4 HOH B 2 302 103 HOH HOH . 
N 4 HOH B 3 303 85 HOH HOH . 
N 4 HOH B 4 304 35 HOH HOH . 
N 4 HOH B 5 305 50 HOH HOH . 
N 4 HOH B 6 306 104 HOH HOH . 
N 4 HOH B 7 307 52 HOH HOH . 
N 4 HOH B 8 308 88 HOH HOH . 
N 4 HOH B 9 309 54 HOH HOH . 
N 4 HOH B 10 310 41 HOH HOH . 
N 4 HOH B 11 311 71 HOH HOH . 
N 4 HOH B 12 312 12 HOH HOH . 
N 4 HOH B 13 313 18 HOH HOH . 
N 4 HOH B 14 314 27 HOH HOH . 
N 4 HOH B 15 315 37 HOH HOH . 
N 4 HOH B 16 316 44 HOH HOH . 
N 4 HOH B 17 317 64 HOH HOH . 
N 4 HOH B 18 318 25 HOH HOH . 
N 4 HOH B 19 319 38 HOH HOH . 
N 4 HOH B 20 320 11 HOH HOH . 
N 4 HOH B 21 321 22 HOH HOH . 
N 4 HOH B 22 322 89 HOH HOH . 
N 4 HOH B 23 323 73 HOH HOH . 
N 4 HOH B 24 324 39 HOH HOH . 
N 4 HOH B 25 325 24 HOH HOH . 
N 4 HOH B 26 326 97 HOH HOH . 
N 4 HOH B 27 327 65 HOH HOH . 
N 4 HOH B 28 328 56 HOH HOH . 
N 4 HOH B 29 329 36 HOH HOH . 
N 4 HOH B 30 330 20 HOH HOH . 
N 4 HOH B 31 331 84 HOH HOH . 
N 4 HOH B 32 332 75 HOH HOH . 
N 4 HOH B 33 333 15 HOH HOH . 
N 4 HOH B 34 334 9 HOH HOH . 
N 4 HOH B 35 335 26 HOH HOH . 
N 4 HOH B 36 336 72 HOH HOH . 
N 4 HOH B 37 337 98 HOH HOH . 
N 4 HOH B 38 338 76 HOH HOH . 
N 4 HOH B 39 339 68 HOH HOH . 
N 4 HOH B 40 340 51 HOH HOH . 
N 4 HOH B 41 341 63 HOH HOH . 
N 4 HOH B 42 342 29 HOH HOH . 
N 4 HOH B 43 343 23 HOH HOH . 
N 4 HOH B 44 344 32 HOH HOH . 
N 4 HOH B 45 345 105 HOH HOH . 
N 4 HOH B 46 346 53 HOH HOH . 
N 4 HOH B 47 347 102 HOH HOH . 
N 4 HOH B 48 348 93 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 3 10.227 -13.458 4.45 1 36.68 ? C1 EDO 205 A 1 
HETATM 2 O O1 EDO . . . G 3 8.941 -12.956 4.143 1 40.73 ? O1 EDO 205 A 1 
HETATM 3 C C2 EDO . . . G 3 10.116 -14.967 4.326 1 42.46 ? C2 EDO 205 A 1 
HETATM 4 O O2 EDO . . . G 3 9.024 -15.416 5.131 1 38.67 ? O2 EDO 205 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#