data_5SYD # _model_server_result.job_id SloUMMxFBazddX9MU6pZGg _model_server_result.datetime_utc '2024-11-26 03:19:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5syd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 5SYD # _exptl.entry_id 5SYD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5SYD _cell.length_a 115.436 _cell.length_b 115.436 _cell.length_c 83.145 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SYD _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,G 1 1 B,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 96 1_555 A SG CYS 119 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 96 B CYS 96 1_555 B SG CYS 119 B CYS 119 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 B SG CYS 96 B CYS 96 1_555 B SG CYS 119 B CYS 119 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.027 ? metalc ? metalc1 A O MET 1 A MET 1 1_555 E CU CU . A CU 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc2 A ND1 HIS 6 A HIS 6 1_555 D CU CU . A CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc3 A NE2 HIS 43 A HIS 43 1_555 C CU CU . A CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc4 A SG CYS 72 A CYS 72 1_555 D CU CU . A CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc5 A ND1 HIS 77 A HIS 77 1_555 D CU CU . A CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc6 E CU CU . A CU 203 1_555 G O HOH . A HOH 312 5_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc7 E CU CU . A CU 203 1_555 B N MET 1 B MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc8 E CU CU . A CU 203 1_555 B N GLY 2 B GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc9 B ND1 HIS 6 B HIS 6 1_555 F CU CU . B CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc10 B SG CYS 72 B CYS 72 1_555 F CU CU . B CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc11 B ND1 HIS 77 B HIS 77 1_555 F CU CU . B CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5SYD _atom_sites.fract_transf_matrix[1][1] 0.008663 _atom_sites.fract_transf_matrix[1][2] 0.005001 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010003 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012027 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CU A 1 201 1 CU CU . D 2 CU A 1 202 4 CU CU . E 2 CU A 1 203 6 CU CU . F 2 CU B 1 201 2 CU CU . G 3 HOH A 1 301 49 HOH HOH . G 3 HOH A 2 302 51 HOH HOH . G 3 HOH A 3 303 36 HOH HOH . G 3 HOH A 4 304 53 HOH HOH . G 3 HOH A 5 305 19 HOH HOH . G 3 HOH A 6 306 3 HOH HOH . G 3 HOH A 7 307 23 HOH HOH . G 3 HOH A 8 308 1 HOH HOH . G 3 HOH A 9 309 2 HOH HOH . G 3 HOH A 10 310 26 HOH HOH . G 3 HOH A 11 311 17 HOH HOH . G 3 HOH A 12 312 35 HOH HOH . G 3 HOH A 13 313 43 HOH HOH . G 3 HOH A 14 314 38 HOH HOH . G 3 HOH A 15 315 33 HOH HOH . G 3 HOH A 16 316 30 HOH HOH . G 3 HOH A 17 317 12 HOH HOH . G 3 HOH A 18 318 25 HOH HOH . G 3 HOH A 19 319 6 HOH HOH . G 3 HOH A 20 320 39 HOH HOH . G 3 HOH A 21 321 29 HOH HOH . G 3 HOH A 22 322 45 HOH HOH . G 3 HOH A 23 323 16 HOH HOH . G 3 HOH A 24 324 52 HOH HOH . G 3 HOH A 25 325 31 HOH HOH . G 3 HOH A 26 326 4 HOH HOH . G 3 HOH A 27 327 24 HOH HOH . G 3 HOH A 28 328 41 HOH HOH . G 3 HOH A 29 329 32 HOH HOH . G 3 HOH A 30 330 47 HOH HOH . G 3 HOH A 31 331 37 HOH HOH . G 3 HOH A 32 332 10 HOH HOH . G 3 HOH A 33 333 42 HOH HOH . G 3 HOH A 34 334 48 HOH HOH . G 3 HOH A 35 335 44 HOH HOH . G 3 HOH A 36 336 34 HOH HOH . G 3 HOH A 37 337 22 HOH HOH . G 3 HOH A 38 338 46 HOH HOH . H 3 HOH B 1 301 9 HOH HOH . H 3 HOH B 2 302 50 HOH HOH . H 3 HOH B 3 303 5 HOH HOH . H 3 HOH B 4 304 20 HOH HOH . H 3 HOH B 5 305 8 HOH HOH . H 3 HOH B 6 306 15 HOH HOH . H 3 HOH B 7 307 54 HOH HOH . H 3 HOH B 8 308 14 HOH HOH . H 3 HOH B 9 309 55 HOH HOH . H 3 HOH B 10 310 7 HOH HOH . H 3 HOH B 11 311 13 HOH HOH . H 3 HOH B 12 312 27 HOH HOH . H 3 HOH B 13 313 28 HOH HOH . H 3 HOH B 14 314 18 HOH HOH . H 3 HOH B 15 315 40 HOH HOH . H 3 HOH B 16 316 21 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x -61.235 _atom_site.Cartn_y -9.186 _atom_site.Cartn_z -1.099 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 57.17 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 201 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #