data_5SYN # _model_server_result.job_id RX-69sWcfEs5iAcjxBCDkA _model_server_result.datetime_utc '2024-11-29 10:43:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5syn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 5SYN # _exptl.entry_id 5SYN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.3 _cell.angle_gamma 90 _cell.entry_id 5SYN _cell.length_a 78.21 _cell.length_b 79.79 _cell.length_c 138.61 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SYN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,O 1 1 B,G,H,I,J,K,P 2 1 C,L,M,Q 3 1 D,N,R 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 M N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 140 n n C1 C2 EDO sing 141 n n C1 H11 EDO sing 142 n n C1 H12 EDO sing 143 n n O1 HO1 EDO sing 144 n n C2 O2 EDO sing 145 n n C2 H21 EDO sing 146 n n C2 H22 EDO sing 147 n n O2 HO2 EDO sing 148 n n # _atom_sites.entry_id 5SYN _atom_sites.fract_transf_matrix[1][1] 0.012786 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000737 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 71T A 1 301 1 71T 349 . F 3 EDO A 1 302 5 EDO EDO . G 2 71T B 1 301 2 71T 349 . H 3 EDO B 1 302 2 EDO EDO . I 3 EDO B 1 303 4 EDO EDO . J 3 EDO B 1 304 6 EDO EDO . K 3 EDO B 1 305 7 EDO EDO . L 2 71T C 1 301 4 71T 349 . M 3 EDO C 1 302 1 EDO EDO . N 2 71T D 1 301 3 71T 349 . O 4 HOH A 1 401 103 HOH HOH . O 4 HOH A 2 402 294 HOH HOH . O 4 HOH A 3 403 45 HOH HOH . O 4 HOH A 4 404 309 HOH HOH . O 4 HOH A 5 405 280 HOH HOH . O 4 HOH A 6 406 277 HOH HOH . O 4 HOH A 7 407 120 HOH HOH . O 4 HOH A 8 408 279 HOH HOH . O 4 HOH A 9 409 144 HOH HOH . O 4 HOH A 10 410 146 HOH HOH . O 4 HOH A 11 411 276 HOH HOH . O 4 HOH A 12 412 161 HOH HOH . O 4 HOH A 13 413 296 HOH HOH . O 4 HOH A 14 414 298 HOH HOH . O 4 HOH A 15 415 37 HOH HOH . O 4 HOH A 16 416 295 HOH HOH . O 4 HOH A 17 417 177 HOH HOH . O 4 HOH A 18 418 106 HOH HOH . O 4 HOH A 19 419 98 HOH HOH . O 4 HOH A 20 420 119 HOH HOH . O 4 HOH A 21 421 57 HOH HOH . O 4 HOH A 22 422 252 HOH HOH . O 4 HOH A 23 423 215 HOH HOH . O 4 HOH A 24 424 283 HOH HOH . O 4 HOH A 25 425 266 HOH HOH . O 4 HOH A 26 426 88 HOH HOH . O 4 HOH A 27 427 51 HOH HOH . O 4 HOH A 28 428 115 HOH HOH . O 4 HOH A 29 429 262 HOH HOH . O 4 HOH A 30 430 228 HOH HOH . O 4 HOH A 31 431 273 HOH HOH . O 4 HOH A 32 432 11 HOH HOH . O 4 HOH A 33 433 49 HOH HOH . O 4 HOH A 34 434 290 HOH HOH . O 4 HOH A 35 435 305 HOH HOH . O 4 HOH A 36 436 1 HOH HOH . O 4 HOH A 37 437 75 HOH HOH . O 4 HOH A 38 438 269 HOH HOH . O 4 HOH A 39 439 126 HOH HOH . O 4 HOH A 40 440 286 HOH HOH . O 4 HOH A 41 441 221 HOH HOH . O 4 HOH A 42 442 87 HOH HOH . O 4 HOH A 43 443 227 HOH HOH . O 4 HOH A 44 444 33 HOH HOH . O 4 HOH A 45 445 171 HOH HOH . O 4 HOH A 46 446 65 HOH HOH . O 4 HOH A 47 447 147 HOH HOH . O 4 HOH A 48 448 307 HOH HOH . O 4 HOH A 49 449 247 HOH HOH . O 4 HOH A 50 450 34 HOH HOH . O 4 HOH A 51 451 9 HOH HOH . O 4 HOH A 52 452 259 HOH HOH . O 4 HOH A 53 453 60 HOH HOH . O 4 HOH A 54 454 10 HOH HOH . O 4 HOH A 55 455 39 HOH HOH . O 4 HOH A 56 456 265 HOH HOH . O 4 HOH A 57 457 100 HOH HOH . O 4 HOH A 58 458 288 HOH HOH . O 4 HOH A 59 459 2 HOH HOH . O 4 HOH A 60 460 110 HOH HOH . O 4 HOH A 61 461 95 HOH HOH . O 4 HOH A 62 462 232 HOH HOH . O 4 HOH A 63 463 73 HOH HOH . O 4 HOH A 64 464 91 HOH HOH . O 4 HOH A 65 465 3 HOH HOH . O 4 HOH A 66 466 151 HOH HOH . O 4 HOH A 67 467 176 HOH HOH . O 4 HOH A 68 468 63 HOH HOH . O 4 HOH A 69 469 136 HOH HOH . O 4 HOH A 70 470 116 HOH HOH . O 4 HOH A 71 471 168 HOH HOH . O 4 HOH A 72 472 79 HOH HOH . O 4 HOH A 73 473 111 HOH HOH . O 4 HOH A 74 474 224 HOH HOH . O 4 HOH A 75 475 138 HOH HOH . O 4 HOH A 76 476 251 HOH HOH . O 4 HOH A 77 477 191 HOH HOH . O 4 HOH A 78 478 93 HOH HOH . O 4 HOH A 79 479 205 HOH HOH . O 4 HOH A 80 480 188 HOH HOH . O 4 HOH A 81 481 197 HOH HOH . O 4 HOH A 82 482 113 HOH HOH . O 4 HOH A 83 483 198 HOH HOH . O 4 HOH A 84 484 158 HOH HOH . O 4 HOH A 85 485 29 HOH HOH . O 4 HOH A 86 486 84 HOH HOH . O 4 HOH A 87 487 310 HOH HOH . O 4 HOH A 88 488 58 HOH HOH . O 4 HOH A 89 489 122 HOH HOH . O 4 HOH A 90 490 102 HOH HOH . O 4 HOH A 91 491 249 HOH HOH . O 4 HOH A 92 492 128 HOH HOH . O 4 HOH A 93 493 78 HOH HOH . O 4 HOH A 94 494 239 HOH HOH . O 4 HOH A 95 495 308 HOH HOH . O 4 HOH A 96 496 248 HOH HOH . O 4 HOH A 97 497 169 HOH HOH . O 4 HOH A 98 498 240 HOH HOH . O 4 HOH A 99 499 292 HOH HOH . O 4 HOH A 100 500 226 HOH HOH . O 4 HOH A 101 501 77 HOH HOH . O 4 HOH A 102 502 244 HOH HOH . O 4 HOH A 103 503 204 HOH HOH . O 4 HOH A 104 504 172 HOH HOH . P 4 HOH B 1 401 164 HOH HOH . P 4 HOH B 2 402 187 HOH HOH . P 4 HOH B 3 403 174 HOH HOH . P 4 HOH B 4 404 231 HOH HOH . P 4 HOH B 5 405 271 HOH HOH . P 4 HOH B 6 406 81 HOH HOH . P 4 HOH B 7 407 234 HOH HOH . P 4 HOH B 8 408 213 HOH HOH . P 4 HOH B 9 409 189 HOH HOH . P 4 HOH B 10 410 112 HOH HOH . P 4 HOH B 11 411 165 HOH HOH . P 4 HOH B 12 412 12 HOH HOH . P 4 HOH B 13 413 155 HOH HOH . P 4 HOH B 14 414 270 HOH HOH . P 4 HOH B 15 415 214 HOH HOH . P 4 HOH B 16 416 278 HOH HOH . P 4 HOH B 17 417 159 HOH HOH . P 4 HOH B 18 418 30 HOH HOH . P 4 HOH B 19 419 132 HOH HOH . P 4 HOH B 20 420 304 HOH HOH . P 4 HOH B 21 421 36 HOH HOH . P 4 HOH B 22 422 179 HOH HOH . P 4 HOH B 23 423 46 HOH HOH . P 4 HOH B 24 424 216 HOH HOH . P 4 HOH B 25 425 72 HOH HOH . P 4 HOH B 26 426 127 HOH HOH . P 4 HOH B 27 427 94 HOH HOH . P 4 HOH B 28 428 134 HOH HOH . P 4 HOH B 29 429 200 HOH HOH . P 4 HOH B 30 430 142 HOH HOH . P 4 HOH B 31 431 145 HOH HOH . P 4 HOH B 32 432 24 HOH HOH . P 4 HOH B 33 433 47 HOH HOH . P 4 HOH B 34 434 256 HOH HOH . P 4 HOH B 35 435 135 HOH HOH . P 4 HOH B 36 436 82 HOH HOH . P 4 HOH B 37 437 261 HOH HOH . P 4 HOH B 38 438 137 HOH HOH . P 4 HOH B 39 439 267 HOH HOH . P 4 HOH B 40 440 194 HOH HOH . P 4 HOH B 41 441 22 HOH HOH . P 4 HOH B 42 442 17 HOH HOH . P 4 HOH B 43 443 272 HOH HOH . P 4 HOH B 44 444 105 HOH HOH . P 4 HOH B 45 445 90 HOH HOH . P 4 HOH B 46 446 52 HOH HOH . P 4 HOH B 47 447 225 HOH HOH . P 4 HOH B 48 448 124 HOH HOH . P 4 HOH B 49 449 67 HOH HOH . P 4 HOH B 50 450 6 HOH HOH . P 4 HOH B 51 451 235 HOH HOH . P 4 HOH B 52 452 71 HOH HOH . P 4 HOH B 53 453 66 HOH HOH . P 4 HOH B 54 454 121 HOH HOH . P 4 HOH B 55 455 101 HOH HOH . P 4 HOH B 56 456 297 HOH HOH . P 4 HOH B 57 457 35 HOH HOH . P 4 HOH B 58 458 253 HOH HOH . P 4 HOH B 59 459 150 HOH HOH . P 4 HOH B 60 460 14 HOH HOH . P 4 HOH B 61 461 299 HOH HOH . P 4 HOH B 62 462 289 HOH HOH . P 4 HOH B 63 463 181 HOH HOH . P 4 HOH B 64 464 300 HOH HOH . P 4 HOH B 65 465 97 HOH HOH . P 4 HOH B 66 466 59 HOH HOH . P 4 HOH B 67 467 18 HOH HOH . P 4 HOH B 68 468 163 HOH HOH . P 4 HOH B 69 469 148 HOH HOH . P 4 HOH B 70 470 44 HOH HOH . P 4 HOH B 71 471 178 HOH HOH . P 4 HOH B 72 472 166 HOH HOH . P 4 HOH B 73 473 217 HOH HOH . P 4 HOH B 74 474 21 HOH HOH . P 4 HOH B 75 475 220 HOH HOH . P 4 HOH B 76 476 118 HOH HOH . P 4 HOH B 77 477 8 HOH HOH . P 4 HOH B 78 478 32 HOH HOH . P 4 HOH B 79 479 230 HOH HOH . P 4 HOH B 80 480 185 HOH HOH . P 4 HOH B 81 481 282 HOH HOH . P 4 HOH B 82 482 43 HOH HOH . P 4 HOH B 83 483 203 HOH HOH . P 4 HOH B 84 484 182 HOH HOH . P 4 HOH B 85 485 208 HOH HOH . P 4 HOH B 86 486 196 HOH HOH . P 4 HOH B 87 487 154 HOH HOH . P 4 HOH B 88 488 76 HOH HOH . P 4 HOH B 89 489 157 HOH HOH . P 4 HOH B 90 490 61 HOH HOH . P 4 HOH B 91 491 206 HOH HOH . P 4 HOH B 92 492 133 HOH HOH . P 4 HOH B 93 493 139 HOH HOH . P 4 HOH B 94 494 20 HOH HOH . P 4 HOH B 95 495 242 HOH HOH . P 4 HOH B 96 496 254 HOH HOH . P 4 HOH B 97 497 210 HOH HOH . P 4 HOH B 98 498 212 HOH HOH . P 4 HOH B 99 499 125 HOH HOH . P 4 HOH B 100 500 123 HOH HOH . Q 4 HOH C 1 401 293 HOH HOH . Q 4 HOH C 2 402 285 HOH HOH . Q 4 HOH C 3 403 243 HOH HOH . Q 4 HOH C 4 404 303 HOH HOH . Q 4 HOH C 5 405 5 HOH HOH . Q 4 HOH C 6 406 274 HOH HOH . Q 4 HOH C 7 407 264 HOH HOH . Q 4 HOH C 8 408 306 HOH HOH . Q 4 HOH C 9 409 143 HOH HOH . Q 4 HOH C 10 410 42 HOH HOH . Q 4 HOH C 11 411 85 HOH HOH . Q 4 HOH C 12 412 268 HOH HOH . Q 4 HOH C 13 413 131 HOH HOH . Q 4 HOH C 14 414 260 HOH HOH . Q 4 HOH C 15 415 173 HOH HOH . Q 4 HOH C 16 416 149 HOH HOH . Q 4 HOH C 17 417 53 HOH HOH . Q 4 HOH C 18 418 192 HOH HOH . Q 4 HOH C 19 419 27 HOH HOH . Q 4 HOH C 20 420 258 HOH HOH . Q 4 HOH C 21 421 19 HOH HOH . Q 4 HOH C 22 422 193 HOH HOH . Q 4 HOH C 23 423 170 HOH HOH . Q 4 HOH C 24 424 69 HOH HOH . Q 4 HOH C 25 425 40 HOH HOH . Q 4 HOH C 26 426 141 HOH HOH . Q 4 HOH C 27 427 184 HOH HOH . Q 4 HOH C 28 428 41 HOH HOH . Q 4 HOH C 29 429 25 HOH HOH . Q 4 HOH C 30 430 55 HOH HOH . Q 4 HOH C 31 431 284 HOH HOH . Q 4 HOH C 32 432 218 HOH HOH . Q 4 HOH C 33 433 201 HOH HOH . Q 4 HOH C 34 434 222 HOH HOH . Q 4 HOH C 35 435 255 HOH HOH . Q 4 HOH C 36 436 246 HOH HOH . Q 4 HOH C 37 437 56 HOH HOH . Q 4 HOH C 38 438 250 HOH HOH . Q 4 HOH C 39 439 108 HOH HOH . Q 4 HOH C 40 440 117 HOH HOH . Q 4 HOH C 41 441 140 HOH HOH . Q 4 HOH C 42 442 156 HOH HOH . Q 4 HOH C 43 443 241 HOH HOH . Q 4 HOH C 44 444 209 HOH HOH . Q 4 HOH C 45 445 152 HOH HOH . Q 4 HOH C 46 446 223 HOH HOH . Q 4 HOH C 47 447 236 HOH HOH . R 4 HOH D 1 401 275 HOH HOH . R 4 HOH D 2 402 83 HOH HOH . R 4 HOH D 3 403 4 HOH HOH . R 4 HOH D 4 404 175 HOH HOH . R 4 HOH D 5 405 199 HOH HOH . R 4 HOH D 6 406 301 HOH HOH . R 4 HOH D 7 407 89 HOH HOH . R 4 HOH D 8 408 86 HOH HOH . R 4 HOH D 9 409 48 HOH HOH . R 4 HOH D 10 410 31 HOH HOH . R 4 HOH D 11 411 16 HOH HOH . R 4 HOH D 12 412 291 HOH HOH . R 4 HOH D 13 413 263 HOH HOH . R 4 HOH D 14 414 153 HOH HOH . R 4 HOH D 15 415 104 HOH HOH . R 4 HOH D 16 416 207 HOH HOH . R 4 HOH D 17 417 281 HOH HOH . R 4 HOH D 18 418 80 HOH HOH . R 4 HOH D 19 419 202 HOH HOH . R 4 HOH D 20 420 257 HOH HOH . R 4 HOH D 21 421 195 HOH HOH . R 4 HOH D 22 422 92 HOH HOH . R 4 HOH D 23 423 26 HOH HOH . R 4 HOH D 24 424 23 HOH HOH . R 4 HOH D 25 425 233 HOH HOH . R 4 HOH D 26 426 211 HOH HOH . R 4 HOH D 27 427 28 HOH HOH . R 4 HOH D 28 428 129 HOH HOH . R 4 HOH D 29 429 114 HOH HOH . R 4 HOH D 30 430 7 HOH HOH . R 4 HOH D 31 431 54 HOH HOH . R 4 HOH D 32 432 162 HOH HOH . R 4 HOH D 33 433 62 HOH HOH . R 4 HOH D 34 434 68 HOH HOH . R 4 HOH D 35 435 219 HOH HOH . R 4 HOH D 36 436 96 HOH HOH . R 4 HOH D 37 437 15 HOH HOH . R 4 HOH D 38 438 130 HOH HOH . R 4 HOH D 39 439 238 HOH HOH . R 4 HOH D 40 440 109 HOH HOH . R 4 HOH D 41 441 180 HOH HOH . R 4 HOH D 42 442 74 HOH HOH . R 4 HOH D 43 443 38 HOH HOH . R 4 HOH D 44 444 107 HOH HOH . R 4 HOH D 45 445 287 HOH HOH . R 4 HOH D 46 446 50 HOH HOH . R 4 HOH D 47 447 237 HOH HOH . R 4 HOH D 48 448 190 HOH HOH . R 4 HOH D 49 449 302 HOH HOH . R 4 HOH D 50 450 99 HOH HOH . R 4 HOH D 51 451 70 HOH HOH . R 4 HOH D 52 452 64 HOH HOH . R 4 HOH D 53 453 13 HOH HOH . R 4 HOH D 54 454 183 HOH HOH . R 4 HOH D 55 455 167 HOH HOH . R 4 HOH D 56 456 245 HOH HOH . R 4 HOH D 57 457 229 HOH HOH . R 4 HOH D 58 458 186 HOH HOH . R 4 HOH D 59 459 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 3 -5.156 -4.637 62.551 1 35.29 ? C1 EDO 302 A 1 HETATM 2 O O1 EDO . . . F 3 -5.879 -4.826 61.346 1 33.73 ? O1 EDO 302 A 1 HETATM 3 C C2 EDO . . . F 3 -3.774 -5.304 62.402 1 37.34 ? C2 EDO 302 A 1 HETATM 4 O O2 EDO . . . F 3 -3.001 -4.583 61.447 1 38.6 ? O2 EDO 302 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 610 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #