data_5SYT # _model_server_result.job_id S0OAIdazFUD2rlQ8jBjq7g _model_server_result.datetime_utc '2024-11-23 00:45:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5syt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":510}' # _entry.id 5SYT # _exptl.entry_id 5SYT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.438 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.07 _cell.angle_gamma 90 _cell.entry_id 5SYT _cell.length_a 149.455 _cell.length_b 84.56 _cell.length_c 76.885 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SYT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 335 A HIS 335 1_555 R ZN ZN . A ZN 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc2 A NE2 HIS 339 A HIS 339 1_555 R ZN ZN . A ZN 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc3 A OE2 GLU 415 A GLU 415 1_555 R ZN ZN . A ZN 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? metalc ? metalc4 R ZN ZN . A ZN 517 1_555 Y O HOH . A HOH 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? # _chem_comp.formula 'C16 H34 O5' _chem_comp.formula_weight 306.438 _chem_comp.id C8E _chem_comp.mon_nstd_flag . _chem_comp.name (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 C8E sing 70 n n C1 H11 C8E sing 71 n n C1 H12 C8E sing 72 n n C1 H13 C8E sing 73 n n C2 C3 C8E sing 74 n n C2 H21 C8E sing 75 n n C2 H22 C8E sing 76 n n C3 C4 C8E sing 77 n n C3 H31 C8E sing 78 n n C3 H32 C8E sing 79 n n C4 C5 C8E sing 80 n n C4 H41 C8E sing 81 n n C4 H42 C8E sing 82 n n C5 C6 C8E sing 83 n n C5 H51 C8E sing 84 n n C5 H52 C8E sing 85 n n C6 C7 C8E sing 86 n n C6 H61 C8E sing 87 n n C6 H62 C8E sing 88 n n C7 C8 C8E sing 89 n n C7 H71 C8E sing 90 n n C7 H72 C8E sing 91 n n C8 O9 C8E sing 92 n n C8 H81 C8E sing 93 n n C8 H82 C8E sing 94 n n O9 C10 C8E sing 95 n n C10 C11 C8E sing 96 n n C10 H101 C8E sing 97 n n C10 H102 C8E sing 98 n n C11 O12 C8E sing 99 n n C11 H111 C8E sing 100 n n C11 H112 C8E sing 101 n n O12 C13 C8E sing 102 n n C13 C14 C8E sing 103 n n C13 H131 C8E sing 104 n n C13 H132 C8E sing 105 n n C14 O15 C8E sing 106 n n C14 H141 C8E sing 107 n n C14 H142 C8E sing 108 n n O15 C16 C8E sing 109 n n C16 C17 C8E sing 110 n n C16 H161 C8E sing 111 n n C16 H162 C8E sing 112 n n C17 O18 C8E sing 113 n n C17 H171 C8E sing 114 n n C17 H172 C8E sing 115 n n O18 C19 C8E sing 116 n n C19 C20 C8E sing 117 n n C19 H191 C8E sing 118 n n C19 H192 C8E sing 119 n n C20 O21 C8E sing 120 n n C20 H201 C8E sing 121 n n C20 H202 C8E sing 122 n n O21 HO2 C8E sing 123 n n # _atom_sites.entry_id 5SYT _atom_sites.fract_transf_matrix[1][1] 0.006691 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003719 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011826 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 1 SO4 SO4 . C 2 SO4 A 1 502 2 SO4 SO4 . D 3 PC1 A 1 503 2 PC1 PC1 . E 4 CXE A 1 504 1 CXE CXE . F 5 C8E A 1 505 3 C8E C8E . G 5 C8E A 1 506 8 C8E C8E . H 5 C8E A 1 507 11 C8E C8E . I 5 C8E A 1 508 12 C8E C8E . J 5 C8E A 1 509 13 C8E C8E . K 5 C8E A 1 510 14 C8E C8E . L 5 C8E A 1 511 16 C8E C8E . M 5 C8E A 1 512 18 C8E C8E . N 5 C8E A 1 513 19 C8E C8E . O 5 C8E A 1 514 20 C8E C8E . P 5 C8E A 1 515 21 C8E C8E . Q 5 C8E A 1 516 22 C8E C8E . R 6 ZN A 1 517 1 ZN ZN . S 7 GOL A 1 518 1 GOL GOL . T 7 GOL A 1 519 2 GOL GOL . U 8 PEG A 1 520 1 PEG PEG . V 9 DMS A 1 521 2 DMS DMS . W 9 DMS A 1 522 3 DMS DMS . X 9 DMS A 1 523 4 DMS DMS . Y 10 HOH A 1 601 34 HOH HOH . Y 10 HOH A 2 602 108 HOH HOH . Y 10 HOH A 3 603 116 HOH HOH . Y 10 HOH A 4 604 111 HOH HOH . Y 10 HOH A 5 605 113 HOH HOH . Y 10 HOH A 6 606 99 HOH HOH . Y 10 HOH A 7 607 120 HOH HOH . Y 10 HOH A 8 608 147 HOH HOH . Y 10 HOH A 9 609 75 HOH HOH . Y 10 HOH A 10 610 82 HOH HOH . Y 10 HOH A 11 611 134 HOH HOH . Y 10 HOH A 12 612 49 HOH HOH . Y 10 HOH A 13 613 22 HOH HOH . Y 10 HOH A 14 614 57 HOH HOH . Y 10 HOH A 15 615 20 HOH HOH . Y 10 HOH A 16 616 142 HOH HOH . Y 10 HOH A 17 617 148 HOH HOH . Y 10 HOH A 18 618 157 HOH HOH . Y 10 HOH A 19 619 1 HOH HOH . Y 10 HOH A 20 620 79 HOH HOH . Y 10 HOH A 21 621 13 HOH HOH . Y 10 HOH A 22 622 37 HOH HOH . Y 10 HOH A 23 623 85 HOH HOH . Y 10 HOH A 24 624 154 HOH HOH . Y 10 HOH A 25 625 30 HOH HOH . Y 10 HOH A 26 626 18 HOH HOH . Y 10 HOH A 27 627 5 HOH HOH . Y 10 HOH A 28 628 107 HOH HOH . Y 10 HOH A 29 629 3 HOH HOH . Y 10 HOH A 30 630 98 HOH HOH . Y 10 HOH A 31 631 47 HOH HOH . Y 10 HOH A 32 632 70 HOH HOH . Y 10 HOH A 33 633 95 HOH HOH . Y 10 HOH A 34 634 53 HOH HOH . Y 10 HOH A 35 635 6 HOH HOH . Y 10 HOH A 36 636 81 HOH HOH . Y 10 HOH A 37 637 9 HOH HOH . Y 10 HOH A 38 638 27 HOH HOH . Y 10 HOH A 39 639 80 HOH HOH . Y 10 HOH A 40 640 26 HOH HOH . Y 10 HOH A 41 641 29 HOH HOH . Y 10 HOH A 42 642 145 HOH HOH . Y 10 HOH A 43 643 71 HOH HOH . Y 10 HOH A 44 644 12 HOH HOH . Y 10 HOH A 45 645 15 HOH HOH . Y 10 HOH A 46 646 69 HOH HOH . Y 10 HOH A 47 647 17 HOH HOH . Y 10 HOH A 48 648 72 HOH HOH . Y 10 HOH A 49 649 10 HOH HOH . Y 10 HOH A 50 650 123 HOH HOH . Y 10 HOH A 51 651 102 HOH HOH . Y 10 HOH A 52 652 33 HOH HOH . Y 10 HOH A 53 653 92 HOH HOH . Y 10 HOH A 54 654 105 HOH HOH . Y 10 HOH A 55 655 136 HOH HOH . Y 10 HOH A 56 656 112 HOH HOH . Y 10 HOH A 57 657 7 HOH HOH . Y 10 HOH A 58 658 39 HOH HOH . Y 10 HOH A 59 659 155 HOH HOH . Y 10 HOH A 60 660 59 HOH HOH . Y 10 HOH A 61 661 76 HOH HOH . Y 10 HOH A 62 662 14 HOH HOH . Y 10 HOH A 63 663 21 HOH HOH . Y 10 HOH A 64 664 2 HOH HOH . Y 10 HOH A 65 665 44 HOH HOH . Y 10 HOH A 66 666 73 HOH HOH . Y 10 HOH A 67 667 77 HOH HOH . Y 10 HOH A 68 668 40 HOH HOH . Y 10 HOH A 69 669 88 HOH HOH . Y 10 HOH A 70 670 4 HOH HOH . Y 10 HOH A 71 671 127 HOH HOH . Y 10 HOH A 72 672 104 HOH HOH . Y 10 HOH A 73 673 132 HOH HOH . Y 10 HOH A 74 674 42 HOH HOH . Y 10 HOH A 75 675 94 HOH HOH . Y 10 HOH A 76 676 61 HOH HOH . Y 10 HOH A 77 677 149 HOH HOH . Y 10 HOH A 78 678 50 HOH HOH . Y 10 HOH A 79 679 128 HOH HOH . Y 10 HOH A 80 680 35 HOH HOH . Y 10 HOH A 81 681 74 HOH HOH . Y 10 HOH A 82 682 11 HOH HOH . Y 10 HOH A 83 683 100 HOH HOH . Y 10 HOH A 84 684 124 HOH HOH . Y 10 HOH A 85 685 131 HOH HOH . Y 10 HOH A 86 686 38 HOH HOH . Y 10 HOH A 87 687 51 HOH HOH . Y 10 HOH A 88 688 54 HOH HOH . Y 10 HOH A 89 689 97 HOH HOH . Y 10 HOH A 90 690 8 HOH HOH . Y 10 HOH A 91 691 19 HOH HOH . Y 10 HOH A 92 692 151 HOH HOH . Y 10 HOH A 93 693 117 HOH HOH . Y 10 HOH A 94 694 46 HOH HOH . Y 10 HOH A 95 695 41 HOH HOH . Y 10 HOH A 96 696 58 HOH HOH . Y 10 HOH A 97 697 130 HOH HOH . Y 10 HOH A 98 698 52 HOH HOH . Y 10 HOH A 99 699 89 HOH HOH . Y 10 HOH A 100 700 64 HOH HOH . Y 10 HOH A 101 701 32 HOH HOH . Y 10 HOH A 102 702 16 HOH HOH . Y 10 HOH A 103 703 87 HOH HOH . Y 10 HOH A 104 704 28 HOH HOH . Y 10 HOH A 105 705 146 HOH HOH . Y 10 HOH A 106 706 163 HOH HOH . Y 10 HOH A 107 707 25 HOH HOH . Y 10 HOH A 108 708 93 HOH HOH . Y 10 HOH A 109 709 24 HOH HOH . Y 10 HOH A 110 710 56 HOH HOH . Y 10 HOH A 111 711 119 HOH HOH . Y 10 HOH A 112 712 153 HOH HOH . Y 10 HOH A 113 713 62 HOH HOH . Y 10 HOH A 114 714 129 HOH HOH . Y 10 HOH A 115 715 86 HOH HOH . Y 10 HOH A 116 716 101 HOH HOH . Y 10 HOH A 117 717 162 HOH HOH . Y 10 HOH A 118 718 96 HOH HOH . Y 10 HOH A 119 719 78 HOH HOH . Y 10 HOH A 120 720 45 HOH HOH . Y 10 HOH A 121 721 110 HOH HOH . Y 10 HOH A 122 722 31 HOH HOH . Y 10 HOH A 123 723 140 HOH HOH . Y 10 HOH A 124 724 103 HOH HOH . Y 10 HOH A 125 725 63 HOH HOH . Y 10 HOH A 126 726 91 HOH HOH . Y 10 HOH A 127 727 126 HOH HOH . Y 10 HOH A 128 728 114 HOH HOH . Y 10 HOH A 129 729 109 HOH HOH . Y 10 HOH A 130 730 165 HOH HOH . Y 10 HOH A 131 731 48 HOH HOH . Y 10 HOH A 132 732 137 HOH HOH . Y 10 HOH A 133 733 23 HOH HOH . Y 10 HOH A 134 734 152 HOH HOH . Y 10 HOH A 135 735 150 HOH HOH . Y 10 HOH A 136 736 159 HOH HOH . Y 10 HOH A 137 737 141 HOH HOH . Y 10 HOH A 138 738 166 HOH HOH . Y 10 HOH A 139 739 143 HOH HOH . Y 10 HOH A 140 740 156 HOH HOH . Y 10 HOH A 141 741 43 HOH HOH . Y 10 HOH A 142 742 139 HOH HOH . Y 10 HOH A 143 743 118 HOH HOH . Y 10 HOH A 144 744 83 HOH HOH . Y 10 HOH A 145 745 115 HOH HOH . Y 10 HOH A 146 746 55 HOH HOH . Y 10 HOH A 147 747 135 HOH HOH . Y 10 HOH A 148 748 138 HOH HOH . Y 10 HOH A 149 749 144 HOH HOH . Y 10 HOH A 150 750 84 HOH HOH . Y 10 HOH A 151 751 68 HOH HOH . Y 10 HOH A 152 752 121 HOH HOH . Y 10 HOH A 153 753 36 HOH HOH . Y 10 HOH A 154 754 106 HOH HOH . Y 10 HOH A 155 755 160 HOH HOH . Y 10 HOH A 156 756 161 HOH HOH . Y 10 HOH A 157 757 90 HOH HOH . Y 10 HOH A 158 758 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O9 C8E . . . K 5 -132.878 -270.37 31.43 1 56.21 ? O9 C8E 510 A 1 HETATM 2 C C10 C8E . . . K 5 -131.457 -270.371 31.423 1 45.37 ? C10 C8E 510 A 1 HETATM 3 C C11 C8E . . . K 5 -131.014 -268.97 31.861 1 38.67 ? C11 C8E 510 A 1 HETATM 4 O O12 C8E . . . K 5 -130.357 -268.98 33.11 1 49.44 ? O12 C8E 510 A 1 HETATM 5 C C13 C8E . . . K 5 -130.206 -267.677 33.656 1 36.82 ? C13 C8E 510 A 1 HETATM 6 C C14 C8E . . . K 5 -130.497 -267.656 35.159 1 35.55 ? C14 C8E 510 A 1 HETATM 7 O O15 C8E . . . K 5 -130.767 -268.93 35.74 1 47.32 ? O15 C8E 510 A 1 HETATM 8 C C16 C8E . . . K 5 -130.408 -269.077 37.109 1 34.67 ? C16 C8E 510 A 1 HETATM 9 C C17 C8E . . . K 5 -129.194 -270.011 37.246 1 43 ? C17 C8E 510 A 1 HETATM 10 O O18 C8E . . . K 5 -128.24 -269.461 38.133 1 41.89 ? O18 C8E 510 A 1 HETATM 11 C C19 C8E . . . K 5 -126.975 -270.082 38.017 1 41.47 ? C19 C8E 510 A 1 HETATM 12 C C20 C8E . . . K 5 -126.14 -269.4 36.934 1 40.64 ? C20 C8E 510 A 1 HETATM 13 O O21 C8E . . . K 5 -124.803 -269.261 37.339 1 43.44 ? O21 C8E 510 A 1 HETATM 14 H H101 C8E . . . K 5 -131.075 -271.122 32.115 1 54.44 ? H101 C8E 510 A 1 HETATM 15 H H102 C8E . . . K 5 -131.082 -270.592 30.423 1 54.44 ? H102 C8E 510 A 1 HETATM 16 H H111 C8E . . . K 5 -131.888 -268.321 31.921 1 46.41 ? H111 C8E 510 A 1 HETATM 17 H H112 C8E . . . K 5 -130.345 -268.554 31.107 1 46.41 ? H112 C8E 510 A 1 HETATM 18 H H131 C8E . . . K 5 -130.885 -266.992 33.148 1 44.19 ? H131 C8E 510 A 1 HETATM 19 H H132 C8E . . . K 5 -129.188 -267.328 33.481 1 44.19 ? H132 C8E 510 A 1 HETATM 20 H H141 C8E . . . K 5 -131.352 -267.004 35.339 1 42.66 ? H141 C8E 510 A 1 HETATM 21 H H142 C8E . . . K 5 -129.644 -267.214 35.673 1 42.66 ? H142 C8E 510 A 1 HETATM 22 H H161 C8E . . . K 5 -130.167 -268.101 37.531 1 41.61 ? H161 C8E 510 A 1 HETATM 23 H H162 C8E . . . K 5 -131.25 -269.487 37.666 1 41.61 ? H162 C8E 510 A 1 HETATM 24 H H171 C8E . . . K 5 -129.522 -270.982 37.618 1 51.6 ? H171 C8E 510 A 1 HETATM 25 H H172 C8E . . . K 5 -128.738 -270.162 36.267 1 51.6 ? H172 C8E 510 A 1 HETATM 26 H H191 C8E . . . K 5 -127.107 -271.135 37.767 1 49.76 ? H191 C8E 510 A 1 HETATM 27 H H192 C8E . . . K 5 -126.452 -270.025 38.972 1 49.76 ? H192 C8E 510 A 1 HETATM 28 H H201 C8E . . . K 5 -126.183 -269.989 36.018 1 48.76 ? H201 C8E 510 A 1 HETATM 29 H H202 C8E . . . K 5 -126.558 -268.416 36.719 1 48.76 ? H202 C8E 510 A 1 HETATM 30 H HO2 C8E . . . K 5 -124.245 -269.058 36.559 1 52.12 ? HO2 C8E 510 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #