data_5SYT # _model_server_result.job_id HaDm4GoKeCc7oc12ZUddHQ _model_server_result.datetime_utc '2024-11-23 00:56:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5syt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":521}' # _entry.id 5SYT # _exptl.entry_id 5SYT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.07 _cell.angle_gamma 90 _cell.entry_id 5SYT _cell.length_a 149.455 _cell.length_b 84.56 _cell.length_c 76.885 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SYT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 V N N ? 9 W N N ? 9 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 335 A HIS 335 1_555 R ZN ZN . A ZN 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc2 A NE2 HIS 339 A HIS 339 1_555 R ZN ZN . A ZN 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc3 A OE2 GLU 415 A GLU 415 1_555 R ZN ZN . A ZN 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? metalc ? metalc4 R ZN ZN . A ZN 517 1_555 Y O HOH . A HOH 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 204 n n S C1 DMS sing 205 n n S C2 DMS sing 206 n n C1 H11 DMS sing 207 n n C1 H12 DMS sing 208 n n C1 H13 DMS sing 209 n n C2 H21 DMS sing 210 n n C2 H22 DMS sing 211 n n C2 H23 DMS sing 212 n n # _atom_sites.entry_id 5SYT _atom_sites.fract_transf_matrix[1][1] 0.006691 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003719 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011826 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 1 SO4 SO4 . C 2 SO4 A 1 502 2 SO4 SO4 . D 3 PC1 A 1 503 2 PC1 PC1 . E 4 CXE A 1 504 1 CXE CXE . F 5 C8E A 1 505 3 C8E C8E . G 5 C8E A 1 506 8 C8E C8E . H 5 C8E A 1 507 11 C8E C8E . I 5 C8E A 1 508 12 C8E C8E . J 5 C8E A 1 509 13 C8E C8E . K 5 C8E A 1 510 14 C8E C8E . L 5 C8E A 1 511 16 C8E C8E . M 5 C8E A 1 512 18 C8E C8E . N 5 C8E A 1 513 19 C8E C8E . O 5 C8E A 1 514 20 C8E C8E . P 5 C8E A 1 515 21 C8E C8E . Q 5 C8E A 1 516 22 C8E C8E . R 6 ZN A 1 517 1 ZN ZN . S 7 GOL A 1 518 1 GOL GOL . T 7 GOL A 1 519 2 GOL GOL . U 8 PEG A 1 520 1 PEG PEG . V 9 DMS A 1 521 2 DMS DMS . W 9 DMS A 1 522 3 DMS DMS . X 9 DMS A 1 523 4 DMS DMS . Y 10 HOH A 1 601 34 HOH HOH . Y 10 HOH A 2 602 108 HOH HOH . Y 10 HOH A 3 603 116 HOH HOH . Y 10 HOH A 4 604 111 HOH HOH . Y 10 HOH A 5 605 113 HOH HOH . Y 10 HOH A 6 606 99 HOH HOH . Y 10 HOH A 7 607 120 HOH HOH . Y 10 HOH A 8 608 147 HOH HOH . Y 10 HOH A 9 609 75 HOH HOH . Y 10 HOH A 10 610 82 HOH HOH . Y 10 HOH A 11 611 134 HOH HOH . Y 10 HOH A 12 612 49 HOH HOH . Y 10 HOH A 13 613 22 HOH HOH . Y 10 HOH A 14 614 57 HOH HOH . Y 10 HOH A 15 615 20 HOH HOH . Y 10 HOH A 16 616 142 HOH HOH . Y 10 HOH A 17 617 148 HOH HOH . Y 10 HOH A 18 618 157 HOH HOH . Y 10 HOH A 19 619 1 HOH HOH . Y 10 HOH A 20 620 79 HOH HOH . Y 10 HOH A 21 621 13 HOH HOH . Y 10 HOH A 22 622 37 HOH HOH . Y 10 HOH A 23 623 85 HOH HOH . Y 10 HOH A 24 624 154 HOH HOH . Y 10 HOH A 25 625 30 HOH HOH . Y 10 HOH A 26 626 18 HOH HOH . Y 10 HOH A 27 627 5 HOH HOH . Y 10 HOH A 28 628 107 HOH HOH . Y 10 HOH A 29 629 3 HOH HOH . Y 10 HOH A 30 630 98 HOH HOH . Y 10 HOH A 31 631 47 HOH HOH . Y 10 HOH A 32 632 70 HOH HOH . Y 10 HOH A 33 633 95 HOH HOH . Y 10 HOH A 34 634 53 HOH HOH . Y 10 HOH A 35 635 6 HOH HOH . Y 10 HOH A 36 636 81 HOH HOH . Y 10 HOH A 37 637 9 HOH HOH . Y 10 HOH A 38 638 27 HOH HOH . Y 10 HOH A 39 639 80 HOH HOH . Y 10 HOH A 40 640 26 HOH HOH . Y 10 HOH A 41 641 29 HOH HOH . Y 10 HOH A 42 642 145 HOH HOH . Y 10 HOH A 43 643 71 HOH HOH . Y 10 HOH A 44 644 12 HOH HOH . Y 10 HOH A 45 645 15 HOH HOH . Y 10 HOH A 46 646 69 HOH HOH . Y 10 HOH A 47 647 17 HOH HOH . Y 10 HOH A 48 648 72 HOH HOH . Y 10 HOH A 49 649 10 HOH HOH . Y 10 HOH A 50 650 123 HOH HOH . Y 10 HOH A 51 651 102 HOH HOH . Y 10 HOH A 52 652 33 HOH HOH . Y 10 HOH A 53 653 92 HOH HOH . Y 10 HOH A 54 654 105 HOH HOH . Y 10 HOH A 55 655 136 HOH HOH . Y 10 HOH A 56 656 112 HOH HOH . Y 10 HOH A 57 657 7 HOH HOH . Y 10 HOH A 58 658 39 HOH HOH . Y 10 HOH A 59 659 155 HOH HOH . Y 10 HOH A 60 660 59 HOH HOH . Y 10 HOH A 61 661 76 HOH HOH . Y 10 HOH A 62 662 14 HOH HOH . Y 10 HOH A 63 663 21 HOH HOH . Y 10 HOH A 64 664 2 HOH HOH . Y 10 HOH A 65 665 44 HOH HOH . Y 10 HOH A 66 666 73 HOH HOH . Y 10 HOH A 67 667 77 HOH HOH . Y 10 HOH A 68 668 40 HOH HOH . Y 10 HOH A 69 669 88 HOH HOH . Y 10 HOH A 70 670 4 HOH HOH . Y 10 HOH A 71 671 127 HOH HOH . Y 10 HOH A 72 672 104 HOH HOH . Y 10 HOH A 73 673 132 HOH HOH . Y 10 HOH A 74 674 42 HOH HOH . Y 10 HOH A 75 675 94 HOH HOH . Y 10 HOH A 76 676 61 HOH HOH . Y 10 HOH A 77 677 149 HOH HOH . Y 10 HOH A 78 678 50 HOH HOH . Y 10 HOH A 79 679 128 HOH HOH . Y 10 HOH A 80 680 35 HOH HOH . Y 10 HOH A 81 681 74 HOH HOH . Y 10 HOH A 82 682 11 HOH HOH . Y 10 HOH A 83 683 100 HOH HOH . Y 10 HOH A 84 684 124 HOH HOH . Y 10 HOH A 85 685 131 HOH HOH . Y 10 HOH A 86 686 38 HOH HOH . Y 10 HOH A 87 687 51 HOH HOH . Y 10 HOH A 88 688 54 HOH HOH . Y 10 HOH A 89 689 97 HOH HOH . Y 10 HOH A 90 690 8 HOH HOH . Y 10 HOH A 91 691 19 HOH HOH . Y 10 HOH A 92 692 151 HOH HOH . Y 10 HOH A 93 693 117 HOH HOH . Y 10 HOH A 94 694 46 HOH HOH . Y 10 HOH A 95 695 41 HOH HOH . Y 10 HOH A 96 696 58 HOH HOH . Y 10 HOH A 97 697 130 HOH HOH . Y 10 HOH A 98 698 52 HOH HOH . Y 10 HOH A 99 699 89 HOH HOH . Y 10 HOH A 100 700 64 HOH HOH . Y 10 HOH A 101 701 32 HOH HOH . Y 10 HOH A 102 702 16 HOH HOH . Y 10 HOH A 103 703 87 HOH HOH . Y 10 HOH A 104 704 28 HOH HOH . Y 10 HOH A 105 705 146 HOH HOH . Y 10 HOH A 106 706 163 HOH HOH . Y 10 HOH A 107 707 25 HOH HOH . Y 10 HOH A 108 708 93 HOH HOH . Y 10 HOH A 109 709 24 HOH HOH . Y 10 HOH A 110 710 56 HOH HOH . Y 10 HOH A 111 711 119 HOH HOH . Y 10 HOH A 112 712 153 HOH HOH . Y 10 HOH A 113 713 62 HOH HOH . Y 10 HOH A 114 714 129 HOH HOH . Y 10 HOH A 115 715 86 HOH HOH . Y 10 HOH A 116 716 101 HOH HOH . Y 10 HOH A 117 717 162 HOH HOH . Y 10 HOH A 118 718 96 HOH HOH . Y 10 HOH A 119 719 78 HOH HOH . Y 10 HOH A 120 720 45 HOH HOH . Y 10 HOH A 121 721 110 HOH HOH . Y 10 HOH A 122 722 31 HOH HOH . Y 10 HOH A 123 723 140 HOH HOH . Y 10 HOH A 124 724 103 HOH HOH . Y 10 HOH A 125 725 63 HOH HOH . Y 10 HOH A 126 726 91 HOH HOH . Y 10 HOH A 127 727 126 HOH HOH . Y 10 HOH A 128 728 114 HOH HOH . Y 10 HOH A 129 729 109 HOH HOH . Y 10 HOH A 130 730 165 HOH HOH . Y 10 HOH A 131 731 48 HOH HOH . Y 10 HOH A 132 732 137 HOH HOH . Y 10 HOH A 133 733 23 HOH HOH . Y 10 HOH A 134 734 152 HOH HOH . Y 10 HOH A 135 735 150 HOH HOH . Y 10 HOH A 136 736 159 HOH HOH . Y 10 HOH A 137 737 141 HOH HOH . Y 10 HOH A 138 738 166 HOH HOH . Y 10 HOH A 139 739 143 HOH HOH . Y 10 HOH A 140 740 156 HOH HOH . Y 10 HOH A 141 741 43 HOH HOH . Y 10 HOH A 142 742 139 HOH HOH . Y 10 HOH A 143 743 118 HOH HOH . Y 10 HOH A 144 744 83 HOH HOH . Y 10 HOH A 145 745 115 HOH HOH . Y 10 HOH A 146 746 55 HOH HOH . Y 10 HOH A 147 747 135 HOH HOH . Y 10 HOH A 148 748 138 HOH HOH . Y 10 HOH A 149 749 144 HOH HOH . Y 10 HOH A 150 750 84 HOH HOH . Y 10 HOH A 151 751 68 HOH HOH . Y 10 HOH A 152 752 121 HOH HOH . Y 10 HOH A 153 753 36 HOH HOH . Y 10 HOH A 154 754 106 HOH HOH . Y 10 HOH A 155 755 160 HOH HOH . Y 10 HOH A 156 756 161 HOH HOH . Y 10 HOH A 157 757 90 HOH HOH . Y 10 HOH A 158 758 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . V 9 -118.265 -292.698 0.953 1 78.9 ? S DMS 521 A 1 HETATM 2 O O DMS . . . V 9 -117.015 -293.344 1.475 1 56.58 ? O DMS 521 A 1 HETATM 3 C C1 DMS . . . V 9 -119.757 -293.595 1.476 1 77.03 ? C1 DMS 521 A 1 HETATM 4 C C2 DMS . . . V 9 -118.585 -291.185 1.874 1 46.91 ? C2 DMS 521 A 1 HETATM 5 H H11 DMS . . . V 9 -119.763 -293.686 2.531 1 92.44 ? H11 DMS 521 A 1 HETATM 6 H H12 DMS . . . V 9 -119.761 -294.56 1.038 1 92.44 ? H12 DMS 521 A 1 HETATM 7 H H13 DMS . . . V 9 -120.618 -293.063 1.163 1 92.44 ? H13 DMS 521 A 1 HETATM 8 H H21 DMS . . . V 9 -118.621 -291.403 2.909 1 56.29 ? H21 DMS 521 A 1 HETATM 9 H H22 DMS . . . V 9 -119.511 -290.774 1.567 1 56.29 ? H22 DMS 521 A 1 HETATM 10 H H23 DMS . . . V 9 -117.81 -290.488 1.687 1 56.29 ? H23 DMS 521 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #