data_5SYZ # _model_server_result.job_id aFzqay9gJG9dGchtZuehKQ _model_server_result.datetime_utc '2025-03-11 09:08:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5syz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 5SYZ # _exptl.entry_id 5SYZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.569 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S,3aR,6aR)-5-hexyl-4-phenyl-3a-(1-phenylethenyl)-1,2,3,3a,6,6a-hexahydropentalen-1-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SYZ _cell.length_a 46.312 _cell.length_b 46.312 _cell.length_c 219.966 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SYZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H34 O' _chem_comp.formula_weight 386.569 _chem_comp.id 71W _chem_comp.mon_nstd_flag . _chem_comp.name (1S,3aR,6aR)-5-hexyl-4-phenyl-3a-(1-phenylethenyl)-1,2,3,3a,6,6a-hexahydropentalen-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C28 71W doub 1 n y C27 C26 71W sing 2 n y C28 C29 71W sing 3 n y C26 C25 71W doub 4 n y C29 C24 71W doub 5 n y C25 C24 71W sing 6 n y C24 C23 71W sing 7 n n C13 C06 71W doub 8 n n C23 C05 71W sing 9 n n C23 C16 71W doub 10 n n C20 C21 71W sing 11 n n C20 C19 71W sing 12 n n C06 C07 71W sing 13 n n C06 C05 71W sing 14 n n C08 C07 71W doub 15 n y C08 C09 71W sing 16 n y C21 C22 71W sing 17 n n C07 C12 71W sing 18 n y C17 C16 71W sing 19 n n C17 C18 71W sing 20 n n C04 C05 71W sing 21 n n C04 C03 71W sing 22 n n C09 C10 71W doub 23 n y C05 C14 71W sing 24 n n C16 C15 71W sing 25 n n C18 C19 71W sing 26 n n C12 C11 71W doub 27 n y C10 C11 71W sing 28 n y C03 C02 71W sing 29 n n C14 C15 71W sing 30 n n C14 C02 71W sing 31 n n C02 O01 71W sing 32 n n O01 H011 71W sing 33 n n C02 H021 71W sing 34 n n C03 H031 71W sing 35 n n C03 H032 71W sing 36 n n C04 H041 71W sing 37 n n C04 H042 71W sing 38 n n C08 H081 71W sing 39 n n C09 H091 71W sing 40 n n C10 H101 71W sing 41 n n C11 H111 71W sing 42 n n C12 H121 71W sing 43 n n C13 H132 71W sing 44 n n C13 H131 71W sing 45 n n C14 H141 71W sing 46 n n C15 H151 71W sing 47 n n C15 H152 71W sing 48 n n C17 H172 71W sing 49 n n C17 H171 71W sing 50 n n C18 H182 71W sing 51 n n C18 H181 71W sing 52 n n C19 H192 71W sing 53 n n C19 H191 71W sing 54 n n C20 H201 71W sing 55 n n C20 H202 71W sing 56 n n C21 H212 71W sing 57 n n C21 H211 71W sing 58 n n C22 H221 71W sing 59 n n C22 H223 71W sing 60 n n C22 H222 71W sing 61 n n C25 H251 71W sing 62 n n C26 H261 71W sing 63 n n C27 H271 71W sing 64 n n C28 H281 71W sing 65 n n C29 H291 71W sing 66 n n # _atom_sites.entry_id 5SYZ _atom_sites.fract_transf_matrix[1][1] 0.021593 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021593 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004546 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 71W A 1 601 1 71W ENO . D 4 HOH A 1 701 44 HOH HOH . D 4 HOH A 2 702 37 HOH HOH . D 4 HOH A 3 703 17 HOH HOH . D 4 HOH A 4 704 50 HOH HOH . D 4 HOH A 5 705 45 HOH HOH . D 4 HOH A 6 706 10 HOH HOH . D 4 HOH A 7 707 57 HOH HOH . D 4 HOH A 8 708 4 HOH HOH . D 4 HOH A 9 709 15 HOH HOH . D 4 HOH A 10 710 47 HOH HOH . D 4 HOH A 11 711 22 HOH HOH . D 4 HOH A 12 712 38 HOH HOH . D 4 HOH A 13 713 5 HOH HOH . D 4 HOH A 14 714 20 HOH HOH . D 4 HOH A 15 715 9 HOH HOH . D 4 HOH A 16 716 23 HOH HOH . D 4 HOH A 17 717 28 HOH HOH . D 4 HOH A 18 718 43 HOH HOH . D 4 HOH A 19 719 2 HOH HOH . D 4 HOH A 20 720 34 HOH HOH . D 4 HOH A 21 721 3 HOH HOH . D 4 HOH A 22 722 8 HOH HOH . D 4 HOH A 23 723 21 HOH HOH . D 4 HOH A 24 724 26 HOH HOH . D 4 HOH A 25 725 25 HOH HOH . D 4 HOH A 26 726 24 HOH HOH . D 4 HOH A 27 727 16 HOH HOH . D 4 HOH A 28 728 56 HOH HOH . D 4 HOH A 29 729 6 HOH HOH . D 4 HOH A 30 730 54 HOH HOH . D 4 HOH A 31 731 12 HOH HOH . D 4 HOH A 32 732 27 HOH HOH . D 4 HOH A 33 733 29 HOH HOH . D 4 HOH A 34 734 18 HOH HOH . D 4 HOH A 35 735 7 HOH HOH . D 4 HOH A 36 736 40 HOH HOH . D 4 HOH A 37 737 42 HOH HOH . D 4 HOH A 38 738 52 HOH HOH . D 4 HOH A 39 739 55 HOH HOH . D 4 HOH A 40 740 11 HOH HOH . D 4 HOH A 41 741 33 HOH HOH . D 4 HOH A 42 742 1 HOH HOH . D 4 HOH A 43 743 58 HOH HOH . D 4 HOH A 44 744 41 HOH HOH . D 4 HOH A 45 745 31 HOH HOH . D 4 HOH A 46 746 32 HOH HOH . D 4 HOH A 47 747 35 HOH HOH . D 4 HOH A 48 748 39 HOH HOH . E 4 HOH C 1 801 14 HOH HOH . E 4 HOH C 2 802 13 HOH HOH . E 4 HOH C 3 803 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 71W . . . C 3 10.209 -4.213 16.042 1 58.75 ? O01 71W 601 A 1 HETATM 2 C C02 71W . . . C 3 10.996 -4.619 14.956 1 58.74 ? C02 71W 601 A 1 HETATM 3 C C03 71W . . . C 3 10.143 -5.405 13.944 1 56.72 ? C03 71W 601 A 1 HETATM 4 C C04 71W . . . C 3 10.937 -5.295 12.65 1 49.7 ? C04 71W 601 A 1 HETATM 5 C C05 71W . . . C 3 11.535 -3.862 12.657 1 51.04 ? C05 71W 601 A 1 HETATM 6 C C06 71W . . . C 3 13.031 -3.853 12.18 1 50.51 ? C06 71W 601 A 1 HETATM 7 C C07 71W . . . C 3 13.991 -2.735 12.52 1 48.44 ? C07 71W 601 A 1 HETATM 8 C C08 71W . . . C 3 13.645 -1.385 12.335 1 44.04 ? C08 71W 601 A 1 HETATM 9 C C09 71W . . . C 3 14.505 -0.332 12.653 1 41.69 ? C09 71W 601 A 1 HETATM 10 C C10 71W . . . C 3 15.766 -0.572 13.184 1 40.43 ? C10 71W 601 A 1 HETATM 11 C C11 71W . . . C 3 16.132 -1.896 13.385 1 39.99 ? C11 71W 601 A 1 HETATM 12 C C12 71W . . . C 3 15.265 -2.941 13.067 1 44.38 ? C12 71W 601 A 1 HETATM 13 C C13 71W . . . C 3 13.506 -4.868 11.435 1 49.83 ? C13 71W 601 A 1 HETATM 14 C C14 71W . . . C 3 11.45 -3.379 14.142 1 53.78 ? C14 71W 601 A 1 HETATM 15 C C15 71W . . . C 3 10.503 -2.19 14.172 1 48.31 ? C15 71W 601 A 1 HETATM 16 C C16 71W . . . C 3 10.094 -1.893 12.752 1 48.86 ? C16 71W 601 A 1 HETATM 17 C C17 71W . . . C 3 8.952 -0.955 12.554 1 52.55 ? C17 71W 601 A 1 HETATM 18 C C18 71W . . . C 3 8.963 0.526 13.049 1 61.27 ? C18 71W 601 A 1 HETATM 19 C C19 71W . . . C 3 10.35 1.228 13.301 1 68.5 ? C19 71W 601 A 1 HETATM 20 C C20 71W . . . C 3 10.934 2.042 12.097 1 72.5 ? C20 71W 601 A 1 HETATM 21 C C21 71W . . . C 3 12.239 2.854 12.36 1 73.61 ? C21 71W 601 A 1 HETATM 22 C C22 71W . . . C 3 12.049 4.224 13.043 1 73.31 ? C22 71W 601 A 1 HETATM 23 C C23 71W . . . C 3 10.637 -2.857 11.879 1 48.39 ? C23 71W 601 A 1 HETATM 24 C C24 71W . . . C 3 10.384 -3.029 10.455 1 42.12 ? C24 71W 601 A 1 HETATM 25 C C25 71W . . . C 3 9.129 -3.464 9.994 1 36.39 ? C25 71W 601 A 1 HETATM 26 C C26 71W . . . C 3 8.842 -3.65 8.639 1 40.41 ? C26 71W 601 A 1 HETATM 27 C C27 71W . . . C 3 9.802 -3.404 7.661 1 41.47 ? C27 71W 601 A 1 HETATM 28 C C28 71W . . . C 3 11.045 -2.971 8.083 1 41.81 ? C28 71W 601 A 1 HETATM 29 C C29 71W . . . C 3 11.326 -2.793 9.444 1 43.8 ? C29 71W 601 A 1 HETATM 30 H H011 71W . . . C 3 10.492 -4.609 16.739 1 70.51 ? H011 71W 601 A 1 HETATM 31 H H021 71W . . . C 3 11.762 -5.136 15.249 1 70.49 ? H021 71W 601 A 1 HETATM 32 H H031 71W . . . C 3 9.988 -6.327 14.202 1 68.07 ? H031 71W 601 A 1 HETATM 33 H H032 71W . . . C 3 9.258 -5.023 13.838 1 68.07 ? H032 71W 601 A 1 HETATM 34 H H041 71W . . . C 3 11.606 -5.996 12.61 1 59.65 ? H041 71W 601 A 1 HETATM 35 H H042 71W . . . C 3 10.371 -5.472 11.883 1 59.65 ? H042 71W 601 A 1 HETATM 36 H H081 71W . . . C 3 12.819 -1.145 11.983 1 52.85 ? H081 71W 601 A 1 HETATM 37 H H091 71W . . . C 3 14.258 0.554 12.515 1 50.03 ? H091 71W 601 A 1 HETATM 38 H H101 71W . . . C 3 16.343 0.126 13.396 1 48.52 ? H101 71W 601 A 1 HETATM 39 H H111 71W . . . C 3 16.975 -2.061 13.741 1 47.99 ? H111 71W 601 A 1 HETATM 40 H H121 71W . . . C 3 15.584 -3.8 13.231 1 53.26 ? H121 71W 601 A 1 HETATM 41 H H132 71W . . . C 3 14.379 -4.926 11.12 1 59.8 ? H132 71W 601 A 1 HETATM 42 H H131 71W . . . C 3 13.042 -5.621 11.147 1 59.8 ? H131 71W 601 A 1 HETATM 43 H H141 71W . . . C 3 12.314 -3.116 14.495 1 64.54 ? H141 71W 601 A 1 HETATM 44 H H151 71W . . . C 3 9.691 -2.367 14.672 1 57.98 ? H151 71W 601 A 1 HETATM 45 H H152 71W . . . C 3 10.835 -1.434 14.681 1 57.98 ? H152 71W 601 A 1 HETATM 46 H H172 71W . . . C 3 8.207 -1.385 13.003 1 63.07 ? H172 71W 601 A 1 HETATM 47 H H171 71W . . . C 3 8.7 -0.98 11.618 1 63.07 ? H171 71W 601 A 1 HETATM 48 H H182 71W . . . C 3 8.463 0.553 13.88 1 73.53 ? H182 71W 601 A 1 HETATM 49 H H181 71W . . . C 3 8.472 1.075 12.418 1 73.53 ? H181 71W 601 A 1 HETATM 50 H H192 71W . . . C 3 10.292 1.819 14.067 1 82.21 ? H192 71W 601 A 1 HETATM 51 H H191 71W . . . C 3 11.012 0.57 13.566 1 82.21 ? H191 71W 601 A 1 HETATM 52 H H201 71W . . . C 3 11.099 1.453 11.345 1 87.01 ? H201 71W 601 A 1 HETATM 53 H H202 71W . . . C 3 10.268 2.669 11.776 1 87.01 ? H202 71W 601 A 1 HETATM 54 H H212 71W . . . C 3 12.711 3.013 11.528 1 88.34 ? H212 71W 601 A 1 HETATM 55 H H211 71W . . . C 3 12.866 2.348 12.899 1 88.34 ? H211 71W 601 A 1 HETATM 56 H H221 71W . . . C 3 11.56 4.874 12.514 1 87.98 ? H221 71W 601 A 1 HETATM 57 H H223 71W . . . C 3 12.877 4.655 13.306 1 87.98 ? H223 71W 601 A 1 HETATM 58 H H222 71W . . . C 3 11.54 4.16 13.866 1 87.98 ? H222 71W 601 A 1 HETATM 59 H H251 71W . . . C 3 8.439 -3.65 10.59 1 43.67 ? H251 71W 601 A 1 HETATM 60 H H261 71W . . . C 3 8.005 -3.938 8.354 1 48.5 ? H261 71W 601 A 1 HETATM 61 H H271 71W . . . C 3 9.612 -3.523 6.759 1 49.77 ? H271 71W 601 A 1 HETATM 62 H H281 71W . . . C 3 11.691 -2.806 7.434 1 50.18 ? H281 71W 601 A 1 HETATM 63 H H291 71W . . . C 3 12.181 -2.501 9.663 1 52.57 ? H291 71W 601 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 63 #