data_5SZ1 # _model_server_result.job_id 5f1tfT3zywTaeu3mKFIDtg _model_server_result.datetime_utc '2024-11-14 17:30:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sz1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5SZ1 # _exptl.entry_id 5SZ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.2 _cell.angle_gamma 90 _cell.entry_id 5SZ1 _cell.length_a 42.215 _cell.length_b 41.284 _cell.length_c 71.873 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SZ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 91 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc2 A NE2 HIS 93 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc3 A ND1 HIS 116 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 H NAP 72E . A 72E 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 169 n n C1 C2 GOL sing 170 n n C1 H11 GOL sing 171 n n C1 H12 GOL sing 172 n n O1 HO1 GOL sing 173 n n C2 O2 GOL sing 174 n n C2 C3 GOL sing 175 n n C2 H2 GOL sing 176 n n O2 HO2 GOL sing 177 n n C3 O3 GOL sing 178 n n C3 H31 GOL sing 179 n n C3 H32 GOL sing 180 n n O3 HO3 GOL sing 181 n n # _atom_sites.entry_id 5SZ1 _atom_sites.fract_transf_matrix[1][1] 0.023688 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005996 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024222 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014352 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 262 ZN ZN . C 3 GOL A 1 302 400 GOL GOL . D 3 GOL A 1 303 401 GOL GOL . E 4 DMS A 1 304 1 DMS DRG . F 4 DMS A 1 305 2 DMS DRG . G 4 DMS A 1 306 3 DMS DRG . H 5 72E A 1 307 1 72E 308 . I 6 HOH A 1 401 160 HOH HOH . I 6 HOH A 2 402 122 HOH HOH . I 6 HOH A 3 403 108 HOH HOH . I 6 HOH A 4 404 218 HOH HOH . I 6 HOH A 5 405 238 HOH HOH . I 6 HOH A 6 406 61 HOH HOH . I 6 HOH A 7 407 220 HOH HOH . I 6 HOH A 8 408 21 HOH HOH . I 6 HOH A 9 409 186 HOH HOH . I 6 HOH A 10 410 169 HOH HOH . I 6 HOH A 11 411 233 HOH HOH . I 6 HOH A 12 412 123 HOH HOH . I 6 HOH A 13 413 228 HOH HOH . I 6 HOH A 14 414 58 HOH HOH . I 6 HOH A 15 415 111 HOH HOH . I 6 HOH A 16 416 208 HOH HOH . I 6 HOH A 17 417 125 HOH HOH . I 6 HOH A 18 418 243 HOH HOH . I 6 HOH A 19 419 49 HOH HOH . I 6 HOH A 20 420 177 HOH HOH . I 6 HOH A 21 421 141 HOH HOH . I 6 HOH A 22 422 132 HOH HOH . I 6 HOH A 23 423 87 HOH HOH . I 6 HOH A 24 424 191 HOH HOH . I 6 HOH A 25 425 94 HOH HOH . I 6 HOH A 26 426 234 HOH HOH . I 6 HOH A 27 427 106 HOH HOH . I 6 HOH A 28 428 130 HOH HOH . I 6 HOH A 29 429 232 HOH HOH . I 6 HOH A 30 430 156 HOH HOH . I 6 HOH A 31 431 76 HOH HOH . I 6 HOH A 32 432 9 HOH HOH . I 6 HOH A 33 433 239 HOH HOH . I 6 HOH A 34 434 119 HOH HOH . I 6 HOH A 35 435 110 HOH HOH . I 6 HOH A 36 436 41 HOH HOH . I 6 HOH A 37 437 100 HOH HOH . I 6 HOH A 38 438 134 HOH HOH . I 6 HOH A 39 439 40 HOH HOH . I 6 HOH A 40 440 140 HOH HOH . I 6 HOH A 41 441 165 HOH HOH . I 6 HOH A 42 442 46 HOH HOH . I 6 HOH A 43 443 66 HOH HOH . I 6 HOH A 44 444 5 HOH HOH . I 6 HOH A 45 445 164 HOH HOH . I 6 HOH A 46 446 195 HOH HOH . I 6 HOH A 47 447 246 HOH HOH . I 6 HOH A 48 448 17 HOH HOH . I 6 HOH A 49 449 180 HOH HOH . I 6 HOH A 50 450 133 HOH HOH . I 6 HOH A 51 451 176 HOH HOH . I 6 HOH A 52 452 78 HOH HOH . I 6 HOH A 53 453 77 HOH HOH . I 6 HOH A 54 454 95 HOH HOH . I 6 HOH A 55 455 8 HOH HOH . I 6 HOH A 56 456 184 HOH HOH . I 6 HOH A 57 457 187 HOH HOH . I 6 HOH A 58 458 88 HOH HOH . I 6 HOH A 59 459 93 HOH HOH . I 6 HOH A 60 460 250 HOH HOH . I 6 HOH A 61 461 159 HOH HOH . I 6 HOH A 62 462 56 HOH HOH . I 6 HOH A 63 463 126 HOH HOH . I 6 HOH A 64 464 225 HOH HOH . I 6 HOH A 65 465 194 HOH HOH . I 6 HOH A 66 466 97 HOH HOH . I 6 HOH A 67 467 145 HOH HOH . I 6 HOH A 68 468 154 HOH HOH . I 6 HOH A 69 469 136 HOH HOH . I 6 HOH A 70 470 226 HOH HOH . I 6 HOH A 71 471 235 HOH HOH . I 6 HOH A 72 472 214 HOH HOH . I 6 HOH A 73 473 4 HOH HOH . I 6 HOH A 74 474 142 HOH HOH . I 6 HOH A 75 475 81 HOH HOH . I 6 HOH A 76 476 182 HOH HOH . I 6 HOH A 77 477 32 HOH HOH . I 6 HOH A 78 478 33 HOH HOH . I 6 HOH A 79 479 80 HOH HOH . I 6 HOH A 80 480 222 HOH HOH . I 6 HOH A 81 481 36 HOH HOH . I 6 HOH A 82 482 28 HOH HOH . I 6 HOH A 83 483 185 HOH HOH . I 6 HOH A 84 484 82 HOH HOH . I 6 HOH A 85 485 117 HOH HOH . I 6 HOH A 86 486 115 HOH HOH . I 6 HOH A 87 487 52 HOH HOH . I 6 HOH A 88 488 201 HOH HOH . I 6 HOH A 89 489 224 HOH HOH . I 6 HOH A 90 490 138 HOH HOH . I 6 HOH A 91 491 149 HOH HOH . I 6 HOH A 92 492 150 HOH HOH . I 6 HOH A 93 493 13 HOH HOH . I 6 HOH A 94 494 60 HOH HOH . I 6 HOH A 95 495 83 HOH HOH . I 6 HOH A 96 496 48 HOH HOH . I 6 HOH A 97 497 198 HOH HOH . I 6 HOH A 98 498 113 HOH HOH . I 6 HOH A 99 499 2 HOH HOH . I 6 HOH A 100 500 6 HOH HOH . I 6 HOH A 101 501 121 HOH HOH . I 6 HOH A 102 502 213 HOH HOH . I 6 HOH A 103 503 10 HOH HOH . I 6 HOH A 104 504 229 HOH HOH . I 6 HOH A 105 505 196 HOH HOH . I 6 HOH A 106 506 11 HOH HOH . I 6 HOH A 107 507 189 HOH HOH . I 6 HOH A 108 508 24 HOH HOH . I 6 HOH A 109 509 152 HOH HOH . I 6 HOH A 110 510 116 HOH HOH . I 6 HOH A 111 511 135 HOH HOH . I 6 HOH A 112 512 23 HOH HOH . I 6 HOH A 113 513 120 HOH HOH . I 6 HOH A 114 514 65 HOH HOH . I 6 HOH A 115 515 79 HOH HOH . I 6 HOH A 116 516 47 HOH HOH . I 6 HOH A 117 517 15 HOH HOH . I 6 HOH A 118 518 92 HOH HOH . I 6 HOH A 119 519 179 HOH HOH . I 6 HOH A 120 520 131 HOH HOH . I 6 HOH A 121 521 25 HOH HOH . I 6 HOH A 122 522 34 HOH HOH . I 6 HOH A 123 523 248 HOH HOH . I 6 HOH A 124 524 85 HOH HOH . I 6 HOH A 125 525 91 HOH HOH . I 6 HOH A 126 526 90 HOH HOH . I 6 HOH A 127 527 144 HOH HOH . I 6 HOH A 128 528 101 HOH HOH . I 6 HOH A 129 529 188 HOH HOH . I 6 HOH A 130 530 104 HOH HOH . I 6 HOH A 131 531 166 HOH HOH . I 6 HOH A 132 532 42 HOH HOH . I 6 HOH A 133 533 18 HOH HOH . I 6 HOH A 134 534 38 HOH HOH . I 6 HOH A 135 535 175 HOH HOH . I 6 HOH A 136 536 157 HOH HOH . I 6 HOH A 137 537 51 HOH HOH . I 6 HOH A 138 538 16 HOH HOH . I 6 HOH A 139 539 155 HOH HOH . I 6 HOH A 140 540 202 HOH HOH . I 6 HOH A 141 541 168 HOH HOH . I 6 HOH A 142 542 173 HOH HOH . I 6 HOH A 143 543 89 HOH HOH . I 6 HOH A 144 544 143 HOH HOH . I 6 HOH A 145 545 153 HOH HOH . I 6 HOH A 146 546 146 HOH HOH . I 6 HOH A 147 547 197 HOH HOH . I 6 HOH A 148 548 54 HOH HOH . I 6 HOH A 149 549 109 HOH HOH . I 6 HOH A 150 550 147 HOH HOH . I 6 HOH A 151 551 45 HOH HOH . I 6 HOH A 152 552 102 HOH HOH . I 6 HOH A 153 553 7 HOH HOH . I 6 HOH A 154 554 107 HOH HOH . I 6 HOH A 155 555 181 HOH HOH . I 6 HOH A 156 556 59 HOH HOH . I 6 HOH A 157 557 137 HOH HOH . I 6 HOH A 158 558 86 HOH HOH . I 6 HOH A 159 559 84 HOH HOH . I 6 HOH A 160 560 231 HOH HOH . I 6 HOH A 161 561 190 HOH HOH . I 6 HOH A 162 562 215 HOH HOH . I 6 HOH A 163 563 103 HOH HOH . I 6 HOH A 164 564 118 HOH HOH . I 6 HOH A 165 565 114 HOH HOH . I 6 HOH A 166 566 203 HOH HOH . I 6 HOH A 167 567 236 HOH HOH . I 6 HOH A 168 568 174 HOH HOH . I 6 HOH A 169 569 96 HOH HOH . I 6 HOH A 170 570 223 HOH HOH . I 6 HOH A 171 571 205 HOH HOH . I 6 HOH A 172 572 105 HOH HOH . I 6 HOH A 173 573 245 HOH HOH . I 6 HOH A 174 574 50 HOH HOH . I 6 HOH A 175 575 67 HOH HOH . I 6 HOH A 176 576 124 HOH HOH . I 6 HOH A 177 577 244 HOH HOH . I 6 HOH A 178 578 19 HOH HOH . I 6 HOH A 179 579 139 HOH HOH . I 6 HOH A 180 580 210 HOH HOH . I 6 HOH A 181 581 29 HOH HOH . I 6 HOH A 182 582 20 HOH HOH . I 6 HOH A 183 583 128 HOH HOH . I 6 HOH A 184 584 30 HOH HOH . I 6 HOH A 185 585 53 HOH HOH . I 6 HOH A 186 586 247 HOH HOH . I 6 HOH A 187 587 127 HOH HOH . I 6 HOH A 188 588 200 HOH HOH . I 6 HOH A 189 589 207 HOH HOH . I 6 HOH A 190 590 43 HOH HOH . I 6 HOH A 191 591 3 HOH HOH . I 6 HOH A 192 592 251 HOH HOH . I 6 HOH A 193 593 35 HOH HOH . I 6 HOH A 194 594 98 HOH HOH . I 6 HOH A 195 595 227 HOH HOH . I 6 HOH A 196 596 163 HOH HOH . I 6 HOH A 197 597 249 HOH HOH . I 6 HOH A 198 598 158 HOH HOH . I 6 HOH A 199 599 217 HOH HOH . I 6 HOH A 200 600 55 HOH HOH . I 6 HOH A 201 601 26 HOH HOH . I 6 HOH A 202 602 27 HOH HOH . I 6 HOH A 203 603 183 HOH HOH . I 6 HOH A 204 604 148 HOH HOH . I 6 HOH A 205 605 70 HOH HOH . I 6 HOH A 206 606 178 HOH HOH . I 6 HOH A 207 607 171 HOH HOH . I 6 HOH A 208 608 211 HOH HOH . I 6 HOH A 209 609 162 HOH HOH . I 6 HOH A 210 610 241 HOH HOH . I 6 HOH A 211 611 112 HOH HOH . I 6 HOH A 212 612 129 HOH HOH . I 6 HOH A 213 613 230 HOH HOH . I 6 HOH A 214 614 172 HOH HOH . I 6 HOH A 215 615 206 HOH HOH . I 6 HOH A 216 616 252 HOH HOH . I 6 HOH A 217 617 237 HOH HOH . I 6 HOH A 218 618 199 HOH HOH . I 6 HOH A 219 619 209 HOH HOH . I 6 HOH A 220 620 37 HOH HOH . I 6 HOH A 221 621 62 HOH HOH . I 6 HOH A 222 622 99 HOH HOH . I 6 HOH A 223 623 240 HOH HOH . I 6 HOH A 224 624 161 HOH HOH . I 6 HOH A 225 625 204 HOH HOH . I 6 HOH A 226 626 167 HOH HOH . I 6 HOH A 227 627 216 HOH HOH . I 6 HOH A 228 628 151 HOH HOH . I 6 HOH A 229 629 64 HOH HOH . I 6 HOH A 230 630 193 HOH HOH . I 6 HOH A 231 631 69 HOH HOH . I 6 HOH A 232 632 219 HOH HOH . I 6 HOH A 233 633 170 HOH HOH . I 6 HOH A 234 634 192 HOH HOH . I 6 HOH A 235 635 242 HOH HOH . I 6 HOH A 236 636 75 HOH HOH . I 6 HOH A 237 637 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -0.927 3.38 81.293 1 29.01 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . C 3 -1.44 4.443 80.504 1 25.3 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . C 3 -1.594 2.05 80.953 1 25.62 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . C 3 -1.656 1.89 79.558 1 20.86 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . C 3 -0.82 0.872 81.54 1 19.41 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . C 3 0.414 0.746 80.871 1 25 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 6 #