data_5SZ7 # _model_server_result.job_id EBQfumyRP7eyUlohBWOMoA _model_server_result.datetime_utc '2024-11-14 06:24:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sz7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 5SZ7 # _exptl.entry_id 5SZ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.67 _cell.angle_gamma 90 _cell.entry_id 5SZ7 _cell.length_a 41.979 _cell.length_b 41.365 _cell.length_c 72.084 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SZ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 91 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc2 A NE2 HIS 93 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc3 A ND1 HIS 116 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 C NAT 72H . A 72H 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 117 n n S C1 DMS sing 118 n n S C2 DMS sing 119 n n C1 H11 DMS sing 120 n n C1 H12 DMS sing 121 n n C1 H13 DMS sing 122 n n C2 H21 DMS sing 123 n n C2 H22 DMS sing 124 n n C2 H23 DMS sing 125 n n # _atom_sites.entry_id 5SZ7 _atom_sites.fract_transf_matrix[1][1] 0.023821 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005793 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024175 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014277 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 262 ZN ZN . C 3 72H A 1 302 1 72H C43 . D 4 DMS A 1 303 1 DMS DRG . E 4 DMS A 1 304 2 DMS DRG . F 4 DMS A 1 305 3 DMS DRG . G 4 DMS A 1 306 4 DMS DRG . H 5 HOH A 1 401 162 HOH HOH . H 5 HOH A 2 402 119 HOH HOH . H 5 HOH A 3 403 102 HOH HOH . H 5 HOH A 4 404 51 HOH HOH . H 5 HOH A 5 405 126 HOH HOH . H 5 HOH A 6 406 56 HOH HOH . H 5 HOH A 7 407 33 HOH HOH . H 5 HOH A 8 408 145 HOH HOH . H 5 HOH A 9 409 16 HOH HOH . H 5 HOH A 10 410 112 HOH HOH . H 5 HOH A 11 411 31 HOH HOH . H 5 HOH A 12 412 72 HOH HOH . H 5 HOH A 13 413 40 HOH HOH . H 5 HOH A 14 414 82 HOH HOH . H 5 HOH A 15 415 66 HOH HOH . H 5 HOH A 16 416 140 HOH HOH . H 5 HOH A 17 417 139 HOH HOH . H 5 HOH A 18 418 67 HOH HOH . H 5 HOH A 19 419 74 HOH HOH . H 5 HOH A 20 420 127 HOH HOH . H 5 HOH A 21 421 45 HOH HOH . H 5 HOH A 22 422 117 HOH HOH . H 5 HOH A 23 423 87 HOH HOH . H 5 HOH A 24 424 113 HOH HOH . H 5 HOH A 25 425 21 HOH HOH . H 5 HOH A 26 426 37 HOH HOH . H 5 HOH A 27 427 63 HOH HOH . H 5 HOH A 28 428 80 HOH HOH . H 5 HOH A 29 429 24 HOH HOH . H 5 HOH A 30 430 47 HOH HOH . H 5 HOH A 31 431 1 HOH HOH . H 5 HOH A 32 432 59 HOH HOH . H 5 HOH A 33 433 156 HOH HOH . H 5 HOH A 34 434 60 HOH HOH . H 5 HOH A 35 435 105 HOH HOH . H 5 HOH A 36 436 96 HOH HOH . H 5 HOH A 37 437 17 HOH HOH . H 5 HOH A 38 438 90 HOH HOH . H 5 HOH A 39 439 6 HOH HOH . H 5 HOH A 40 440 28 HOH HOH . H 5 HOH A 41 441 23 HOH HOH . H 5 HOH A 42 442 97 HOH HOH . H 5 HOH A 43 443 88 HOH HOH . H 5 HOH A 44 444 131 HOH HOH . H 5 HOH A 45 445 53 HOH HOH . H 5 HOH A 46 446 75 HOH HOH . H 5 HOH A 47 447 2 HOH HOH . H 5 HOH A 48 448 3 HOH HOH . H 5 HOH A 49 449 4 HOH HOH . H 5 HOH A 50 450 39 HOH HOH . H 5 HOH A 51 451 160 HOH HOH . H 5 HOH A 52 452 109 HOH HOH . H 5 HOH A 53 453 54 HOH HOH . H 5 HOH A 54 454 29 HOH HOH . H 5 HOH A 55 455 19 HOH HOH . H 5 HOH A 56 456 15 HOH HOH . H 5 HOH A 57 457 43 HOH HOH . H 5 HOH A 58 458 12 HOH HOH . H 5 HOH A 59 459 48 HOH HOH . H 5 HOH A 60 460 100 HOH HOH . H 5 HOH A 61 461 76 HOH HOH . H 5 HOH A 62 462 93 HOH HOH . H 5 HOH A 63 463 44 HOH HOH . H 5 HOH A 64 464 92 HOH HOH . H 5 HOH A 65 465 13 HOH HOH . H 5 HOH A 66 466 34 HOH HOH . H 5 HOH A 67 467 57 HOH HOH . H 5 HOH A 68 468 42 HOH HOH . H 5 HOH A 69 469 133 HOH HOH . H 5 HOH A 70 470 49 HOH HOH . H 5 HOH A 71 471 52 HOH HOH . H 5 HOH A 72 472 46 HOH HOH . H 5 HOH A 73 473 30 HOH HOH . H 5 HOH A 74 474 58 HOH HOH . H 5 HOH A 75 475 150 HOH HOH . H 5 HOH A 76 476 14 HOH HOH . H 5 HOH A 77 477 77 HOH HOH . H 5 HOH A 78 478 36 HOH HOH . H 5 HOH A 79 479 114 HOH HOH . H 5 HOH A 80 480 18 HOH HOH . H 5 HOH A 81 481 22 HOH HOH . H 5 HOH A 82 482 5 HOH HOH . H 5 HOH A 83 483 120 HOH HOH . H 5 HOH A 84 484 64 HOH HOH . H 5 HOH A 85 485 79 HOH HOH . H 5 HOH A 86 486 142 HOH HOH . H 5 HOH A 87 487 159 HOH HOH . H 5 HOH A 88 488 65 HOH HOH . H 5 HOH A 89 489 144 HOH HOH . H 5 HOH A 90 490 27 HOH HOH . H 5 HOH A 91 491 85 HOH HOH . H 5 HOH A 92 492 141 HOH HOH . H 5 HOH A 93 493 101 HOH HOH . H 5 HOH A 94 494 130 HOH HOH . H 5 HOH A 95 495 55 HOH HOH . H 5 HOH A 96 496 26 HOH HOH . H 5 HOH A 97 497 138 HOH HOH . H 5 HOH A 98 498 50 HOH HOH . H 5 HOH A 99 499 106 HOH HOH . H 5 HOH A 100 500 20 HOH HOH . H 5 HOH A 101 501 62 HOH HOH . H 5 HOH A 102 502 108 HOH HOH . H 5 HOH A 103 503 146 HOH HOH . H 5 HOH A 104 504 73 HOH HOH . H 5 HOH A 105 505 122 HOH HOH . H 5 HOH A 106 506 143 HOH HOH . H 5 HOH A 107 507 84 HOH HOH . H 5 HOH A 108 508 71 HOH HOH . H 5 HOH A 109 509 8 HOH HOH . H 5 HOH A 110 510 154 HOH HOH . H 5 HOH A 111 511 134 HOH HOH . H 5 HOH A 112 512 81 HOH HOH . H 5 HOH A 113 513 35 HOH HOH . H 5 HOH A 114 514 155 HOH HOH . H 5 HOH A 115 515 152 HOH HOH . H 5 HOH A 116 516 61 HOH HOH . H 5 HOH A 117 517 10 HOH HOH . H 5 HOH A 118 518 147 HOH HOH . H 5 HOH A 119 519 11 HOH HOH . H 5 HOH A 120 520 118 HOH HOH . H 5 HOH A 121 521 149 HOH HOH . H 5 HOH A 122 522 132 HOH HOH . H 5 HOH A 123 523 121 HOH HOH . H 5 HOH A 124 524 9 HOH HOH . H 5 HOH A 125 525 137 HOH HOH . H 5 HOH A 126 526 99 HOH HOH . H 5 HOH A 127 527 95 HOH HOH . H 5 HOH A 128 528 38 HOH HOH . H 5 HOH A 129 529 94 HOH HOH . H 5 HOH A 130 530 107 HOH HOH . H 5 HOH A 131 531 164 HOH HOH . H 5 HOH A 132 532 104 HOH HOH . H 5 HOH A 133 533 157 HOH HOH . H 5 HOH A 134 534 103 HOH HOH . H 5 HOH A 135 535 163 HOH HOH . H 5 HOH A 136 536 91 HOH HOH . H 5 HOH A 137 537 124 HOH HOH . H 5 HOH A 138 538 148 HOH HOH . H 5 HOH A 139 539 116 HOH HOH . H 5 HOH A 140 540 86 HOH HOH . H 5 HOH A 141 541 69 HOH HOH . H 5 HOH A 142 542 135 HOH HOH . H 5 HOH A 143 543 78 HOH HOH . H 5 HOH A 144 544 153 HOH HOH . H 5 HOH A 145 545 25 HOH HOH . H 5 HOH A 146 546 125 HOH HOH . H 5 HOH A 147 547 89 HOH HOH . H 5 HOH A 148 548 32 HOH HOH . H 5 HOH A 149 549 136 HOH HOH . H 5 HOH A 150 550 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . E 4 9.988 -14.09 76.704 1 70.39 ? S DMS 304 A 1 HETATM 2 O O DMS . . . E 4 9.155 -14.89 75.726 1 56.86 ? O DMS 304 A 1 HETATM 3 C C1 DMS . . . E 4 11.24 -15.112 77.442 1 70.62 ? C1 DMS 304 A 1 HETATM 4 C C2 DMS . . . E 4 10.766 -12.732 75.871 1 66.12 ? C2 DMS 304 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #