data_5SZ9
#
_model_server_result.job_id            mkWl6d95zr_oOkYII6D43g 
_model_server_result.datetime_utc      '2024-10-19 13:20:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5sz9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":401}' 
#
_entry.id    5SZ9 
#
_exptl.entry_id    5SZ9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5SZ9 
_cell.length_a            140.129 
_cell.length_b            140.129 
_cell.length_c            140.129 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5SZ9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        198 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA hexameric 6 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,L 1 1 
B,H,I,J,K,M 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M 3 1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 
3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 50 A CYS 51 1_555 A SG CYS 57 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 216 A CYS 217 1_555 A SG CYS 220 A CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 A SG CYS 258 A CYS 259 1_555 A SG CYS 295 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf4 B SG CYS 50 B CYS 51 1_555 B SG CYS 57 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf5 B SG CYS 216 B CYS 217 1_555 B SG CYS 220 B CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
disulf ? disulf6 B SG CYS 258 B CYS 259 1_555 B SG CYS 295 B CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
covale ? covale1 A ND2 ASN 74 A ASN 75 1_555 C C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale2 B ND2 ASN 74 B ASN 75 1_555 H C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5SZ9 
_atom_sites.fract_transf_matrix[1][1]    0.007136 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007136 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007136 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 401 344 NAG NAG . 
D 3 74Y A 1 402 500 74Y LIG . 
E 4 PEG A 1 403 605 PEG PEG . 
F 4 PEG A 1 404 606 PEG PEG . 
G 4 PEG A 1 405 607 PEG PEG . 
H 2 NAG B 1 401 344 NAG NAG . 
I 3 74Y B 1 402 501 74Y LIG . 
J 5 PGE B 1 403 610 PGE PGE . 
K 4 PEG B 1 404 611 PEG PEG . 
L 6 HOH A 1 501 113 HOH HOH . 
L 6 HOH A 2 502 72 HOH HOH . 
L 6 HOH A 3 503 57 HOH HOH . 
L 6 HOH A 4 504 52 HOH HOH . 
L 6 HOH A 5 505 81 HOH HOH . 
L 6 HOH A 6 506 43 HOH HOH . 
L 6 HOH A 7 507 67 HOH HOH . 
L 6 HOH A 8 508 36 HOH HOH . 
L 6 HOH A 9 509 20 HOH HOH . 
L 6 HOH A 10 510 74 HOH HOH . 
L 6 HOH A 11 511 117 HOH HOH . 
L 6 HOH A 12 512 27 HOH HOH . 
L 6 HOH A 13 513 21 HOH HOH . 
L 6 HOH A 14 514 19 HOH HOH . 
L 6 HOH A 15 515 90 HOH HOH . 
L 6 HOH A 16 516 55 HOH HOH . 
L 6 HOH A 17 517 95 HOH HOH . 
L 6 HOH A 18 518 14 HOH HOH . 
L 6 HOH A 19 519 42 HOH HOH . 
L 6 HOH A 20 520 135 HOH HOH . 
L 6 HOH A 21 521 41 HOH HOH . 
L 6 HOH A 22 522 62 HOH HOH . 
L 6 HOH A 23 523 30 HOH HOH . 
L 6 HOH A 24 524 134 HOH HOH . 
L 6 HOH A 25 525 77 HOH HOH . 
L 6 HOH A 26 526 61 HOH HOH . 
L 6 HOH A 27 527 22 HOH HOH . 
L 6 HOH A 28 528 51 HOH HOH . 
L 6 HOH A 29 529 49 HOH HOH . 
L 6 HOH A 30 530 106 HOH HOH . 
L 6 HOH A 31 531 60 HOH HOH . 
L 6 HOH A 32 532 98 HOH HOH . 
L 6 HOH A 33 533 80 HOH HOH . 
L 6 HOH A 34 534 132 HOH HOH . 
L 6 HOH A 35 535 139 HOH HOH . 
L 6 HOH A 36 536 18 HOH HOH . 
L 6 HOH A 37 537 75 HOH HOH . 
L 6 HOH A 38 538 79 HOH HOH . 
L 6 HOH A 39 539 103 HOH HOH . 
L 6 HOH A 40 540 48 HOH HOH . 
L 6 HOH A 41 541 133 HOH HOH . 
L 6 HOH A 42 542 54 HOH HOH . 
L 6 HOH A 43 543 114 HOH HOH . 
L 6 HOH A 44 544 63 HOH HOH . 
L 6 HOH A 45 545 158 HOH HOH . 
L 6 HOH A 46 546 128 HOH HOH . 
L 6 HOH A 47 547 38 HOH HOH . 
L 6 HOH A 48 548 142 HOH HOH . 
L 6 HOH A 49 549 93 HOH HOH . 
L 6 HOH A 50 550 23 HOH HOH . 
L 6 HOH A 51 551 17 HOH HOH . 
L 6 HOH A 52 552 87 HOH HOH . 
L 6 HOH A 53 553 10 HOH HOH . 
L 6 HOH A 54 554 140 HOH HOH . 
L 6 HOH A 55 555 110 HOH HOH . 
L 6 HOH A 56 556 13 HOH HOH . 
L 6 HOH A 57 557 146 HOH HOH . 
L 6 HOH A 58 558 86 HOH HOH . 
L 6 HOH A 59 559 26 HOH HOH . 
L 6 HOH A 60 560 15 HOH HOH . 
L 6 HOH A 61 561 155 HOH HOH . 
L 6 HOH A 62 562 73 HOH HOH . 
L 6 HOH A 63 563 108 HOH HOH . 
L 6 HOH A 64 564 92 HOH HOH . 
L 6 HOH A 65 565 127 HOH HOH . 
L 6 HOH A 66 566 59 HOH HOH . 
L 6 HOH A 67 567 104 HOH HOH . 
L 6 HOH A 68 568 11 HOH HOH . 
L 6 HOH A 69 569 156 HOH HOH . 
L 6 HOH A 70 570 35 HOH HOH . 
L 6 HOH A 71 571 70 HOH HOH . 
L 6 HOH A 72 572 136 HOH HOH . 
L 6 HOH A 73 573 105 HOH HOH . 
L 6 HOH A 74 574 138 HOH HOH . 
L 6 HOH A 75 575 126 HOH HOH . 
L 6 HOH A 76 576 107 HOH HOH . 
L 6 HOH A 77 577 120 HOH HOH . 
L 6 HOH A 78 578 125 HOH HOH . 
L 6 HOH A 79 579 31 HOH HOH . 
L 6 HOH A 80 580 89 HOH HOH . 
L 6 HOH A 81 581 53 HOH HOH . 
L 6 HOH A 82 582 29 HOH HOH . 
L 6 HOH A 83 583 130 HOH HOH . 
L 6 HOH A 84 584 149 HOH HOH . 
L 6 HOH A 85 585 147 HOH HOH . 
L 6 HOH A 86 586 143 HOH HOH . 
L 6 HOH A 87 587 129 HOH HOH . 
L 6 HOH A 88 588 33 HOH HOH . 
L 6 HOH A 89 589 34 HOH HOH . 
L 6 HOH A 90 590 153 HOH HOH . 
L 6 HOH A 91 591 148 HOH HOH . 
L 6 HOH A 92 592 152 HOH HOH . 
L 6 HOH A 93 593 159 HOH HOH . 
L 6 HOH A 94 594 157 HOH HOH . 
M 6 HOH B 1 501 40 HOH HOH . 
M 6 HOH B 2 502 58 HOH HOH . 
M 6 HOH B 3 503 3 HOH HOH . 
M 6 HOH B 4 504 76 HOH HOH . 
M 6 HOH B 5 505 50 HOH HOH . 
M 6 HOH B 6 506 150 HOH HOH . 
M 6 HOH B 7 507 145 HOH HOH . 
M 6 HOH B 8 508 66 HOH HOH . 
M 6 HOH B 9 509 84 HOH HOH . 
M 6 HOH B 10 510 46 HOH HOH . 
M 6 HOH B 11 511 69 HOH HOH . 
M 6 HOH B 12 512 28 HOH HOH . 
M 6 HOH B 13 513 71 HOH HOH . 
M 6 HOH B 14 514 85 HOH HOH . 
M 6 HOH B 15 515 91 HOH HOH . 
M 6 HOH B 16 516 65 HOH HOH . 
M 6 HOH B 17 517 141 HOH HOH . 
M 6 HOH B 18 518 115 HOH HOH . 
M 6 HOH B 19 519 44 HOH HOH . 
M 6 HOH B 20 520 154 HOH HOH . 
M 6 HOH B 21 521 9 HOH HOH . 
M 6 HOH B 22 522 64 HOH HOH . 
M 6 HOH B 23 523 39 HOH HOH . 
M 6 HOH B 24 524 32 HOH HOH . 
M 6 HOH B 25 525 5 HOH HOH . 
M 6 HOH B 26 526 97 HOH HOH . 
M 6 HOH B 27 527 45 HOH HOH . 
M 6 HOH B 28 528 144 HOH HOH . 
M 6 HOH B 29 529 94 HOH HOH . 
M 6 HOH B 30 530 137 HOH HOH . 
M 6 HOH B 31 531 6 HOH HOH . 
M 6 HOH B 32 532 82 HOH HOH . 
M 6 HOH B 33 533 78 HOH HOH . 
M 6 HOH B 34 534 101 HOH HOH . 
M 6 HOH B 35 535 116 HOH HOH . 
M 6 HOH B 36 536 25 HOH HOH . 
M 6 HOH B 37 537 24 HOH HOH . 
M 6 HOH B 38 538 109 HOH HOH . 
M 6 HOH B 39 539 12 HOH HOH . 
M 6 HOH B 40 540 4 HOH HOH . 
M 6 HOH B 41 541 8 HOH HOH . 
M 6 HOH B 42 542 119 HOH HOH . 
M 6 HOH B 43 543 111 HOH HOH . 
M 6 HOH B 44 544 68 HOH HOH . 
M 6 HOH B 45 545 56 HOH HOH . 
M 6 HOH B 46 546 102 HOH HOH . 
M 6 HOH B 47 547 100 HOH HOH . 
M 6 HOH B 48 548 83 HOH HOH . 
M 6 HOH B 49 549 96 HOH HOH . 
M 6 HOH B 50 550 151 HOH HOH . 
M 6 HOH B 51 551 47 HOH HOH . 
M 6 HOH B 52 552 121 HOH HOH . 
M 6 HOH B 53 553 88 HOH HOH . 
M 6 HOH B 54 554 7 HOH HOH . 
M 6 HOH B 55 555 1 HOH HOH . 
M 6 HOH B 56 556 16 HOH HOH . 
M 6 HOH B 57 557 124 HOH HOH . 
M 6 HOH B 58 558 123 HOH HOH . 
M 6 HOH B 59 559 37 HOH HOH . 
M 6 HOH B 60 560 112 HOH HOH . 
M 6 HOH B 61 561 118 HOH HOH . 
M 6 HOH B 62 562 99 HOH HOH . 
M 6 HOH B 63 563 2 HOH HOH . 
M 6 HOH B 64 564 131 HOH HOH . 
M 6 HOH B 65 565 122 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . H 2 -13.614 -26.077 40.765 1 75.21 ? C1 NAG 401 B 1 
HETATM 2 C C2 NAG . . . H 2 -13.792 -26.22 42.288 1 80.27 ? C2 NAG 401 B 1 
HETATM 3 C C3 NAG . . . H 2 -12.452 -26.172 43.04 1 81.06 ? C3 NAG 401 B 1 
HETATM 4 C C4 NAG . . . H 2 -11.411 -27.117 42.425 1 81.62 ? C4 NAG 401 B 1 
HETATM 5 C C5 NAG . . . H 2 -11.278 -26.85 40.919 1 80.99 ? C5 NAG 401 B 1 
HETATM 6 C C6 NAG . . . H 2 -10.293 -27.809 40.253 1 80.73 ? C6 NAG 401 B 1 
HETATM 7 C C7 NAG . . . H 2 -15.984 -25.395 43.08 1 81.1 ? C7 NAG 401 B 1 
HETATM 8 C C8 NAG . . . H 2 -16.71 -24.185 43.59 1 79.86 ? C8 NAG 401 B 1 
HETATM 9 N N2 NAG . . . H 2 -14.692 -25.195 42.795 1 80.9 ? N2 NAG 401 B 1 
HETATM 10 O O3 NAG . . . H 2 -12.656 -26.508 44.419 1 81.33 ? O3 NAG 401 B 1 
HETATM 11 O O4 NAG . . . H 2 -10.146 -26.954 43.082 1 83.56 ? O4 NAG 401 B 1 
HETATM 12 O O5 NAG . . . H 2 -12.57 -26.957 40.281 1 79.7 ? O5 NAG 401 B 1 
HETATM 13 O O6 NAG . . . H 2 -8.947 -27.423 40.559 1 80.71 ? O6 NAG 401 B 1 
HETATM 14 O O7 NAG . . . H 2 -16.555 -26.47 42.944 1 80.54 ? O7 NAG 401 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           14 
#