data_5SZB # _model_server_result.job_id FfDwgr2fYhL0hH766uk_JQ _model_server_result.datetime_utc '2024-10-28 02:30:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5szb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 5SZB # _exptl.entry_id 5SZB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SZB _cell.length_a 39.321 _cell.length_b 39.321 _cell.length_c 147.571 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SZB _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_466 y-1,x+1,-z+1 0 1 0 1 0 0 0 0 -1 -39.321 39.321 147.571 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C GLY 13 H GLY 13 1_555 B N ALY 14 H ALY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 B C ALY 14 H ALY 14 1_555 B N ALA 15 H ALA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? metalc ? metalc1 A SG CYS 9 A CYS 262 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc2 A SG CYS 12 A CYS 265 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc3 A SG CYS 31 A CYS 284 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc4 A SG CYS 34 A CYS 287 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc5 A ND1 HIS 39 A HIS 292 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc6 A SG CYS 42 A CYS 295 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc7 A SG CYS 60 A CYS 313 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc8 A SG CYS 63 A CYS 316 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc9 A SG CYS 66 A CYS 319 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc10 A SG CYS 69 A CYS 322 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc11 A SG CYS 81 A CYS 334 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc12 A SG CYS 84 A CYS 337 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc13 A ND1 HIS 89 A HIS 342 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc14 A SG CYS 92 A CYS 345 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc15 A SG CYS 107 A CYS 360 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc16 A SG CYS 110 A CYS 363 1_555 F ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5SZB _atom_sites.fract_transf_matrix[1][1] 0.025431 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025431 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006776 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 401 15 ZN ZN . D 3 ZN A 1 402 16 ZN ZN . E 3 ZN A 1 403 17 ZN ZN . F 3 ZN A 1 404 18 ZN ZN . G 4 MPD A 1 405 1 MPD MPD . H 5 HOH A 1 501 143 HOH HOH . H 5 HOH A 2 502 55 HOH HOH . H 5 HOH A 3 503 42 HOH HOH . H 5 HOH A 4 504 91 HOH HOH . H 5 HOH A 5 505 44 HOH HOH . H 5 HOH A 6 506 72 HOH HOH . H 5 HOH A 7 507 31 HOH HOH . H 5 HOH A 8 508 134 HOH HOH . H 5 HOH A 9 509 125 HOH HOH . H 5 HOH A 10 510 48 HOH HOH . H 5 HOH A 11 511 40 HOH HOH . H 5 HOH A 12 512 101 HOH HOH . H 5 HOH A 13 513 83 HOH HOH . H 5 HOH A 14 514 77 HOH HOH . H 5 HOH A 15 515 37 HOH HOH . H 5 HOH A 16 516 38 HOH HOH . H 5 HOH A 17 517 86 HOH HOH . H 5 HOH A 18 518 34 HOH HOH . H 5 HOH A 19 519 99 HOH HOH . H 5 HOH A 20 520 19 HOH HOH . H 5 HOH A 21 521 88 HOH HOH . H 5 HOH A 22 522 64 HOH HOH . H 5 HOH A 23 523 16 HOH HOH . H 5 HOH A 24 524 76 HOH HOH . H 5 HOH A 25 525 115 HOH HOH . H 5 HOH A 26 526 13 HOH HOH . H 5 HOH A 27 527 62 HOH HOH . H 5 HOH A 28 528 26 HOH HOH . H 5 HOH A 29 529 1 HOH HOH . H 5 HOH A 30 530 58 HOH HOH . H 5 HOH A 31 531 3 HOH HOH . H 5 HOH A 32 532 35 HOH HOH . H 5 HOH A 33 533 41 HOH HOH . H 5 HOH A 34 534 142 HOH HOH . H 5 HOH A 35 535 5 HOH HOH . H 5 HOH A 36 536 65 HOH HOH . H 5 HOH A 37 537 103 HOH HOH . H 5 HOH A 38 538 60 HOH HOH . H 5 HOH A 39 539 81 HOH HOH . H 5 HOH A 40 540 140 HOH HOH . H 5 HOH A 41 541 179 HOH HOH . H 5 HOH A 42 542 18 HOH HOH . H 5 HOH A 43 543 21 HOH HOH . H 5 HOH A 44 544 153 HOH HOH . H 5 HOH A 45 545 25 HOH HOH . H 5 HOH A 46 546 96 HOH HOH . H 5 HOH A 47 547 43 HOH HOH . H 5 HOH A 48 548 173 HOH HOH . H 5 HOH A 49 549 2 HOH HOH . H 5 HOH A 50 550 17 HOH HOH . H 5 HOH A 51 551 14 HOH HOH . H 5 HOH A 52 552 11 HOH HOH . H 5 HOH A 53 553 128 HOH HOH . H 5 HOH A 54 554 49 HOH HOH . H 5 HOH A 55 555 80 HOH HOH . H 5 HOH A 56 556 39 HOH HOH . H 5 HOH A 57 557 15 HOH HOH . H 5 HOH A 58 558 9 HOH HOH . H 5 HOH A 59 559 33 HOH HOH . H 5 HOH A 60 560 85 HOH HOH . H 5 HOH A 61 561 139 HOH HOH . H 5 HOH A 62 562 175 HOH HOH . H 5 HOH A 63 563 57 HOH HOH . H 5 HOH A 64 564 136 HOH HOH . H 5 HOH A 65 565 4 HOH HOH . H 5 HOH A 66 566 111 HOH HOH . H 5 HOH A 67 567 157 HOH HOH . H 5 HOH A 68 568 29 HOH HOH . H 5 HOH A 69 569 12 HOH HOH . H 5 HOH A 70 570 70 HOH HOH . H 5 HOH A 71 571 74 HOH HOH . H 5 HOH A 72 572 73 HOH HOH . H 5 HOH A 73 573 126 HOH HOH . H 5 HOH A 74 574 24 HOH HOH . H 5 HOH A 75 575 177 HOH HOH . H 5 HOH A 76 576 54 HOH HOH . H 5 HOH A 77 577 130 HOH HOH . H 5 HOH A 78 578 151 HOH HOH . H 5 HOH A 79 579 63 HOH HOH . H 5 HOH A 80 580 172 HOH HOH . H 5 HOH A 81 581 71 HOH HOH . H 5 HOH A 82 582 90 HOH HOH . H 5 HOH A 83 583 129 HOH HOH . H 5 HOH A 84 584 166 HOH HOH . H 5 HOH A 85 585 98 HOH HOH . H 5 HOH A 86 586 8 HOH HOH . H 5 HOH A 87 587 6 HOH HOH . H 5 HOH A 88 588 180 HOH HOH . H 5 HOH A 89 589 32 HOH HOH . H 5 HOH A 90 590 112 HOH HOH . H 5 HOH A 91 591 23 HOH HOH . H 5 HOH A 92 592 10 HOH HOH . H 5 HOH A 93 593 22 HOH HOH . H 5 HOH A 94 594 110 HOH HOH . H 5 HOH A 95 595 159 HOH HOH . H 5 HOH A 96 596 170 HOH HOH . H 5 HOH A 97 597 145 HOH HOH . H 5 HOH A 98 598 30 HOH HOH . H 5 HOH A 99 599 131 HOH HOH . H 5 HOH A 100 600 160 HOH HOH . H 5 HOH A 101 601 109 HOH HOH . H 5 HOH A 102 602 122 HOH HOH . H 5 HOH A 103 603 119 HOH HOH . H 5 HOH A 104 604 164 HOH HOH . H 5 HOH A 105 605 176 HOH HOH . H 5 HOH A 106 606 61 HOH HOH . H 5 HOH A 107 607 181 HOH HOH . H 5 HOH A 108 608 92 HOH HOH . H 5 HOH A 109 609 51 HOH HOH . H 5 HOH A 110 610 168 HOH HOH . H 5 HOH A 111 611 45 HOH HOH . H 5 HOH A 112 612 95 HOH HOH . H 5 HOH A 113 613 79 HOH HOH . H 5 HOH A 114 614 135 HOH HOH . H 5 HOH A 115 615 158 HOH HOH . H 5 HOH A 116 616 141 HOH HOH . H 5 HOH A 117 617 78 HOH HOH . H 5 HOH A 118 618 20 HOH HOH . H 5 HOH A 119 619 47 HOH HOH . H 5 HOH A 120 620 84 HOH HOH . H 5 HOH A 121 621 121 HOH HOH . H 5 HOH A 122 622 118 HOH HOH . H 5 HOH A 123 623 107 HOH HOH . H 5 HOH A 124 624 28 HOH HOH . H 5 HOH A 125 625 174 HOH HOH . H 5 HOH A 126 626 155 HOH HOH . H 5 HOH A 127 627 50 HOH HOH . H 5 HOH A 128 628 82 HOH HOH . H 5 HOH A 129 629 150 HOH HOH . H 5 HOH A 130 630 106 HOH HOH . H 5 HOH A 131 631 156 HOH HOH . H 5 HOH A 132 632 102 HOH HOH . H 5 HOH A 133 633 52 HOH HOH . H 5 HOH A 134 634 163 HOH HOH . H 5 HOH A 135 635 69 HOH HOH . H 5 HOH A 136 636 147 HOH HOH . H 5 HOH A 137 637 27 HOH HOH . H 5 HOH A 138 638 127 HOH HOH . H 5 HOH A 139 639 36 HOH HOH . H 5 HOH A 140 640 162 HOH HOH . H 5 HOH A 141 641 178 HOH HOH . H 5 HOH A 142 642 169 HOH HOH . H 5 HOH A 143 643 75 HOH HOH . H 5 HOH A 144 644 171 HOH HOH . H 5 HOH A 145 645 105 HOH HOH . H 5 HOH A 146 646 93 HOH HOH . H 5 HOH A 147 647 89 HOH HOH . H 5 HOH A 148 648 7 HOH HOH . H 5 HOH A 149 649 97 HOH HOH . H 5 HOH A 150 650 137 HOH HOH . H 5 HOH A 151 651 116 HOH HOH . H 5 HOH A 152 652 67 HOH HOH . H 5 HOH A 153 653 120 HOH HOH . H 5 HOH A 154 654 154 HOH HOH . H 5 HOH A 155 655 123 HOH HOH . H 5 HOH A 156 656 148 HOH HOH . H 5 HOH A 157 657 104 HOH HOH . H 5 HOH A 158 658 124 HOH HOH . H 5 HOH A 159 659 161 HOH HOH . I 5 HOH H 1 101 56 HOH HOH . I 5 HOH H 2 102 152 HOH HOH . I 5 HOH H 3 103 138 HOH HOH . I 5 HOH H 4 104 87 HOH HOH . I 5 HOH H 5 105 59 HOH HOH . I 5 HOH H 6 106 144 HOH HOH . I 5 HOH H 7 107 46 HOH HOH . I 5 HOH H 8 108 68 HOH HOH . I 5 HOH H 9 109 53 HOH HOH . I 5 HOH H 10 110 114 HOH HOH . I 5 HOH H 11 111 66 HOH HOH . I 5 HOH H 12 112 167 HOH HOH . I 5 HOH H 13 113 146 HOH HOH . I 5 HOH H 14 114 133 HOH HOH . I 5 HOH H 15 115 149 HOH HOH . I 5 HOH H 16 116 165 HOH HOH . I 5 HOH H 17 117 117 HOH HOH . I 5 HOH H 18 118 132 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 13.162 _atom_site.Cartn_y 22.443 _atom_site.Cartn_z 71.76 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 10.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #