data_5SZX # _model_server_result.job_id aPGUcXzftWOaY8VMV5r-xA _model_server_result.datetime_utc '2025-07-31 03:12:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5szx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 5SZX # _exptl.entry_id 5SZX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.25 _cell.angle_gamma 90 _cell.entry_id 5SZX _cell.length_a 95.549 _cell.length_b 26.732 _cell.length_c 99.673 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SZX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DT 7 C DT 7 1_555 A P 5CM 8 C 5CM 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.553 ? covale ? covale2 A O3' 5CM 8 C 5CM 8 1_555 A P DG 9 C DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.542 ? covale ? covale3 B O3' DG 10 D DG 111 1_555 B P 5CM 11 D 5CM 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.601 ? covale ? covale4 B O3' 5CM 11 D 5CM 112 1_555 B P DG 12 D DG 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? hydrog WATSON-CRICK hydrog1 A N3 DC 2 C DC 2 1_555 B N1 DG 18 D DG 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 2 C DC 2 1_555 B O6 DG 18 D DG 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 2 C DC 2 1_555 B N2 DG 18 D DG 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DT 3 C DT 3 1_555 B N1 DA 17 D DA 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O4 DT 3 C DT 3 1_555 B N6 DA 17 D DA 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog6 A N3 DT 4 C DT 4 1_555 B N1 DA 16 D DA 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog7 A O2 DC 5 C DC 5 1_555 B N1 DG 15 D DG 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N1 DA 6 C DA 6 1_555 B N3 DT 14 D DT 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N6 DA 6 C DA 6 1_555 B O4 DT 14 D DT 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N3 DT 7 C DT 7 1_555 B N1 DA 13 D DA 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O4 DT 7 C DT 7 1_555 B N6 DA 13 D DA 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 5CM 8 C 5CM 8 1_555 B N1 DG 12 D DG 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N4 5CM 8 C 5CM 8 1_555 B O6 DG 12 D DG 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O2 5CM 8 C 5CM 8 1_555 B N2 DG 12 D DG 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DG 9 C DG 9 1_555 B N3 5CM 11 D 5CM 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N2 DG 9 C DG 9 1_555 B O2 5CM 11 D 5CM 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O6 DG 9 C DG 9 1_555 B N4 5CM 11 D 5CM 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N3 DC 10 C DC 10 1_555 B N1 DG 10 D DG 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N4 DC 10 C DC 10 1_555 B O6 DG 10 D DG 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O2 DC 10 C DC 10 1_555 B N2 DG 10 D DG 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 DT 11 C DT 11 1_555 B N1 DA 9 D DA 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O4 DT 11 C DT 11 1_555 B N6 DA 9 D DA 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N3 DC 12 C DC 12 1_555 B N1 DG 8 D DG 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N4 DC 12 C DC 12 1_555 B O6 DG 8 D DG 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A O2 DC 12 C DC 12 1_555 B N2 DG 8 D DG 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N1 DA 13 C DA 13 1_555 B N3 DT 7 D DT 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N6 DA 13 C DA 13 1_555 B O4 DT 7 D DT 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N1 DG 14 C DG 14 1_555 B N3 DC 6 D DC 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N2 DG 14 C DG 14 1_555 B O2 DC 6 D DC 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A O6 DG 14 C DG 14 1_555 B N4 DC 6 D DC 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N3 DT 15 C DT 15 1_555 B N1 DA 5 D DA 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O4 DT 15 C DT 15 1_555 B N6 DA 5 D DA 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N1 DG 16 C DG 16 1_555 B N3 DC 4 D DC 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A N2 DG 16 C DG 16 1_555 B O2 DC 4 D DC 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A O6 DG 16 C DG 16 1_555 B N4 DC 4 D DC 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A N3 DC 17 C DC 17 1_555 B N1 DG 3 D DG 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A N4 DC 17 C DC 17 1_555 B O6 DG 3 D DG 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A O2 DC 17 C DC 17 1_555 B N2 DG 3 D DG 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog39 A N3 DT 18 C DT 18 1_555 B N1 DA 2 D DA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 438 n n P O2 PO4 sing 439 n n P O3 PO4 sing 440 n n P O4 PO4 sing 441 n n # _atom_sites.entry_id 5SZX _atom_sites.fract_transf_matrix[1][1] 0.010466 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001331 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.037408 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010114 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 PO4 A 1 301 1 PO4 PO4 . F 5 HOH C 1 101 28 HOH HOH . F 5 HOH C 2 102 47 HOH HOH . G 5 HOH D 1 201 50 HOH HOH . G 5 HOH D 2 202 14 HOH HOH . G 5 HOH D 3 203 46 HOH HOH . G 5 HOH D 4 204 51 HOH HOH . G 5 HOH D 5 205 45 HOH HOH . H 5 HOH A 1 401 54 HOH HOH . H 5 HOH A 2 402 2 HOH HOH . H 5 HOH A 3 403 59 HOH HOH . H 5 HOH A 4 404 6 HOH HOH . I 5 HOH B 1 301 58 HOH HOH . I 5 HOH B 2 302 56 HOH HOH . I 5 HOH B 3 303 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . E 4 120.959 21.284 -69.583 1 94.39 ? P PO4 301 A 1 HETATM 2 O O1 PO4 . . . E 4 120.246 20.563 -70.703 1 92.16 ? O1 PO4 301 A 1 HETATM 3 O O2 PO4 . . . E 4 121.802 22.405 -70.15 1 97.14 ? O2 PO4 301 A 1 HETATM 4 O O3 PO4 . . . E 4 121.83 20.295 -68.845 1 91.9 ? O3 PO4 301 A 1 HETATM 5 O O4 PO4 . . . E 4 119.951 21.878 -68.625 1 95.87 ? O4 PO4 301 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #