data_5T04 # _model_server_result.job_id en-u_JJBn-GuoQPB7xWMrQ _model_server_result.datetime_utc '2024-10-19 22:25:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t04 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1201}' # _entry.id 5T04 # _exptl.entry_id 5T04 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 250.186 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3,3',3''-phosphanetriyltripropanoic acid" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5T04 _cell.length_a 104.19 _cell.length_b 75.71 _cell.length_c 83.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T04 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 110 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 142 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 193 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 225 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.035 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C9 H15 O6 P' _chem_comp.formula_weight 250.186 _chem_comp.id TCE _chem_comp.mon_nstd_flag . _chem_comp.name "3,3',3''-phosphanetriyltripropanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '3-[bis(2-carboxyethyl)phosphanyl]propanoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O16 C14 TCE doub 317 n n C14 O15 TCE sing 318 n n C14 C5 TCE sing 319 n n O15 HO15 TCE sing 320 n n C2 C5 TCE sing 321 n n C5 H5 TCE sing 322 n n C5 H5A TCE sing 323 n n C2 P TCE sing 324 n n C2 H2 TCE sing 325 n n C2 H2A TCE sing 326 n n C1 P TCE sing 327 n n P C3 TCE sing 328 n n C3 C6 TCE sing 329 n n C3 H3 TCE sing 330 n n C3 H3A TCE sing 331 n n C6 C8 TCE sing 332 n n C6 H6 TCE sing 333 n n C6 H6A TCE sing 334 n n O10 C8 TCE doub 335 n n C8 O9 TCE sing 336 n n O9 HO9 TCE sing 337 n n C4 C1 TCE sing 338 n n C1 H1 TCE sing 339 n n C1 H1A TCE sing 340 n n C11 C4 TCE sing 341 n n C4 H4 TCE sing 342 n n C4 H4A TCE sing 343 n n O13 C11 TCE doub 344 n n O12 C11 TCE sing 345 n n O12 HO12 TCE sing 346 n n # _atom_sites.entry_id 5T04 _atom_sites.fract_transf_matrix[1][1] 0.009598 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013208 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012019 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 TCE A 1 1201 1 TCE TCE . D 4 GOL A 1 1202 1 GOL GOL . E 5 PEG A 1 1203 1 PEG PEG . F 5 PEG A 1 1204 2 PEG PEG . G 5 PEG A 1 1205 3 PEG PEG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O16 TCE . . . C 3 258.658 29.759 128.838 1 81.15 ? O16 TCE 1201 A 1 HETATM 2 C C14 TCE . . . C 3 257.721 30.597 128.759 1 81.54 ? C14 TCE 1201 A 1 HETATM 3 O O15 TCE . . . C 3 257.824 31.711 129.336 1 86.5 ? O15 TCE 1201 A 1 HETATM 4 C C5 TCE . . . C 3 256.46 30.261 127.966 1 80.56 ? C5 TCE 1201 A 1 HETATM 5 C C2 TCE . . . C 3 255.805 31.547 127.468 1 83.16 ? C2 TCE 1201 A 1 HETATM 6 P P TCE . . . C 3 254.101 31.16 126.822 1 81.34 ? P TCE 1201 A 1 HETATM 7 C C3 TCE . . . C 3 253.56 29.454 127.339 1 84.63 ? C3 TCE 1201 A 1 HETATM 8 C C6 TCE . . . C 3 252.196 29.48 128.032 1 83.51 ? C6 TCE 1201 A 1 HETATM 9 C C8 TCE . . . C 3 251.643 30.902 128.126 1 84.62 ? C8 TCE 1201 A 1 HETATM 10 O O10 TCE . . . C 3 250.899 31.349 127.215 1 87.06 ? O10 TCE 1201 A 1 HETATM 11 O O9 TCE . . . C 3 251.921 31.629 129.118 1 83.67 ? O9 TCE 1201 A 1 HETATM 12 C C1 TCE . . . C 3 254.061 31.312 124.971 1 81.21 ? C1 TCE 1201 A 1 HETATM 13 C C4 TCE . . . C 3 252.659 31.753 124.568 1 80.25 ? C4 TCE 1201 A 1 HETATM 14 C C11 TCE . . . C 3 252.509 33.254 124.81 1 84.41 ? C11 TCE 1201 A 1 HETATM 15 O O12 TCE . . . C 3 251.598 33.68 125.569 1 84.85 ? O12 TCE 1201 A 1 HETATM 16 O O13 TCE . . . C 3 253.298 34.065 124.256 1 88.82 ? O13 TCE 1201 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #