data_5T0C
#
_model_server_result.job_id            CPkMcaG6qF2TRkpy4dGTsA 
_model_server_result.datetime_utc      '2025-02-05 05:57:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5t0c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"UB","auth_seq_id":501}' 
#
_entry.id    5T0C 
#
_exptl.entry_id    5T0C 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          34 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    64-meric 
_pdbx_struct_assembly.oligomeric_count      64 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 34 NB N N 
? 34 PB N N 
? 34 QB N N 
? 34 RB N N 
? 34 UB N N 
? 34 WB N N 
? 34 XB N N 
? 34 YB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 Y SG CYS 41 AM CYS 41 1_555 Y SG CYS 186 AM CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 EB SG CYS 41 BM CYS 41 1_555 EB SG CYS 186 BM CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc1 I NE2 HIS 115 Ac HIS 115 1_555 MB ZN ZN . Ac ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
metalc ? metalc2 I OD1 ASP 126 Ac ASP 126 1_555 MB ZN ZN . Ac ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? 
metalc ? metalc3 I OD2 ASP 126 Ac ASP 126 1_555 MB ZN ZN . Ac ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? 
metalc ? metalc4 OA NE2 HIS 115 Bc HIS 115 1_555 TB ZN ZN . Bc ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
metalc ? metalc5 OA OD1 ASP 126 Bc ASP 126 1_555 TB ZN ZN . Bc ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? 
metalc ? metalc6 OA OD2 ASP 126 Bc ASP 126 1_555 TB ZN ZN . Bc ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     5T0C 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
MB 33 ZN Ac 1 401 401 ZN ZN . 
NB 34 ATP AA 1 501 434 ATP ATP . 
OB 35 ADP AB 1 501 441 ADP ADP . 
PB 34 ATP AD 1 501 419 ATP ATP . 
QB 34 ATP AE 1 401 390 ATP ATP . 
RB 34 ATP AF 1 501 440 ATP ATP . 
SB 35 ADP AC 1 501 407 ADP ADP . 
TB 33 ZN Bc 1 401 401 ZN ZN . 
UB 34 ATP BA 1 501 434 ATP ATP . 
VB 35 ADP BB 1 501 441 ADP ADP . 
WB 34 ATP BD 1 501 419 ATP ATP . 
XB 34 ATP BE 1 401 390 ATP ATP . 
YB 34 ATP BF 1 501 440 ATP ATP . 
ZB 35 ADP BC 1 501 407 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . UB 34 317.526 190.579 262.327 1 209.07 ? PG ATP 501 BA 1 
HETATM 2 O O1G ATP . . . UB 34 316.156 190.337 261.746 1 203.02 ? O1G ATP 501 BA 1 
HETATM 3 O O2G ATP . . . UB 34 318.203 189.325 262.821 1 214.15 ? O2G ATP 501 BA 1 
HETATM 4 O O3G ATP . . . UB 34 317.604 191.755 263.267 1 211 ? O3G ATP 501 BA 1 
HETATM 5 P PB ATP . . . UB 34 318.254 190.232 259.697 1 202.05 ? PB ATP 501 BA 1 
HETATM 6 O O1B ATP . . . UB 34 316.894 190.557 259.128 1 205.99 ? O1B ATP 501 BA 1 
HETATM 7 O O2B ATP . . . UB 34 318.635 188.798 259.962 1 199.97 ? O2B ATP 501 BA 1 
HETATM 8 O O3B ATP . . . UB 34 318.414 191.037 261.073 1 214.61 ? O3B ATP 501 BA 1 
HETATM 9 P PA ATP . . . UB 34 319.768 189.925 257.455 1 204.75 ? PA ATP 501 BA 1 
HETATM 10 O O1A ATP . . . UB 34 318.566 189.085 257.112 1 213.12 ? O1A ATP 501 BA 1 
HETATM 11 O O2A ATP . . . UB 34 321.068 189.229 257.76 1 207.53 ? O2A ATP 501 BA 1 
HETATM 12 O O3A ATP . . . UB 34 319.349 190.854 258.696 1 200.97 ? O3A ATP 501 BA 1 
HETATM 13 O O5' ATP . . . UB 34 319.988 190.892 256.188 1 199.7 ? O5' ATP 501 BA 1 
HETATM 14 C C5' ATP . . . UB 34 319.433 190.478 254.939 1 198.86 ? C5' ATP 501 BA 1 
HETATM 15 C C4' ATP . . . UB 34 320.511 190.29 253.869 1 194.63 ? C4' ATP 501 BA 1 
HETATM 16 O O4' ATP . . . UB 34 321.003 191.543 253.392 1 188.48 ? O4' ATP 501 BA 1 
HETATM 17 C C3' ATP . . . UB 34 321.704 189.493 254.374 1 193.08 ? C3' ATP 501 BA 1 
HETATM 18 O O3' ATP . . . UB 34 321.768 188.229 253.709 1 194.79 ? O3' ATP 501 BA 1 
HETATM 19 C C2' ATP . . . UB 34 322.928 190.299 253.999 1 186.31 ? C2' ATP 501 BA 1 
HETATM 20 O O2' ATP . . . UB 34 323.796 189.522 253.17 1 181.31 ? O2' ATP 501 BA 1 
HETATM 21 C C1' ATP . . . UB 34 322.42 191.5 253.225 1 185.94 ? C1' ATP 501 BA 1 
HETATM 22 N N9 ATP . . . UB 34 322.967 192.713 253.856 1 189.86 ? N9 ATP 501 BA 1 
HETATM 23 C C8 ATP . . . UB 34 322.227 193.687 254.408 1 187.46 ? C8 ATP 501 BA 1 
HETATM 24 N N7 ATP . . . UB 34 323.014 194.668 254.909 1 188.62 ? N7 ATP 501 BA 1 
HETATM 25 C C5 ATP . . . UB 34 324.287 194.316 254.67 1 189.29 ? C5 ATP 501 BA 1 
HETATM 26 C C6 ATP . . . UB 34 325.61 194.904 254.94 1 184.65 ? C6 ATP 501 BA 1 
HETATM 27 N N6 ATP . . . UB 34 325.722 196.092 255.575 1 183.71 ? N6 ATP 501 BA 1 
HETATM 28 N N1 ATP . . . UB 34 326.692 194.216 254.532 1 183.42 ? N1 ATP 501 BA 1 
HETATM 29 C C2 ATP . . . UB 34 326.585 193.037 253.899 1 189.18 ? C2 ATP 501 BA 1 
HETATM 30 N N3 ATP . . . UB 34 325.418 192.441 253.621 1 198.11 ? N3 ATP 501 BA 1 
HETATM 31 C C4 ATP . . . UB 34 324.253 193.026 253.974 1 195.9 ? C4 ATP 501 BA 1 
#
_model_server_stats.io_time_ms              507 
_model_server_stats.parse_time_ms           79 
_model_server_stats.create_model_time_ms    218 
_model_server_stats.query_time_ms           366 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           31 
#