data_5T0L # _model_server_result.job_id I8eeLahhHsvFdDBdE-CYVg _model_server_result.datetime_utc '2024-11-24 03:24:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t0l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 5T0L # _exptl.entry_id 5T0L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5T0L _cell.length_a 51.277 _cell.length_b 143.983 _cell.length_c 170.214 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T0L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 335 n n PA O2A NDP sing 336 n n PA O5B NDP sing 337 n n PA O3 NDP sing 338 n n O2A HOA2 NDP sing 339 n n O5B C5B NDP sing 340 n n C5B C4B NDP sing 341 n n C5B H51A NDP sing 342 n n C5B H52A NDP sing 343 n n C4B O4B NDP sing 344 n n C4B C3B NDP sing 345 n n C4B H4B NDP sing 346 n n O4B C1B NDP sing 347 n n C3B O3B NDP sing 348 n n C3B C2B NDP sing 349 n n C3B H3B NDP sing 350 n n O3B HO3A NDP sing 351 n n C2B O2B NDP sing 352 n n C2B C1B NDP sing 353 n n C2B H2B NDP sing 354 n n O2B P2B NDP sing 355 n n C1B N9A NDP sing 356 n n C1B H1B NDP sing 357 n n N9A C8A NDP sing 358 n y N9A C4A NDP sing 359 n y C8A N7A NDP doub 360 n y C8A H8A NDP sing 361 n n N7A C5A NDP sing 362 n y C5A C6A NDP sing 363 n y C5A C4A NDP doub 364 n y C6A N6A NDP sing 365 n n C6A N1A NDP doub 366 n y N6A H61A NDP sing 367 n n N6A H62A NDP sing 368 n n N1A C2A NDP sing 369 n y C2A N3A NDP doub 370 n y C2A H2A NDP sing 371 n n N3A C4A NDP sing 372 n y O3 PN NDP sing 373 n n PN O1N NDP doub 374 n n PN O2N NDP sing 375 n n PN O5D NDP sing 376 n n O2N H21N NDP sing 377 n n O5D C5D NDP sing 378 n n C5D C4D NDP sing 379 n n C5D H51N NDP sing 380 n n C5D H52N NDP sing 381 n n C4D O4D NDP sing 382 n n C4D C3D NDP sing 383 n n C4D H4D NDP sing 384 n n O4D C1D NDP sing 385 n n C3D O3D NDP sing 386 n n C3D C2D NDP sing 387 n n C3D H3D NDP sing 388 n n O3D HO3N NDP sing 389 n n C2D O2D NDP sing 390 n n C2D C1D NDP sing 391 n n C2D H2D NDP sing 392 n n O2D HO2N NDP sing 393 n n C1D N1N NDP sing 394 n n C1D H1D NDP sing 395 n n N1N C2N NDP sing 396 n n N1N C6N NDP sing 397 n n C2N C3N NDP doub 398 n n C2N H2N NDP sing 399 n n C3N C7N NDP sing 400 n n C3N C4N NDP sing 401 n n C7N O7N NDP doub 402 n n C7N N7N NDP sing 403 n n N7N H71N NDP sing 404 n n N7N H72N NDP sing 405 n n C4N C5N NDP sing 406 n n C4N H41N NDP sing 407 n n C4N H42N NDP sing 408 n n C5N C6N NDP doub 409 n n C5N H5N NDP sing 410 n n C6N H6N NDP sing 411 n n P2B O1X NDP doub 412 n n P2B O2X NDP sing 413 n n P2B O3X NDP sing 414 n n O2X HOP2 NDP sing 415 n n O3X HOP3 NDP sing 416 n n # _atom_sites.entry_id 5T0L _atom_sites.fract_transf_matrix[1][1] 0.019502 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006945 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005875 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UMP A 1 701 701 UMP UMP . D 3 NDP A 1 702 702 NDP NDP . E 4 CB3 A 1 703 703 CB3 CB3 . F 5 73X A 1 704 1 73X 015 . G 2 UMP B 1 701 701 UMP UMP . H 3 NDP B 1 702 702 NDP NDP . I 4 CB3 B 1 703 703 CB3 CB3 . J 5 73X B 1 704 2 73X 015 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . D 3 30.083 106.133 -76.71 1 72.79 ? PA NDP 702 A 1 HETATM 2 O O1A NDP . . . D 3 30.766 104.802 -76.875 1 71.25 ? O1A NDP 702 A 1 HETATM 3 O O2A NDP . . . D 3 28.581 106.215 -76.567 1 73.39 ? O2A NDP 702 A 1 HETATM 4 O O5B NDP . . . D 3 30.508 107.05 -77.954 1 76.21 ? O5B NDP 702 A 1 HETATM 5 C C5B NDP . . . D 3 29.893 108.318 -78.152 1 79.12 ? C5B NDP 702 A 1 HETATM 6 C C4B NDP . . . D 3 30.168 108.717 -79.586 1 80.82 ? C4B NDP 702 A 1 HETATM 7 O O4B NDP . . . D 3 29.732 107.686 -80.479 1 80.74 ? O4B NDP 702 A 1 HETATM 8 C C3B NDP . . . D 3 29.41 109.967 -79.984 1 82.88 ? C3B NDP 702 A 1 HETATM 9 O O3B NDP . . . D 3 30.184 111.134 -79.691 1 83.42 ? O3B NDP 702 A 1 HETATM 10 C C2B NDP . . . D 3 29.182 109.738 -81.464 1 84.87 ? C2B NDP 702 A 1 HETATM 11 O O2B NDP . . . D 3 30.389 109.979 -82.192 1 85.54 ? O2B NDP 702 A 1 HETATM 12 C C1B NDP . . . D 3 28.908 108.241 -81.51 1 84.9 ? C1B NDP 702 A 1 HETATM 13 N N9A NDP . . . D 3 27.486 107.883 -81.232 1 87.86 ? N9A NDP 702 A 1 HETATM 14 C C8A NDP . . . D 3 27.084 107.023 -80.274 1 88.31 ? C8A NDP 702 A 1 HETATM 15 N N7A NDP . . . D 3 25.735 106.888 -80.251 1 89.06 ? N7A NDP 702 A 1 HETATM 16 C C5A NDP . . . D 3 25.241 107.673 -81.223 1 90.9 ? C5A NDP 702 A 1 HETATM 17 C C6A NDP . . . D 3 23.89 107.999 -81.742 1 92.15 ? C6A NDP 702 A 1 HETATM 18 N N6A NDP . . . D 3 22.781 107.44 -81.2 1 93.19 ? N6A NDP 702 A 1 HETATM 19 N N1A NDP . . . D 3 23.802 108.874 -82.772 1 92.44 ? N1A NDP 702 A 1 HETATM 20 C C2A NDP . . . D 3 24.9 109.437 -83.318 1 93.04 ? C2A NDP 702 A 1 HETATM 21 N N3A NDP . . . D 3 26.155 109.185 -82.896 1 92.25 ? N3A NDP 702 A 1 HETATM 22 C C4A NDP . . . D 3 26.394 108.328 -81.869 1 90.15 ? C4A NDP 702 A 1 HETATM 23 O O3 NDP . . . D 3 30.812 106.914 -75.502 1 73.5 ? O3 NDP 702 A 1 HETATM 24 P PN NDP . . . D 3 30.301 106.922 -73.973 1 70.23 ? PN NDP 702 A 1 HETATM 25 O O1N NDP . . . D 3 30.657 108.259 -73.365 1 69.58 ? O1N NDP 702 A 1 HETATM 26 O O2N NDP . . . D 3 28.883 106.451 -73.938 1 70.93 ? O2N NDP 702 A 1 HETATM 27 O O5D NDP . . . D 3 31.202 105.793 -73.276 1 71.03 ? O5D NDP 702 A 1 HETATM 28 C C5D NDP . . . D 3 32.594 106.038 -73.132 1 75.38 ? C5D NDP 702 A 1 HETATM 29 C C4D NDP . . . D 3 33.136 105.391 -71.868 1 78.07 ? C4D NDP 702 A 1 HETATM 30 O O4D NDP . . . D 3 32.284 104.371 -71.342 1 77.28 ? O4D NDP 702 A 1 HETATM 31 C C3D NDP . . . D 3 34.437 104.694 -72.193 1 78.69 ? C3D NDP 702 A 1 HETATM 32 O O3D NDP . . . D 3 35.515 105.599 -72.027 1 81.43 ? O3D NDP 702 A 1 HETATM 33 C C2D NDP . . . D 3 34.522 103.567 -71.197 1 77.32 ? C2D NDP 702 A 1 HETATM 34 O O2D NDP . . . D 3 35.196 104.027 -70.032 1 77.69 ? O2D NDP 702 A 1 HETATM 35 C C1D NDP . . . D 3 33.079 103.295 -70.824 1 76.41 ? C1D NDP 702 A 1 HETATM 36 N N1N NDP . . . D 3 32.641 102.001 -71.361 1 75.1 ? N1N NDP 702 A 1 HETATM 37 C C2N NDP . . . D 3 32.277 101.05 -70.49 1 74.32 ? C2N NDP 702 A 1 HETATM 38 C C3N NDP . . . D 3 31.841 99.791 -70.9 1 73.12 ? C3N NDP 702 A 1 HETATM 39 C C7N NDP . . . D 3 31.444 98.773 -69.864 1 71.53 ? C7N NDP 702 A 1 HETATM 40 O O7N NDP . . . D 3 31.021 97.679 -70.205 1 71.96 ? O7N NDP 702 A 1 HETATM 41 N N7N NDP . . . D 3 31.556 99.083 -68.575 1 69.69 ? N7N NDP 702 A 1 HETATM 42 C C4N NDP . . . D 3 31.76 99.448 -72.375 1 73 ? C4N NDP 702 A 1 HETATM 43 C C5N NDP . . . D 3 32.187 100.558 -73.22 1 74.13 ? C5N NDP 702 A 1 HETATM 44 C C6N NDP . . . D 3 32.601 101.777 -72.686 1 74.96 ? C6N NDP 702 A 1 HETATM 45 P P2B NDP . . . D 3 30.855 111.405 -82.79 1 86.55 ? P2B NDP 702 A 1 HETATM 46 O O1X NDP . . . D 3 30.673 112.43 -81.697 1 85.74 ? O1X NDP 702 A 1 HETATM 47 O O2X NDP . . . D 3 32.302 111.176 -83.149 1 84.93 ? O2X NDP 702 A 1 HETATM 48 O O3X NDP . . . D 3 29.917 111.612 -83.948 1 87.7 ? O3X NDP 702 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 48 #