data_5T0L
#
_model_server_result.job_id            CwQlkkQQRNYJJ98qdZ_AfA 
_model_server_result.datetime_utc      '2024-11-24 03:53:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5t0l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":702}' 
#
_entry.id    5T0L 
#
_exptl.entry_id    5T0L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5T0L 
_cell.length_a            51.277 
_cell.length_b            143.983 
_cell.length_c            170.214 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5T0L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 335 n n 
PA O2A NDP sing 336 n n 
PA O5B NDP sing 337 n n 
PA O3 NDP sing 338 n n 
O2A HOA2 NDP sing 339 n n 
O5B C5B NDP sing 340 n n 
C5B C4B NDP sing 341 n n 
C5B H51A NDP sing 342 n n 
C5B H52A NDP sing 343 n n 
C4B O4B NDP sing 344 n n 
C4B C3B NDP sing 345 n n 
C4B H4B NDP sing 346 n n 
O4B C1B NDP sing 347 n n 
C3B O3B NDP sing 348 n n 
C3B C2B NDP sing 349 n n 
C3B H3B NDP sing 350 n n 
O3B HO3A NDP sing 351 n n 
C2B O2B NDP sing 352 n n 
C2B C1B NDP sing 353 n n 
C2B H2B NDP sing 354 n n 
O2B P2B NDP sing 355 n n 
C1B N9A NDP sing 356 n n 
C1B H1B NDP sing 357 n n 
N9A C8A NDP sing 358 n y 
N9A C4A NDP sing 359 n y 
C8A N7A NDP doub 360 n y 
C8A H8A NDP sing 361 n n 
N7A C5A NDP sing 362 n y 
C5A C6A NDP sing 363 n y 
C5A C4A NDP doub 364 n y 
C6A N6A NDP sing 365 n n 
C6A N1A NDP doub 366 n y 
N6A H61A NDP sing 367 n n 
N6A H62A NDP sing 368 n n 
N1A C2A NDP sing 369 n y 
C2A N3A NDP doub 370 n y 
C2A H2A NDP sing 371 n n 
N3A C4A NDP sing 372 n y 
O3 PN NDP sing 373 n n 
PN O1N NDP doub 374 n n 
PN O2N NDP sing 375 n n 
PN O5D NDP sing 376 n n 
O2N H21N NDP sing 377 n n 
O5D C5D NDP sing 378 n n 
C5D C4D NDP sing 379 n n 
C5D H51N NDP sing 380 n n 
C5D H52N NDP sing 381 n n 
C4D O4D NDP sing 382 n n 
C4D C3D NDP sing 383 n n 
C4D H4D NDP sing 384 n n 
O4D C1D NDP sing 385 n n 
C3D O3D NDP sing 386 n n 
C3D C2D NDP sing 387 n n 
C3D H3D NDP sing 388 n n 
O3D HO3N NDP sing 389 n n 
C2D O2D NDP sing 390 n n 
C2D C1D NDP sing 391 n n 
C2D H2D NDP sing 392 n n 
O2D HO2N NDP sing 393 n n 
C1D N1N NDP sing 394 n n 
C1D H1D NDP sing 395 n n 
N1N C2N NDP sing 396 n n 
N1N C6N NDP sing 397 n n 
C2N C3N NDP doub 398 n n 
C2N H2N NDP sing 399 n n 
C3N C7N NDP sing 400 n n 
C3N C4N NDP sing 401 n n 
C7N O7N NDP doub 402 n n 
C7N N7N NDP sing 403 n n 
N7N H71N NDP sing 404 n n 
N7N H72N NDP sing 405 n n 
C4N C5N NDP sing 406 n n 
C4N H41N NDP sing 407 n n 
C4N H42N NDP sing 408 n n 
C5N C6N NDP doub 409 n n 
C5N H5N NDP sing 410 n n 
C6N H6N NDP sing 411 n n 
P2B O1X NDP doub 412 n n 
P2B O2X NDP sing 413 n n 
P2B O3X NDP sing 414 n n 
O2X HOP2 NDP sing 415 n n 
O3X HOP3 NDP sing 416 n n 
#
_atom_sites.entry_id                     5T0L 
_atom_sites.fract_transf_matrix[1][1]    0.019502 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006945 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005875 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 UMP A 1 701 701 UMP UMP . 
D 3 NDP A 1 702 702 NDP NDP . 
E 4 CB3 A 1 703 703 CB3 CB3 . 
F 5 73X A 1 704 1 73X 015 . 
G 2 UMP B 1 701 701 UMP UMP . 
H 3 NDP B 1 702 702 NDP NDP . 
I 4 CB3 B 1 703 703 CB3 CB3 . 
J 5 73X B 1 704 2 73X 015 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . H 3 3.569 26.884 -68.722 1 74.95 ? PA NDP 702 B 1 
HETATM 2 O O1A NDP . . . H 3 2.713 28.129 -68.719 1 72.21 ? O1A NDP 702 B 1 
HETATM 3 O O2A NDP . . . H 3 4.909 26.85 -69.428 1 73.77 ? O2A NDP 702 B 1 
HETATM 4 O O5B NDP . . . H 3 2.646 25.686 -69.258 1 79.72 ? O5B NDP 702 B 1 
HETATM 5 C C5B NDP . . . H 3 3.095 24.687 -70.161 1 84.09 ? C5B NDP 702 B 1 
HETATM 6 C C4B NDP . . . H 3 1.961 24.517 -71.158 1 88.3 ? C4B NDP 702 B 1 
HETATM 7 O O4B NDP . . . H 3 1.926 25.636 -72.056 1 86.6 ? O4B NDP 702 B 1 
HETATM 8 C C3B NDP . . . H 3 2.134 23.275 -72.015 1 91.23 ? C3B NDP 702 B 1 
HETATM 9 O O3B NDP . . . H 3 1.402 22.17 -71.477 1 94.46 ? O3B NDP 702 B 1 
HETATM 10 C C2B NDP . . . H 3 1.649 23.73 -73.381 1 92.14 ? C2B NDP 702 B 1 
HETATM 11 O O2B NDP . . . H 3 0.224 23.623 -73.506 1 94.4 ? O2B NDP 702 B 1 
HETATM 12 C C1B NDP . . . H 3 2.085 25.187 -73.403 1 89.16 ? C1B NDP 702 B 1 
HETATM 13 N N9A NDP . . . H 3 3.527 25.227 -73.766 1 89.29 ? N9A NDP 702 B 1 
HETATM 14 C C8A NDP . . . H 3 4.559 25.423 -72.917 1 89.01 ? C8A NDP 702 B 1 
HETATM 15 N N7A NDP . . . H 3 5.754 25.384 -73.55 1 88.87 ? N7A NDP 702 B 1 
HETATM 16 C C5A NDP . . . H 3 5.497 25.157 -74.846 1 90.22 ? C5A NDP 702 B 1 
HETATM 17 C C6A NDP . . . H 3 6.306 25 -76.078 1 91.33 ? C6A NDP 702 B 1 
HETATM 18 N N6A NDP . . . H 3 7.658 25.085 -76.04 1 93.04 ? N6A NDP 702 B 1 
HETATM 19 N N1A NDP . . . H 3 5.649 24.769 -77.241 1 89.74 ? N1A NDP 702 B 1 
HETATM 20 C C2A NDP . . . H 3 4.303 24.682 -77.297 1 89.05 ? C2A NDP 702 B 1 
HETATM 21 N N3A NDP . . . H 3 3.506 24.813 -76.219 1 90.38 ? N3A NDP 702 B 1 
HETATM 22 C C4A NDP . . . H 3 4.032 25.05 -74.988 1 90.69 ? C4A NDP 702 B 1 
HETATM 23 O O3 NDP . . . H 3 3.674 26.394 -67.191 1 75.16 ? O3 NDP 702 B 1 
HETATM 24 P PN NDP . . . H 3 4.996 26.282 -66.271 1 72.1 ? PN NDP 702 B 1 
HETATM 25 O O1N NDP . . . H 3 4.739 25.164 -65.29 1 73.52 ? O1N NDP 702 B 1 
HETATM 26 O O2N NDP . . . H 3 6.261 26.26 -67.099 1 70.79 ? O2N NDP 702 B 1 
HETATM 27 O O5D NDP . . . H 3 4.91 27.674 -65.464 1 72 ? O5D NDP 702 B 1 
HETATM 28 C C5D NDP . . . H 3 3.732 28.025 -64.73 1 72.87 ? C5D NDP 702 B 1 
HETATM 29 C C4D NDP . . . H 3 4.1 28.15 -63.254 1 74.59 ? C4D NDP 702 B 1 
HETATM 30 O O4D NDP . . . H 3 5.056 29.197 -63.052 1 76.11 ? O4D NDP 702 B 1 
HETATM 31 C C3D NDP . . . H 3 2.92 28.475 -62.36 1 74.27 ? C3D NDP 702 B 1 
HETATM 32 O O3D NDP . . . H 3 3.136 27.715 -61.172 1 72.75 ? O3D NDP 702 B 1 
HETATM 33 C C2D NDP . . . H 3 3.036 29.958 -62.042 1 75.36 ? C2D NDP 702 B 1 
HETATM 34 O O2D NDP . . . H 3 2.67 30.241 -60.685 1 73.82 ? O2D NDP 702 B 1 
HETATM 35 C C1D NDP . . . H 3 4.51 30.271 -62.273 1 77.02 ? C1D NDP 702 B 1 
HETATM 36 N N1N NDP . . . H 3 4.724 31.538 -62.984 1 77.57 ? N1N NDP 702 B 1 
HETATM 37 C C2N NDP . . . H 3 5.501 32.473 -62.417 1 77.09 ? C2N NDP 702 B 1 
HETATM 38 C C3N NDP . . . H 3 5.763 33.691 -63.039 1 76.86 ? C3N NDP 702 B 1 
HETATM 39 C C7N NDP . . . H 3 6.632 34.71 -62.358 1 77.85 ? C7N NDP 702 B 1 
HETATM 40 O O7N NDP . . . H 3 7.386 35.404 -63.023 1 79.76 ? O7N NDP 702 B 1 
HETATM 41 N N7N NDP . . . H 3 6.557 34.839 -61.034 1 78.99 ? N7N NDP 702 B 1 
HETATM 42 C C4N NDP . . . H 3 5.177 34.004 -64.401 1 76.91 ? C4N NDP 702 B 1 
HETATM 43 C C5N NDP . . . H 3 4.355 32.911 -64.911 1 78.12 ? C5N NDP 702 B 1 
HETATM 44 C C6N NDP . . . H 3 4.168 31.735 -64.191 1 77.84 ? C6N NDP 702 B 1 
HETATM 45 P P2B NDP . . . H 3 -0.49 22.223 -73.887 1 95.35 ? P2B NDP 702 B 1 
HETATM 46 O O1X NDP . . . H 3 -0.608 21.472 -72.585 1 95.02 ? O1X NDP 702 B 1 
HETATM 47 O O2X NDP . . . H 3 -1.839 22.59 -74.443 1 95.76 ? O2X NDP 702 B 1 
HETATM 48 O O3X NDP . . . H 3 0.461 21.592 -74.881 1 93.91 ? O3X NDP 702 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           357 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           48 
#