data_5T0L # _model_server_result.job_id sXJizD_YGfBdGiklc7tY5w _model_server_result.datetime_utc '2024-10-12 07:27:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t0l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":703}' # _entry.id 5T0L # _exptl.entry_id 5T0L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 477.469 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '10-PROPARGYL-5,8-DIDEAZAFOLIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5T0L _cell.length_a 51.277 _cell.length_b 143.983 _cell.length_c 170.214 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T0L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 I N N # _chem_comp.formula 'C24 H23 N5 O6' _chem_comp.formula_weight 477.469 _chem_comp.id CB3 _chem_comp.mon_nstd_flag . _chem_comp.name '10-PROPARGYL-5,8-DIDEAZAFOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CB3 sing 110 n y N1 C8A CB3 sing 111 n y N1 HN1 CB3 sing 112 n n C2 NA2 CB3 sing 113 n n C2 N3 CB3 doub 114 n y NA2 HN21 CB3 sing 115 n n NA2 HN22 CB3 sing 116 n n N3 C4 CB3 sing 117 n y C4 O4 CB3 doub 118 n n C4 C4A CB3 sing 119 n y C4A C5 CB3 doub 120 n y C4A C8A CB3 sing 121 n y C5 C6 CB3 sing 122 n y C5 H5 CB3 sing 123 n n C6 C7 CB3 doub 124 n y C6 C9 CB3 sing 125 n n C7 C8 CB3 sing 126 n y C7 H7 CB3 sing 127 n n C8 C8A CB3 doub 128 n y C8 H8 CB3 sing 129 n n C9 N10 CB3 sing 130 n n C9 H91 CB3 sing 131 n n C9 H92 CB3 sing 132 n n N10 C14 CB3 sing 133 n n N10 CP1 CB3 sing 134 n n C11 C12 CB3 doub 135 n y C11 C16 CB3 sing 136 n y C11 C CB3 sing 137 n n C12 C13 CB3 sing 138 n y C12 H12 CB3 sing 139 n n C13 C14 CB3 doub 140 n y C13 H13 CB3 sing 141 n n C14 C15 CB3 sing 142 n y C15 C16 CB3 doub 143 n y C15 H15 CB3 sing 144 n n C16 H16 CB3 sing 145 n n C O CB3 doub 146 n n C N CB3 sing 147 n n N CA CB3 sing 148 n n N HN CB3 sing 149 n n CA CB CB3 sing 150 n n CA CT CB3 sing 151 n n CA HA CB3 sing 152 n n CB CG CB3 sing 153 n n CB HB1 CB3 sing 154 n n CB HB2 CB3 sing 155 n n CG CD CB3 sing 156 n n CG HG1 CB3 sing 157 n n CG HG2 CB3 sing 158 n n CD OE1 CB3 doub 159 n n CD OE2 CB3 sing 160 n n OE2 HOE2 CB3 sing 161 n n CT O1 CB3 doub 162 n n CT O2 CB3 sing 163 n n O2 HO2 CB3 sing 164 n n CP1 CP2 CB3 sing 165 n n CP1 HP11 CB3 sing 166 n n CP1 HP12 CB3 sing 167 n n CP2 CP3 CB3 trip 168 n n CP3 HP3 CB3 sing 169 n n # _atom_sites.entry_id 5T0L _atom_sites.fract_transf_matrix[1][1] 0.019502 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006945 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005875 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UMP A 1 701 701 UMP UMP . D 3 NDP A 1 702 702 NDP NDP . E 4 CB3 A 1 703 703 CB3 CB3 . F 5 73X A 1 704 1 73X 015 . G 2 UMP B 1 701 701 UMP UMP . H 3 NDP B 1 702 702 NDP NDP . I 4 CB3 B 1 703 703 CB3 CB3 . J 5 73X B 1 704 2 73X 015 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CB3 . . . E 4 15.198 81.557 -31.351 0.5 21.29 ? N1 CB3 703 A 1 HETATM 2 C C2 CB3 . . . E 4 14.518 81.291 -32.481 0.5 21.38 ? C2 CB3 703 A 1 HETATM 3 N NA2 CB3 . . . E 4 13.297 80.708 -32.384 0.5 21.19 ? NA2 CB3 703 A 1 HETATM 4 N N3 CB3 . . . E 4 15.006 81.577 -33.713 0.5 21.1 ? N3 CB3 703 A 1 HETATM 5 C C4 CB3 . . . E 4 16.209 82.152 -33.893 0.5 20.84 ? C4 CB3 703 A 1 HETATM 6 O O4 CB3 . . . E 4 16.611 82.396 -35.048 0.5 21.12 ? O4 CB3 703 A 1 HETATM 7 C C4A CB3 . . . E 4 17.01 82.477 -32.685 0.5 20.85 ? C4A CB3 703 A 1 HETATM 8 C C5 CB3 . . . E 4 18.265 83.075 -32.725 0.5 20.86 ? C5 CB3 703 A 1 HETATM 9 C C6 CB3 . . . E 4 18.921 83.328 -31.52 0.5 21.15 ? C6 CB3 703 A 1 HETATM 10 C C7 CB3 . . . E 4 18.351 82.999 -30.29 0.5 21.01 ? C7 CB3 703 A 1 HETATM 11 C C8 CB3 . . . E 4 17.099 82.4 -30.206 0.5 20.85 ? C8 CB3 703 A 1 HETATM 12 C C8A CB3 . . . E 4 16.406 82.129 -31.377 0.5 20.96 ? C8A CB3 703 A 1 HETATM 13 C C9 CB3 . . . E 4 20.282 83.974 -31.527 0.5 21.64 ? C9 CB3 703 A 1 HETATM 14 N N10 CB3 . . . E 4 20.533 84.551 -32.836 0.5 22.14 ? N10 CB3 703 A 1 HETATM 15 C C11 CB3 . . . E 4 18.03 87.464 -34.476 0.5 23.31 ? C11 CB3 703 A 1 HETATM 16 C C12 CB3 . . . E 4 19.139 87.018 -35.189 0.5 22.95 ? C12 CB3 703 A 1 HETATM 17 C C13 CB3 . . . E 4 19.971 86.044 -34.645 0.5 22.55 ? C13 CB3 703 A 1 HETATM 18 C C14 CB3 . . . E 4 19.692 85.518 -33.391 0.5 22.47 ? C14 CB3 703 A 1 HETATM 19 C C15 CB3 . . . E 4 18.583 85.96 -32.681 0.5 23.02 ? C15 CB3 703 A 1 HETATM 20 C C16 CB3 . . . E 4 17.754 86.935 -33.224 0.5 23.32 ? C16 CB3 703 A 1 HETATM 21 C C CB3 . . . E 4 17.117 88.507 -35.048 0.5 23.95 ? C CB3 703 A 1 HETATM 22 O O CB3 . . . E 4 16.33 89.082 -34.309 0.5 23.94 ? O CB3 703 A 1 HETATM 23 N N CB3 . . . E 4 17.182 88.774 -36.351 0.5 24.83 ? N CB3 703 A 1 HETATM 24 C CA CB3 . . . E 4 18.119 89.74 -36.888 0.5 25.65 ? CA CB3 703 A 1 HETATM 25 C CB CB3 . . . E 4 18.253 89.539 -38.398 0.5 26.35 ? CB CB3 703 A 1 HETATM 26 C CG CB3 . . . E 4 19.536 88.772 -38.722 0.5 27.45 ? CG CB3 703 A 1 HETATM 27 C CD CB3 . . . E 4 19.298 87.762 -39.822 0.5 28.49 ? CD CB3 703 A 1 HETATM 28 O OE1 CB3 . . . E 4 19.398 86.541 -39.542 0.5 28.86 ? OE1 CB3 703 A 1 HETATM 29 O OE2 CB3 . . . E 4 19.02 88.187 -40.97 0.5 29.43 ? OE2 CB3 703 A 1 HETATM 30 C CT CB3 . . . E 4 17.689 91.147 -36.58 0.5 25.92 ? CT CB3 703 A 1 HETATM 31 O O1 CB3 . . . E 4 17.331 91.434 -35.414 0.5 25.86 ? O1 CB3 703 A 1 HETATM 32 O O2 CB3 . . . E 4 17.702 91.986 -37.508 0.5 26.73 ? O2 CB3 703 A 1 HETATM 33 C CP1 CB3 . . . E 4 21.697 84.125 -33.573 0.5 22.39 ? CP1 CB3 703 A 1 HETATM 34 C CP2 CB3 . . . E 4 21.237 83.236 -34.641 0.5 22.59 ? CP2 CB3 703 A 1 HETATM 35 C CP3 CB3 . . . E 4 20.842 82.488 -35.595 0.5 22.85 ? CP3 CB3 703 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 39 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 35 #