data_5T0W # _model_server_result.job_id CE1ZFtZ3yLwOxbIi9win-Q _model_server_result.datetime_utc '2024-12-26 23:51:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t0w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 5T0W # _exptl.entry_id 5T0W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.209 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description ARGININE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5T0W _cell.length_a 47.03 _cell.length_b 68.88 _cell.length_c 318.63 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T0W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G 3 1 D,H,K 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C6 H15 N4 O2 1' _chem_comp.formula_weight 175.209 _chem_comp.id ARG _chem_comp.mon_nstd_flag y _chem_comp.name ARGININE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ARG sing 13 n n N H ARG sing 14 n n N H2 ARG sing 15 n n CA C ARG sing 16 n n CA CB ARG sing 17 n n CA HA ARG sing 18 n n C O ARG doub 19 n n C OXT ARG sing 20 n n CB CG ARG sing 21 n n CB HB2 ARG sing 22 n n CB HB3 ARG sing 23 n n CG CD ARG sing 24 n n CG HG2 ARG sing 25 n n CG HG3 ARG sing 26 n n CD NE ARG sing 27 n n CD HD2 ARG sing 28 n n CD HD3 ARG sing 29 n n NE CZ ARG sing 30 n n NE HE ARG sing 31 n n CZ NH1 ARG sing 32 n n CZ NH2 ARG doub 33 n n NH1 HH11 ARG sing 34 n n NH1 HH12 ARG sing 35 n n NH2 HH21 ARG sing 36 n n NH2 HH22 ARG sing 37 n n OXT HXT ARG sing 38 n n # _atom_sites.entry_id 5T0W _atom_sites.fract_transf_matrix[1][1] 0.021263 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014518 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003138 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ARG A 1 301 250 ARG ARG . F 2 ARG B 1 301 251 ARG ARG . G 2 ARG C 1 301 252 ARG ARG . H 2 ARG D 1 301 253 ARG ARG . I 3 HOH A 1 401 16 HOH HOH . I 3 HOH A 2 402 13 HOH HOH . I 3 HOH A 3 403 2 HOH HOH . I 3 HOH A 4 404 17 HOH HOH . I 3 HOH A 5 405 3 HOH HOH . I 3 HOH A 6 406 8 HOH HOH . I 3 HOH A 7 407 9 HOH HOH . I 3 HOH A 8 408 10 HOH HOH . I 3 HOH A 9 409 1 HOH HOH . I 3 HOH A 10 410 19 HOH HOH . I 3 HOH A 11 411 11 HOH HOH . J 3 HOH B 1 401 12 HOH HOH . J 3 HOH B 2 402 6 HOH HOH . J 3 HOH B 3 403 7 HOH HOH . K 3 HOH D 1 401 18 HOH HOH . K 3 HOH D 2 402 21 HOH HOH . K 3 HOH D 3 403 15 HOH HOH . K 3 HOH D 4 404 20 HOH HOH . K 3 HOH D 5 405 5 HOH HOH . K 3 HOH D 6 406 14 HOH HOH . K 3 HOH D 7 407 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ARG . . . H 2 -27.091 45.169 -30.927 1 17.1 ? N ARG 301 D 1 HETATM 2 C CA ARG . . . H 2 -25.864 44.634 -30.277 1 17.21 ? CA ARG 301 D 1 HETATM 3 C C ARG . . . H 2 -25.008 43.912 -31.289 1 17.56 ? C ARG 301 D 1 HETATM 4 O O ARG . . . H 2 -25.57 43.501 -32.31 1 17.88 ? O ARG 301 D 1 HETATM 5 C CB ARG . . . H 2 -26.238 43.673 -29.176 1 17.44 ? CB ARG 301 D 1 HETATM 6 C CG ARG . . . H 2 -27.151 42.57 -29.611 1 17.63 ? CG ARG 301 D 1 HETATM 7 C CD ARG . . . H 2 -27.086 41.447 -28.615 1 18.52 ? CD ARG 301 D 1 HETATM 8 N NE ARG . . . H 2 -28.054 40.406 -28.934 1 19.71 ? NE ARG 301 D 1 HETATM 9 C CZ ARG . . . H 2 -28.409 39.417 -28.107 1 18.96 ? CZ ARG 301 D 1 HETATM 10 N NH1 ARG . . . H 2 -27.88 39.328 -26.888 1 18.46 ? NH1 ARG 301 D 1 HETATM 11 N NH2 ARG . . . H 2 -29.286 38.504 -28.515 1 18.08 ? NH2 ARG 301 D 1 HETATM 12 O OXT ARG . . . H 2 -23.786 43.741 -31.113 1 17.3 ? OXT ARG 301 D 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #