data_5T1A # _model_server_result.job_id S9zBeo2-wcgNIUMqYxoODg _model_server_result.datetime_utc '2025-03-03 08:38:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t1a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 5T1A # _exptl.entry_id 5T1A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 491.592 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S)-1-{(1S,2R,4R)-4-[methyl(propan-2-yl)amino]-2-propylcyclohexyl}-3-{[6-(trifluoromethyl)quinazolin-4-yl]amino}pyrrolidin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5T1A _cell.length_a 59.23 _cell.length_b 64.69 _cell.length_c 169.98 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T1A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 123 A CYS 113 1_555 A SG CYS 200 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A C LYS 190 A LYS 180 1_555 A N YCM 191 A YCM 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C YCM 191 A YCM 181 1_555 A N GLN 192 A GLN 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A NE2 HIS 154 A HIS 144 1_555 I ZN ZN . A ZN 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc2 A OE2 GLU 409 A GLU 238 1_555 I ZN ZN . A ZN 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? metalc ? metalc3 A OE2 GLU 247 A GLU 1005 1_555 I ZN ZN . A ZN 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc4 I ZN ZN . A ZN 1208 1_555 J O HOH . A HOH 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? # _chem_comp.formula 'C26 H36 F3 N5 O' _chem_comp.formula_weight 491.592 _chem_comp.id 73R _chem_comp.mon_nstd_flag . _chem_comp.name (3S)-1-{(1S,2R,4R)-4-[methyl(propan-2-yl)amino]-2-propylcyclohexyl}-3-{[6-(trifluoromethyl)quinazolin-4-yl]amino}pyrrolidin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C9 73R doub 1 n y C8 C1 73R sing 2 n y N6 C1 73R doub 3 n y N6 C5 73R sing 4 n y C9 C12 73R sing 5 n y C1 C2 73R sing 6 n y C5 N4 73R doub 7 n y C37 C36 73R sing 8 n n C36 C35 73R sing 9 n n F32 CAP 73R sing 10 n n C12 CAP 73R sing 11 n n C12 C13 73R doub 12 n y N4 C3 73R sing 13 n y C2 C3 73R doub 14 n y C2 C13 73R sing 15 n y C35 C31 73R sing 16 n n CAP F33 73R sing 17 n n CAP F34 73R sing 18 n n C3 N7 73R sing 19 n n C30 C31 73R sing 20 n n C30 C29 73R sing 21 n n C31 C26 73R sing 22 n n C42 C40 73R sing 23 n n N7 C14 73R sing 24 n n C18 C17 73R sing 25 n n C18 C14 73R sing 26 n n N38 C29 73R sing 27 n n N38 C40 73R sing 28 n n N38 C39 73R sing 29 n n C29 C28 73R sing 30 n n C40 C41 73R sing 31 n n C17 N16 73R sing 32 n n N16 C26 73R sing 33 n n N16 C15 73R sing 34 n n C26 C27 73R sing 35 n n C15 C14 73R sing 36 n n C15 O24 73R doub 37 n n C28 C27 73R sing 38 n n C5 H1 73R sing 39 n n C8 H2 73R sing 40 n n C9 H3 73R sing 41 n n C13 H4 73R sing 42 n n C14 H5 73R sing 43 n n C17 H6 73R sing 44 n n C17 H7 73R sing 45 n n C18 H8 73R sing 46 n n C18 H9 73R sing 47 n n N7 H10 73R sing 48 n n C26 H11 73R sing 49 n n C27 H12 73R sing 50 n n C27 H13 73R sing 51 n n C28 H14 73R sing 52 n n C28 H15 73R sing 53 n n C29 H16 73R sing 54 n n C30 H17 73R sing 55 n n C30 H18 73R sing 56 n n C31 H19 73R sing 57 n n C35 H20 73R sing 58 n n C35 H21 73R sing 59 n n C36 H22 73R sing 60 n n C36 H23 73R sing 61 n n C37 H24 73R sing 62 n n C37 H25 73R sing 63 n n C37 H26 73R sing 64 n n C39 H28 73R sing 65 n n C39 H29 73R sing 66 n n C39 H30 73R sing 67 n n C40 H31 73R sing 68 n n C41 H32 73R sing 69 n n C41 H33 73R sing 70 n n C41 H34 73R sing 71 n n C42 H35 73R sing 72 n n C42 H36 73R sing 73 n n C42 H37 73R sing 74 n n # _atom_sites.entry_id 5T1A _atom_sites.fract_transf_matrix[1][1] 0.016883 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015458 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005883 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 73R A 1 1201 601 73R 73R . C 3 VT5 A 1 1202 602 VT5 VT5 . D 4 SO4 A 1 1203 701 SO4 SO4 . E 4 SO4 A 1 1204 702 SO4 SO4 . F 4 SO4 A 1 1205 703 SO4 SO4 . G 4 SO4 A 1 1206 704 SO4 SO4 . H 5 OLC A 1 1207 705 OLC OLC . I 6 ZN A 1 1208 706 ZN ZN . J 7 HOH A 1 1301 2 HOH HOH . J 7 HOH A 2 1302 11 HOH HOH . J 7 HOH A 3 1303 9 HOH HOH . J 7 HOH A 4 1304 13 HOH HOH . J 7 HOH A 5 1305 4 HOH HOH . J 7 HOH A 6 1306 10 HOH HOH . J 7 HOH A 7 1307 17 HOH HOH . J 7 HOH A 8 1308 14 HOH HOH . J 7 HOH A 9 1309 3 HOH HOH . J 7 HOH A 10 1310 12 HOH HOH . J 7 HOH A 11 1311 1 HOH HOH . J 7 HOH A 12 1312 16 HOH HOH . J 7 HOH A 13 1313 15 HOH HOH . J 7 HOH A 14 1314 5 HOH HOH . J 7 HOH A 15 1315 7 HOH HOH . J 7 HOH A 16 1316 8 HOH HOH . J 7 HOH A 17 1317 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 73R . . . B 2 2.612 26.418 152.427 1 42.33 ? C1 73R 1201 A 1 HETATM 2 C C2 73R . . . B 2 2.58 25.93 153.784 1 40.78 ? C2 73R 1201 A 1 HETATM 3 C C3 73R . . . B 2 3.864 25.693 154.379 1 38.08 ? C3 73R 1201 A 1 HETATM 4 C C5 73R . . . B 2 4.977 26.356 152.48 1 38.42 ? C5 73R 1201 A 1 HETATM 5 C C8 73R . . . B 2 1.437 26.676 151.767 1 42.24 ? C8 73R 1201 A 1 HETATM 6 C C9 73R . . . B 2 0.2 26.476 152.385 1 39.6 ? C9 73R 1201 A 1 HETATM 7 C C12 73R . . . B 2 0.14 26.002 153.708 1 39.74 ? C12 73R 1201 A 1 HETATM 8 C C13 73R . . . B 2 1.316 25.729 154.406 1 40.23 ? C13 73R 1201 A 1 HETATM 9 C C14 73R . . . B 2 5.124 25.117 156.581 1 30.15 ? C14 73R 1201 A 1 HETATM 10 C C15 73R . . . B 2 5.961 26.31 156.584 1 28.02 ? C15 73R 1201 A 1 HETATM 11 C C17 73R . . . B 2 7.513 24.396 156.556 1 26.05 ? C17 73R 1201 A 1 HETATM 12 C C18 73R . . . B 2 6.059 24.119 156.055 1 29.96 ? C18 73R 1201 A 1 HETATM 13 C CAP 73R . . . B 2 -1.227 25.788 154.361 1 40.37 ? CAP 73R 1201 A 1 HETATM 14 N N4 73R . . . B 2 4.971 25.914 153.71 1 38.86 ? N4 73R 1201 A 1 HETATM 15 N N6 73R . . . B 2 3.841 26.613 151.823 1 40.29 ? N6 73R 1201 A 1 HETATM 16 N N7 73R . . . B 2 3.907 25.196 155.767 1 32.85 ? N7 73R 1201 A 1 HETATM 17 N N16 73R . . . B 2 7.367 25.918 156.574 1 26.99 ? N16 73R 1201 A 1 HETATM 18 O O24 73R . . . B 2 5.574 27.465 156.612 1 27.82 ? O24 73R 1201 A 1 HETATM 19 C C26 73R . . . B 2 8.417 26.939 156.61 1 28.52 ? C26 73R 1201 A 1 HETATM 20 C C27 73R . . . B 2 9.23 26.882 157.875 1 28.65 ? C27 73R 1201 A 1 HETATM 21 C C28 73R . . . B 2 10.317 25.768 157.765 1 35.3 ? C28 73R 1201 A 1 HETATM 22 C C29 73R . . . B 2 11.169 25.737 156.503 1 35.87 ? C29 73R 1201 A 1 HETATM 23 C C30 73R . . . B 2 10.279 25.867 155.287 1 34.22 ? C30 73R 1201 A 1 HETATM 24 C C31 73R . . . B 2 9.291 27.02 155.377 1 31.25 ? C31 73R 1201 A 1 HETATM 25 C C35 73R . . . B 2 8.415 27.098 154.135 1 30.14 ? C35 73R 1201 A 1 HETATM 26 C C36 73R . . . B 2 8.582 28.552 153.526 1 36.25 ? C36 73R 1201 A 1 HETATM 27 C C37 73R . . . B 2 7.281 29.002 152.872 1 37.43 ? C37 73R 1201 A 1 HETATM 28 N N38 73R . . . B 2 11.917 24.504 156.374 1 39.24 ? N38 73R 1201 A 1 HETATM 29 C C39 73R . . . B 2 11.477 23.448 157.26 1 42.45 ? C39 73R 1201 A 1 HETATM 30 C C40 73R . . . B 2 13.365 24.683 156.482 1 37.74 ? C40 73R 1201 A 1 HETATM 31 C C41 73R . . . B 2 13.755 25.213 157.809 1 37.73 ? C41 73R 1201 A 1 HETATM 32 C C42 73R . . . B 2 13.876 25.608 155.372 1 37.34 ? C42 73R 1201 A 1 HETATM 33 F F32 73R . . . B 2 -2.184 25.88 153.403 1 41.03 ? F32 73R 1201 A 1 HETATM 34 F F33 73R . . . B 2 -1.277 24.556 154.929 1 40.34 ? F33 73R 1201 A 1 HETATM 35 F F34 73R . . . B 2 -1.446 26.724 155.297 1 40.6 ? F34 73R 1201 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 35 #