data_5T1A # _model_server_result.job_id mAEu1cJ2tVcs4qqT6aLYgg _model_server_result.datetime_utc '2024-11-27 13:03:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t1a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1202}' # _entry.id 5T1A # _exptl.entry_id 5T1A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.8 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{R})-1-(4-chloranyl-2-fluoranyl-phenyl)-2-cyclohexyl-3-ethanoyl-4-oxidanyl-2~{H}-pyrrol-5-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5T1A _cell.length_a 59.23 _cell.length_b 64.69 _cell.length_c 169.98 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T1A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 123 A CYS 113 1_555 A SG CYS 200 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A C LYS 190 A LYS 180 1_555 A N YCM 191 A YCM 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C YCM 191 A YCM 181 1_555 A N GLN 192 A GLN 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A NE2 HIS 154 A HIS 144 1_555 I ZN ZN . A ZN 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc2 A OE2 GLU 409 A GLU 238 1_555 I ZN ZN . A ZN 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? metalc ? metalc3 A OE2 GLU 247 A GLU 1005 1_555 I ZN ZN . A ZN 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc4 I ZN ZN . A ZN 1208 1_555 J O HOH . A HOH 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? # _chem_comp.formula 'C18 H19 Cl F N O3' _chem_comp.formula_weight 351.8 _chem_comp.id VT5 _chem_comp.mon_nstd_flag . _chem_comp.name (2~{R})-1-(4-chloranyl-2-fluoranyl-phenyl)-2-cyclohexyl-3-ethanoyl-4-oxidanyl-2~{H}-pyrrol-5-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C15 VT5 sing 518 n n C16 C15 VT5 doub 519 n y C16 C17 VT5 sing 520 n y C15 C14 VT5 sing 521 n y F C17 VT5 sing 522 n n C17 C12 VT5 doub 523 n y C8 C9 VT5 sing 524 n n C8 C7 VT5 sing 525 n n C14 C13 VT5 doub 526 n y C9 C10 VT5 sing 527 n n C12 C13 VT5 sing 528 n y C12 N VT5 sing 529 n n C10 C11 VT5 sing 530 n n C7 C6 VT5 sing 531 n n O1 C4 VT5 doub 532 n n C6 C11 VT5 sing 533 n n C6 C5 VT5 sing 534 n n N C4 VT5 sing 535 n n N C5 VT5 sing 536 n n C4 C3 VT5 sing 537 n n C5 C2 VT5 sing 538 n n C3 C2 VT5 doub 539 n n C3 O2 VT5 sing 540 n n C2 C1 VT5 sing 541 n n C1 O VT5 doub 542 n n C1 C VT5 sing 543 n n C H1 VT5 sing 544 n n C H2 VT5 sing 545 n n C H3 VT5 sing 546 n n C5 H4 VT5 sing 547 n n C6 H5 VT5 sing 548 n n C11 H6 VT5 sing 549 n n C11 H7 VT5 sing 550 n n C10 H8 VT5 sing 551 n n C10 H9 VT5 sing 552 n n C9 H10 VT5 sing 553 n n C9 H11 VT5 sing 554 n n C8 H12 VT5 sing 555 n n C8 H13 VT5 sing 556 n n C7 H14 VT5 sing 557 n n C7 H15 VT5 sing 558 n n C13 H16 VT5 sing 559 n n C14 H17 VT5 sing 560 n n C16 H18 VT5 sing 561 n n O2 H19 VT5 sing 562 n n # _atom_sites.entry_id 5T1A _atom_sites.fract_transf_matrix[1][1] 0.016883 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015458 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005883 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 73R A 1 1201 601 73R 73R . C 3 VT5 A 1 1202 602 VT5 VT5 . D 4 SO4 A 1 1203 701 SO4 SO4 . E 4 SO4 A 1 1204 702 SO4 SO4 . F 4 SO4 A 1 1205 703 SO4 SO4 . G 4 SO4 A 1 1206 704 SO4 SO4 . H 5 OLC A 1 1207 705 OLC OLC . I 6 ZN A 1 1208 706 ZN ZN . J 7 HOH A 1 1301 2 HOH HOH . J 7 HOH A 2 1302 11 HOH HOH . J 7 HOH A 3 1303 9 HOH HOH . J 7 HOH A 4 1304 13 HOH HOH . J 7 HOH A 5 1305 4 HOH HOH . J 7 HOH A 6 1306 10 HOH HOH . J 7 HOH A 7 1307 17 HOH HOH . J 7 HOH A 8 1308 14 HOH HOH . J 7 HOH A 9 1309 3 HOH HOH . J 7 HOH A 10 1310 12 HOH HOH . J 7 HOH A 11 1311 1 HOH HOH . J 7 HOH A 12 1312 16 HOH HOH . J 7 HOH A 13 1313 15 HOH HOH . J 7 HOH A 14 1314 5 HOH HOH . J 7 HOH A 15 1315 7 HOH HOH . J 7 HOH A 16 1316 8 HOH HOH . J 7 HOH A 17 1317 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C VT5 . . . C 3 3.528 25.441 191.332 1 34.52 ? C VT5 1202 A 1 HETATM 2 C C1 VT5 . . . C 3 4.672 26.13 190.644 1 33.69 ? C1 VT5 1202 A 1 HETATM 3 O O VT5 . . . C 3 5.826 25.881 190.956 1 36.66 ? O VT5 1202 A 1 HETATM 4 C C2 VT5 . . . C 3 4.403 27.155 189.576 1 28.84 ? C2 VT5 1202 A 1 HETATM 5 C C3 VT5 . . . C 3 3.337 27.697 189.319 1 29.52 ? C3 VT5 1202 A 1 HETATM 6 C C4 VT5 . . . C 3 3.637 28.654 188.211 1 27.41 ? C4 VT5 1202 A 1 HETATM 7 O O1 VT5 . . . C 3 2.754 29.403 187.659 1 29.12 ? O1 VT5 1202 A 1 HETATM 8 N N VT5 . . . C 3 4.945 28.59 187.922 1 25.08 ? N VT5 1202 A 1 HETATM 9 C C5 VT5 . . . C 3 5.605 27.593 188.794 1 25.74 ? C5 VT5 1202 A 1 HETATM 10 C C6 VT5 . . . C 3 6.164 26.578 187.788 1 22.5 ? C6 VT5 1202 A 1 HETATM 11 C C11 VT5 . . . C 3 7.55 26.071 188.176 1 20.59 ? C11 VT5 1202 A 1 HETATM 12 C C10 VT5 . . . C 3 8.143 25.277 187.021 1 17 ? C10 VT5 1202 A 1 HETATM 13 C C9 VT5 . . . C 3 7.251 24.085 186.702 1 16.61 ? C9 VT5 1202 A 1 HETATM 14 C C8 VT5 . . . C 3 5.836 24.539 186.368 1 18.2 ? C8 VT5 1202 A 1 HETATM 15 C C7 VT5 . . . C 3 5.245 25.397 187.483 1 20.93 ? C7 VT5 1202 A 1 HETATM 16 C C12 VT5 . . . C 3 5.566 29.315 186.99 1 24.9 ? C12 VT5 1202 A 1 HETATM 17 C C13 VT5 . . . C 3 6.648 30.123 187.333 1 25.07 ? C13 VT5 1202 A 1 HETATM 18 C C14 VT5 . . . C 3 7.33 30.907 186.418 1 24.49 ? C14 VT5 1202 A 1 HETATM 19 C C15 VT5 . . . C 3 6.935 30.909 185.094 1 23.56 ? C15 VT5 1202 A 1 HETATM 20 C C16 VT5 . . . C 3 5.86 30.122 184.711 1 23.95 ? C16 VT5 1202 A 1 HETATM 21 C C17 VT5 . . . C 3 5.192 29.342 185.652 1 25.1 ? C17 VT5 1202 A 1 HETATM 22 F F VT5 . . . C 3 4.152 28.588 185.252 1 26 ? F VT5 1202 A 1 HETATM 23 CL CL VT5 . . . C 3 7.821 31.924 183.912 1 57.42 ? CL VT5 1202 A 1 HETATM 24 O O2 VT5 . . . C 3 1.991 27.493 189.905 1 32.75 ? O2 VT5 1202 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #