data_5T1A # _model_server_result.job_id fkWi09rkZX5zREb8jVYZ4Q _model_server_result.datetime_utc '2024-11-27 12:27:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t1a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1207}' # _entry.id 5T1A # _exptl.entry_id 5T1A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5T1A _cell.length_a 59.23 _cell.length_b 64.69 _cell.length_c 169.98 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T1A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 123 A CYS 113 1_555 A SG CYS 200 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A C LYS 190 A LYS 180 1_555 A N YCM 191 A YCM 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C YCM 191 A YCM 181 1_555 A N GLN 192 A GLN 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A NE2 HIS 154 A HIS 144 1_555 I ZN ZN . A ZN 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc2 A OE2 GLU 409 A GLU 238 1_555 I ZN ZN . A ZN 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? metalc ? metalc3 A OE2 GLU 247 A GLU 1005 1_555 I ZN ZN . A ZN 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc4 I ZN ZN . A ZN 1208 1_555 J O HOH . A HOH 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 311 n n C10 C9 OLC doub 312 n n C10 C11 OLC sing 313 n n C9 C8 OLC sing 314 n n C17 C16 OLC sing 315 z n C11 C12 OLC sing 316 n n C8 C7 OLC sing 317 n n C24 C22 OLC sing 318 n n C24 O25 OLC sing 319 n n C16 C15 OLC sing 320 n n C12 C13 OLC sing 321 n n C7 C6 OLC sing 322 n n C15 C14 OLC sing 323 n n C13 C14 OLC sing 324 n n C6 C5 OLC sing 325 n n C5 C4 OLC sing 326 n n C4 C3 OLC sing 327 n n C3 C2 OLC sing 328 n n C2 C1 OLC sing 329 n n C21 C22 OLC sing 330 n n C21 O20 OLC sing 331 n n C1 O19 OLC doub 332 n n C1 O20 OLC sing 333 n n C22 O23 OLC sing 334 n n C18 H18 OLC sing 335 n n C18 H18A OLC sing 336 n n C18 H18B OLC sing 337 n n C10 H10 OLC sing 338 n n C9 H9 OLC sing 339 n n C17 H17 OLC sing 340 n n C17 H17A OLC sing 341 n n C11 H11 OLC sing 342 n n C11 H11A OLC sing 343 n n C8 H8 OLC sing 344 n n C8 H8A OLC sing 345 n n C24 H24 OLC sing 346 n n C24 H24A OLC sing 347 n n C16 H16 OLC sing 348 n n C16 H16A OLC sing 349 n n C12 H12 OLC sing 350 n n C12 H12A OLC sing 351 n n C7 H7 OLC sing 352 n n C7 H7A OLC sing 353 n n C15 H15 OLC sing 354 n n C15 H15A OLC sing 355 n n C13 H13 OLC sing 356 n n C13 H13A OLC sing 357 n n C6 H6 OLC sing 358 n n C6 H6A OLC sing 359 n n C14 H14 OLC sing 360 n n C14 H14A OLC sing 361 n n C5 H5 OLC sing 362 n n C5 H5A OLC sing 363 n n C4 H4 OLC sing 364 n n C4 H4A OLC sing 365 n n C3 H3 OLC sing 366 n n C3 H3A OLC sing 367 n n C2 H2 OLC sing 368 n n C2 H2A OLC sing 369 n n C21 H21 OLC sing 370 n n C21 H21A OLC sing 371 n n C22 H22 OLC sing 372 n n O25 HO25 OLC sing 373 n n O23 HO23 OLC sing 374 n n # _atom_sites.entry_id 5T1A _atom_sites.fract_transf_matrix[1][1] 0.016883 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015458 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005883 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 73R A 1 1201 601 73R 73R . C 3 VT5 A 1 1202 602 VT5 VT5 . D 4 SO4 A 1 1203 701 SO4 SO4 . E 4 SO4 A 1 1204 702 SO4 SO4 . F 4 SO4 A 1 1205 703 SO4 SO4 . G 4 SO4 A 1 1206 704 SO4 SO4 . H 5 OLC A 1 1207 705 OLC OLC . I 6 ZN A 1 1208 706 ZN ZN . J 7 HOH A 1 1301 2 HOH HOH . J 7 HOH A 2 1302 11 HOH HOH . J 7 HOH A 3 1303 9 HOH HOH . J 7 HOH A 4 1304 13 HOH HOH . J 7 HOH A 5 1305 4 HOH HOH . J 7 HOH A 6 1306 10 HOH HOH . J 7 HOH A 7 1307 17 HOH HOH . J 7 HOH A 8 1308 14 HOH HOH . J 7 HOH A 9 1309 3 HOH HOH . J 7 HOH A 10 1310 12 HOH HOH . J 7 HOH A 11 1311 1 HOH HOH . J 7 HOH A 12 1312 16 HOH HOH . J 7 HOH A 13 1313 15 HOH HOH . J 7 HOH A 14 1314 5 HOH HOH . J 7 HOH A 15 1315 7 HOH HOH . J 7 HOH A 16 1316 8 HOH HOH . J 7 HOH A 17 1317 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . H 5 -8.074 19.986 170.669 1 38.84 ? C18 OLC 1207 A 1 HETATM 2 C C10 OLC . . . H 5 -3.942 19.169 178.66 1 44.41 ? C10 OLC 1207 A 1 HETATM 3 C C9 OLC . . . H 5 -3.649 18.68 179.883 1 44.82 ? C9 OLC 1207 A 1 HETATM 4 C C17 OLC . . . H 5 -8.59 19.085 171.771 1 40.16 ? C17 OLC 1207 A 1 HETATM 5 C C11 OLC . . . H 5 -4.931 18.468 177.753 1 45.15 ? C11 OLC 1207 A 1 HETATM 6 C C8 OLC . . . H 5 -4.298 17.411 180.39 1 44.71 ? C8 OLC 1207 A 1 HETATM 7 C C24 OLC . . . H 5 -5.042 14.965 191.446 1 51.44 ? C24 OLC 1207 A 1 HETATM 8 C C16 OLC . . . H 5 -7.477 18.758 172.745 1 41.51 ? C16 OLC 1207 A 1 HETATM 9 C C12 OLC . . . H 5 -5.478 19.469 176.756 1 45.15 ? C12 OLC 1207 A 1 HETATM 10 C C7 OLC . . . H 5 -4.306 17.423 181.903 1 44.13 ? C7 OLC 1207 A 1 HETATM 11 C C15 OLC . . . H 5 -7.31 19.887 173.739 1 42.32 ? C15 OLC 1207 A 1 HETATM 12 C C13 OLC . . . H 5 -5.99 18.76 175.52 1 43.31 ? C13 OLC 1207 A 1 HETATM 13 C C6 OLC . . . H 5 -2.892 17.285 182.424 1 44.34 ? C6 OLC 1207 A 1 HETATM 14 C C14 OLC . . . H 5 -7.34 19.335 175.148 1 42.63 ? C14 OLC 1207 A 1 HETATM 15 C C5 OLC . . . H 5 -2.936 16.825 183.866 1 44.97 ? C5 OLC 1207 A 1 HETATM 16 C C4 OLC . . . H 5 -1.531 16.777 184.426 1 44.6 ? C4 OLC 1207 A 1 HETATM 17 C C3 OLC . . . H 5 -1.428 15.702 185.487 1 46.07 ? C3 OLC 1207 A 1 HETATM 18 C C2 OLC . . . H 5 -2.284 16.071 186.679 1 48.69 ? C2 OLC 1207 A 1 HETATM 19 C C21 OLC . . . H 5 -3.531 15.258 189.498 1 52.39 ? C21 OLC 1207 A 1 HETATM 20 C C1 OLC . . . H 5 -1.785 15.337 187.906 1 50.13 ? C1 OLC 1207 A 1 HETATM 21 C C22 OLC . . . H 5 -3.61 14.913 190.97 1 52.22 ? C22 OLC 1207 A 1 HETATM 22 O O19 OLC . . . H 5 -0.998 14.417 187.78 1 49.33 ? O19 OLC 1207 A 1 HETATM 23 O O25 OLC . . . H 5 -5.086 14.47 192.765 1 52.38 ? O25 OLC 1207 A 1 HETATM 24 O O23 OLC . . . H 5 -3.123 13.609 191.181 1 54.19 ? O23 OLC 1207 A 1 HETATM 25 O O20 OLC . . . H 5 -2.233 15.712 189.186 1 51.58 ? O20 OLC 1207 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #