data_5T1W # _model_server_result.job_id kGWyGBFPBypAB1qqkDr0JQ _model_server_result.datetime_utc '2024-11-25 20:39:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t1w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5T1W # _exptl.entry_id 5T1W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.408 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4aR,6R,8aS)-8a-(2,4-difluoro-5-{[(2,2,2-trifluoroethyl)amino]methyl}phenyl)-6-(fluoromethyl)-4,4a,5,6,8,8a-hexahydropyrano[3,4-d][1,3]thiazin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5T1W _cell.length_a 101.46 _cell.length_b 101.46 _cell.length_c 170.66 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T1W _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 171 A CYS 155 1_555 A SG CYS 375 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 233 A CYS 217 1_555 A SG CYS 398 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 A SG CYS 285 A CYS 269 1_555 A SG CYS 335 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A O HIS 197 A HIS 181 1_555 G NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc2 A O TYR 200 A TYR 184 1_555 G NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.107 ? metalc ? metalc3 A OG SER 344 A SER 328 1_555 F NA NA . A NA 405 12_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? # _chem_comp.formula 'C17 H19 F6 N3 O S' _chem_comp.formula_weight 427.408 _chem_comp.id 74B _chem_comp.mon_nstd_flag . _chem_comp.name (4aR,6R,8aS)-8a-(2,4-difluoro-5-{[(2,2,2-trifluoroethyl)amino]methyl}phenyl)-6-(fluoromethyl)-4,4a,5,6,8,8a-hexahydropyrano[3,4-d][1,3]thiazin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F6 C17 74B sing 1 n n F5 C17 74B sing 2 n n C17 F4 74B sing 3 n n C17 C16 74B sing 4 n n N3 C16 74B sing 5 n n N3 C15 74B sing 6 n n C15 C2 74B sing 7 n n N2 C13 74B sing 8 n n C2 C1 74B doub 9 n y C2 C3 74B sing 10 n y C1 C6 74B sing 11 n y C13 N1 74B doub 12 n n C13 S1 74B sing 13 n n N1 C7 74B sing 14 n n F3 C3 74B sing 15 n n C3 C4 74B doub 16 n y S1 C12 74B sing 17 n n C6 C7 74B sing 18 n n C6 C5 74B doub 19 n y C7 C8 74B sing 20 n n C7 C11 74B sing 21 n n C8 O1 74B sing 22 n n C4 C5 74B sing 23 n y C5 F2 74B sing 24 n n C12 C11 74B sing 25 n n O1 C9 74B sing 26 n n C11 C10 74B sing 27 n n C10 C9 74B sing 28 n n C9 C14 74B sing 29 n n C14 F1 74B sing 30 n n C4 H1 74B sing 31 n n C10 H2 74B sing 32 n n C10 H3 74B sing 33 n n C12 H4 74B sing 34 n n C12 H5 74B sing 35 n n C16 H6 74B sing 36 n n C16 H7 74B sing 37 n n C14 H8 74B sing 38 n n C14 H9 74B sing 39 n n C8 H10 74B sing 40 n n C8 H11 74B sing 41 n n C1 H12 74B sing 42 n n C9 H13 74B sing 43 n n C11 H14 74B sing 44 n n N2 H15 74B sing 45 n n N2 H16 74B sing 46 n n C15 H17 74B sing 47 n n C15 H18 74B sing 48 n n N3 H19 74B sing 49 n n # _atom_sites.entry_id 5T1W _atom_sites.fract_transf_matrix[1][1] 0.009856 _atom_sites.fract_transf_matrix[1][2] 0.00569 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011381 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00586 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 74B A 1 401 1 74B P16 . C 3 IOD A 1 402 1 IOD I . D 3 IOD A 1 403 2 IOD I . E 3 IOD A 1 404 3 IOD I . F 4 NA A 1 405 1 NA NA . G 4 NA A 1 406 2 NA NA . H 5 GOL A 1 407 1 GOL GOL . I 5 GOL A 1 408 2 GOL GOL . J 5 GOL A 1 409 3 GOL GOL . K 6 DMS A 1 410 1 DMS DMS . L 7 CL A 1 411 1 CL CL . M 7 CL A 1 412 2 CL CL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 74B . . . B 2 16.329 -36.41 9.619 1 9.27 ? O1 74B 401 A 1 HETATM 2 C C2 74B . . . B 2 21.228 -38.901 6.806 1 12.95 ? C2 74B 401 A 1 HETATM 3 C C3 74B . . . B 2 22.122 -38.627 7.821 1 18.48 ? C3 74B 401 A 1 HETATM 4 C C4 74B . . . B 2 21.735 -38.087 9.019 1 16.78 ? C4 74B 401 A 1 HETATM 5 C C5 74B . . . B 2 20.398 -37.846 9.196 1 12.47 ? C5 74B 401 A 1 HETATM 6 C C6 74B . . . B 2 19.428 -38.134 8.245 1 9.66 ? C6 74B 401 A 1 HETATM 7 C C7 74B . . . B 2 17.918 -37.992 8.555 1 7.88 ? C7 74B 401 A 1 HETATM 8 C C10 74B . . . B 2 16.282 -38.654 10.492 1 8.89 ? C10 74B 401 A 1 HETATM 9 C C12 74B . . . B 2 17.57 -40.459 9.242 1 4.57 ? C12 74B 401 A 1 HETATM 10 C C13 74B . . . B 2 16.378 -39.14 7.053 1 6.73 ? C13 74B 401 A 1 HETATM 11 C C16 74B . . . B 2 21.198 -41.946 5.08 1 20.2 ? C16 74B 401 A 1 HETATM 12 C C17 74B . . . B 2 22.12 -42.146 3.835 1 23.13 ? C17 74B 401 A 1 HETATM 13 C C14 74B . . . B 2 14.816 -36.801 11.276 1 8.09 ? C14 74B 401 A 1 HETATM 14 C C8 74B . . . B 2 17.61 -36.512 8.985 1 8.38 ? C8 74B 401 A 1 HETATM 15 C C1 74B . . . B 2 19.876 -38.642 7.026 1 9.78 ? C1 74B 401 A 1 HETATM 16 C C9 74B . . . B 2 16.215 -37.175 10.815 1 8.45 ? C9 74B 401 A 1 HETATM 17 C C11 74B . . . B 2 17.563 -39.01 9.723 1 6.96 ? C11 74B 401 A 1 HETATM 18 S S1 74B . . . B 2 16.473 -40.75 7.836 1 8.63 ? S1 74B 401 A 1 HETATM 19 N N1 74B . . . B 2 17.026 -38.058 7.386 1 7.21 ? N1 74B 401 A 1 HETATM 20 N N2 74B . . . B 2 15.562 -39.172 5.999 1 4.27 ? N2 74B 401 A 1 HETATM 21 F F1 74B . . . B 2 14.869 -35.48 11.621 1 11.22 ? F1 74B 401 A 1 HETATM 22 F F2 74B . . . B 2 20.015 -37.235 10.341 1 11.49 ? F2 74B 401 A 1 HETATM 23 F F3 74B . . . B 2 23.421 -38.979 7.651 1 24.19 ? F3 74B 401 A 1 HETATM 24 C C15 74B . . . B 2 21.7 -39.541 5.528 1 13.35 ? C15 74B 401 A 1 HETATM 25 N N3 74B . . . B 2 20.779 -40.55 5.009 1 17.54 ? N3 74B 401 A 1 HETATM 26 F F4 74B . . . B 2 23.275 -41.506 3.974 1 23.35 ? F4 74B 401 A 1 HETATM 27 F F5 74B . . . B 2 22.423 -43.419 3.635 1 26.69 ? F5 74B 401 A 1 HETATM 28 F F6 74B . . . B 2 21.537 -41.721 2.706 1 22.18 ? F6 74B 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 28 #