data_5T29 # _model_server_result.job_id FnIzp2_Ppns5EUYiXztiYQ _model_server_result.datetime_utc '2024-10-18 06:28:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5t29 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 5T29 # _exptl.entry_id 5T29 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.46 _cell.angle_gamma 90 _cell.entry_id 5T29 _cell.length_a 110.879 _cell.length_b 66.972 _cell.length_c 84.259 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5T29 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 98 H CYS 92 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 A SG CYS 158 H CYS 140 1_555 A SG CYS 214 H CYS 196 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 158 H CYS 140 1_555 A SG CYS 214 H CYS 196 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 22 L CYS 23 1_555 B SG CYS 87 L CYS 88 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.051 ? disulf ? disulf5 B SG CYS 22 L CYS 23 1_555 B SG CYS 87 L CYS 88 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.05 ? disulf ? disulf6 B SG CYS 22 L CYS 23 1_555 B SG CYS 87 L CYS 88 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.038 ? disulf ? disulf7 B SG CYS 137 L CYS 135 1_555 B SG CYS 196 L CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.055 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 276 n n P O2 PO4 sing 277 n n P O3 PO4 sing 278 n n P O4 PO4 sing 279 n n # _atom_sites.entry_id 5T29 _atom_sites.fract_transf_matrix[1][1] 0.009019 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001829 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014932 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01211 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 PO4 L 1 301 301 PO4 PO4 . E 5 PEG L 1 302 302 PEG PEG . F 6 HOH H 1 301 301 HOH HOH . F 6 HOH H 2 302 302 HOH HOH . F 6 HOH H 3 303 303 HOH HOH . F 6 HOH H 4 304 304 HOH HOH . F 6 HOH H 5 305 305 HOH HOH . F 6 HOH H 6 306 306 HOH HOH . F 6 HOH H 7 307 307 HOH HOH . F 6 HOH H 8 308 308 HOH HOH . F 6 HOH H 9 309 309 HOH HOH . F 6 HOH H 10 310 310 HOH HOH . F 6 HOH H 11 311 311 HOH HOH . F 6 HOH H 12 312 312 HOH HOH . F 6 HOH H 13 313 313 HOH HOH . F 6 HOH H 14 314 314 HOH HOH . F 6 HOH H 15 315 315 HOH HOH . F 6 HOH H 16 316 316 HOH HOH . F 6 HOH H 17 317 317 HOH HOH . F 6 HOH H 18 318 318 HOH HOH . F 6 HOH H 19 319 319 HOH HOH . F 6 HOH H 20 320 320 HOH HOH . F 6 HOH H 21 321 321 HOH HOH . F 6 HOH H 22 322 322 HOH HOH . F 6 HOH H 23 323 323 HOH HOH . F 6 HOH H 24 324 324 HOH HOH . F 6 HOH H 25 325 325 HOH HOH . F 6 HOH H 26 326 326 HOH HOH . F 6 HOH H 27 327 327 HOH HOH . F 6 HOH H 28 328 328 HOH HOH . F 6 HOH H 29 329 329 HOH HOH . F 6 HOH H 30 330 330 HOH HOH . F 6 HOH H 31 331 331 HOH HOH . F 6 HOH H 32 332 332 HOH HOH . F 6 HOH H 33 333 333 HOH HOH . F 6 HOH H 34 334 334 HOH HOH . F 6 HOH H 35 335 335 HOH HOH . F 6 HOH H 36 336 336 HOH HOH . F 6 HOH H 37 337 337 HOH HOH . F 6 HOH H 38 338 338 HOH HOH . F 6 HOH H 39 339 339 HOH HOH . F 6 HOH H 40 340 340 HOH HOH . F 6 HOH H 41 341 341 HOH HOH . F 6 HOH H 42 342 342 HOH HOH . F 6 HOH H 43 343 343 HOH HOH . F 6 HOH H 44 344 344 HOH HOH . F 6 HOH H 45 345 345 HOH HOH . F 6 HOH H 46 346 346 HOH HOH . F 6 HOH H 47 347 347 HOH HOH . F 6 HOH H 48 348 348 HOH HOH . F 6 HOH H 49 349 349 HOH HOH . F 6 HOH H 50 350 350 HOH HOH . F 6 HOH H 51 351 351 HOH HOH . F 6 HOH H 52 352 352 HOH HOH . F 6 HOH H 53 353 353 HOH HOH . F 6 HOH H 54 354 354 HOH HOH . F 6 HOH H 55 355 355 HOH HOH . F 6 HOH H 56 356 356 HOH HOH . F 6 HOH H 57 357 357 HOH HOH . F 6 HOH H 58 358 358 HOH HOH . F 6 HOH H 59 359 359 HOH HOH . F 6 HOH H 60 360 360 HOH HOH . F 6 HOH H 61 361 361 HOH HOH . F 6 HOH H 62 362 362 HOH HOH . F 6 HOH H 63 363 363 HOH HOH . F 6 HOH H 64 364 364 HOH HOH . F 6 HOH H 65 365 365 HOH HOH . F 6 HOH H 66 366 366 HOH HOH . F 6 HOH H 67 367 367 HOH HOH . F 6 HOH H 68 368 368 HOH HOH . F 6 HOH H 69 369 369 HOH HOH . F 6 HOH H 70 370 370 HOH HOH . F 6 HOH H 71 371 371 HOH HOH . F 6 HOH H 72 372 372 HOH HOH . F 6 HOH H 73 373 373 HOH HOH . F 6 HOH H 74 374 374 HOH HOH . F 6 HOH H 75 375 375 HOH HOH . G 6 HOH L 1 401 404 HOH HOH . G 6 HOH L 2 402 405 HOH HOH . G 6 HOH L 3 403 403 HOH HOH . G 6 HOH L 4 404 402 HOH HOH . G 6 HOH L 5 405 406 HOH HOH . G 6 HOH L 6 406 407 HOH HOH . G 6 HOH L 7 407 401 HOH HOH . G 6 HOH L 8 408 408 HOH HOH . G 6 HOH L 9 409 409 HOH HOH . G 6 HOH L 10 410 410 HOH HOH . G 6 HOH L 11 411 411 HOH HOH . G 6 HOH L 12 412 412 HOH HOH . G 6 HOH L 13 413 413 HOH HOH . G 6 HOH L 14 414 414 HOH HOH . G 6 HOH L 15 415 415 HOH HOH . G 6 HOH L 16 416 416 HOH HOH . G 6 HOH L 17 417 417 HOH HOH . G 6 HOH L 18 418 418 HOH HOH . G 6 HOH L 19 419 419 HOH HOH . G 6 HOH L 20 420 420 HOH HOH . G 6 HOH L 21 421 421 HOH HOH . G 6 HOH L 22 422 422 HOH HOH . G 6 HOH L 23 423 423 HOH HOH . G 6 HOH L 24 424 424 HOH HOH . G 6 HOH L 25 425 425 HOH HOH . G 6 HOH L 26 426 426 HOH HOH . G 6 HOH L 27 427 427 HOH HOH . G 6 HOH L 28 428 428 HOH HOH . G 6 HOH L 29 429 429 HOH HOH . G 6 HOH L 30 430 430 HOH HOH . G 6 HOH L 31 431 431 HOH HOH . G 6 HOH L 32 432 432 HOH HOH . G 6 HOH L 33 433 433 HOH HOH . G 6 HOH L 34 434 434 HOH HOH . G 6 HOH L 35 435 435 HOH HOH . G 6 HOH L 36 436 436 HOH HOH . G 6 HOH L 37 437 437 HOH HOH . G 6 HOH L 38 438 438 HOH HOH . G 6 HOH L 39 439 439 HOH HOH . G 6 HOH L 40 440 440 HOH HOH . G 6 HOH L 41 441 441 HOH HOH . G 6 HOH L 42 442 442 HOH HOH . G 6 HOH L 43 443 443 HOH HOH . G 6 HOH L 44 444 444 HOH HOH . G 6 HOH L 45 445 445 HOH HOH . G 6 HOH L 46 446 446 HOH HOH . G 6 HOH L 47 447 447 HOH HOH . G 6 HOH L 48 448 448 HOH HOH . G 6 HOH L 49 449 449 HOH HOH . G 6 HOH L 50 450 450 HOH HOH . G 6 HOH L 51 451 451 HOH HOH . G 6 HOH L 52 452 452 HOH HOH . G 6 HOH L 53 453 453 HOH HOH . G 6 HOH L 54 454 454 HOH HOH . G 6 HOH L 55 455 455 HOH HOH . G 6 HOH L 56 456 456 HOH HOH . G 6 HOH L 57 457 457 HOH HOH . G 6 HOH L 58 458 458 HOH HOH . G 6 HOH L 59 459 459 HOH HOH . G 6 HOH L 60 460 460 HOH HOH . G 6 HOH L 61 461 461 HOH HOH . G 6 HOH L 62 462 462 HOH HOH . G 6 HOH L 63 463 463 HOH HOH . G 6 HOH L 64 464 464 HOH HOH . G 6 HOH L 65 465 465 HOH HOH . G 6 HOH L 66 466 466 HOH HOH . G 6 HOH L 67 467 467 HOH HOH . G 6 HOH L 68 468 468 HOH HOH . H 6 HOH O 1 201 201 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 4 -9.781 28.504 122.894 1 88.92 ? P PO4 301 L 1 HETATM 2 O O1 PO4 . . . D 4 -10.938 28.712 121.948 1 83.54 ? O1 PO4 301 L 1 HETATM 3 O O2 PO4 . . . D 4 -10.312 28.395 124.304 1 96.5 ? O2 PO4 301 L 1 HETATM 4 O O3 PO4 . . . D 4 -9.04 27.233 122.554 1 80 ? O3 PO4 301 L 1 HETATM 5 O O4 PO4 . . . D 4 -8.841 29.686 122.801 1 90.24 ? O4 PO4 301 L 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 5 #